DC887296

Overview
NameDC887296
Unique NameDC887296
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig402 contig Csv1_Contig402:812..1438. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DC887296 vs. ExPASy Swiss-Prot
Match: B2_DAUCA (B2 protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.660e-33
Identity = 60/83 (72.29%), Postives = 74/83 (89.16%), Query Frame = -2 
Query:  378 HQLHGIFEATGFGGSNIDPTAWEDKKCKGESRFPAQVRIRVRKLCKALEEDAFRPVLHHYDGPKFRLELSVPETLDLMDLCEQ 626
            HQLHG+FEA  FGG+NIDPTAWEDKK +GESRFPAQVR+  RK+C+ LEED+FRP+LHHYDGPKFRLEL++PE + L+D+ E+
Sbjct:  122 HQLHGVFEAASFGGTNIDPTAWEDKKNQGESRFPAQVRVMTRKICEPLEEDSFRPILHHYDGPKFRLELNIPEAISLLDIFEE 204
The following BLAST results are available for this feature:
BLAST of DC887296 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
B2_DAUCA1.660e-3372.29B2 protein OS=Daucus carota PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionDC887296 EIC Citrus sinensis cDNA clone EIC0155 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887296 ID=DC887296; Name=DC887296; organism=Citrus sinensis; type=EST; length=627bp
TTCAATTATCCAAACATCATAAAACACAAGACAATCATCAGAAACTCATA
TTACATACACAGGACAGAGATATTAAAGCCTTCATGTTTAAAGGCGCGCA
CATTCTTTCTCTTTCACATCTTGCAAGTCTGTCTTTAAGACTGCATTACT
ATCAAATGTAATACATACTGCAAATGCTCAAGAAGTAGCTTCATGAGACG
AAAATATTTTATTTAGTTGACTCACACAACATTTCCTACTTTTCACAGGA
AGATTCATACAACCAGACTTTTACCATAGCTTGCGCTCTTGAGGAAAATC
GGTGAAAAGCAGGCAGCTCACATCCTACCACATTTGCCAATTCCGCTAAA
ATATTATGCTTATGCAGCAGAGCCCGCTTGTTCACAAAGATCCATTAGAT
CAAGAGTCTCAGGAACAGAGAGCTCAAGACGAAATTTAGGACCATCGTAG
TGATGCAAGACAGGCCTAAAAGCATCTTCTTCCAATGCCTTGCACAGTTT
TCTTACCCGGATCCTTACCTGAGCAGGAAACCTTGATTCCCCTTTACACT
TTTTGTCCTCCCAGGCTGTTGGGTCAATGTTGGAGCCTCCAAAACCAGTT
GCCTCAAATATTCCATGCAGTTGGTGA
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