DC887289

Overview
NameDC887289
Unique NameDC887289
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9601 contig Csv1_Contig9601:97..727. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887289 vs. ExPASy Swiss-Prot
Match: FER3_MAIZE (Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.692e-47
Identity = 96/145 (66.21%), Postives = 111/145 (76.55%), Query Frame = -2
Query:  196 TSCLFQAAPRSKKFS--LVKSPGSLGSTRSVSKAFGLKCSS-FKASAMAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 621
            TSC      R+ + S   VKSP SL     V+K   LK S     SAMAVYKVKL+GP GEE+EFDAPDDAYI+D+AE  G+ELPYSCRAGACSTCAG++ SGSVDQSDGSFLDD Q E+G+VLTCV+YP SDCVI+THKE +LY
Sbjct:    8 TSCTLLGNVRTTQASQTAVKSPSSLSFFSQVTKVPSLKTSKKLDVSAMAVYKVKLVGPEGEEHEFDAPDDAYILDAAETAGVELPYSCRAGACSTCAGKIESGSVDQSDGSFLDDGQQEEGYVLTCVSYPKSDCVIHTHKEGDLY 152          
BLAST of DC887289 vs. ExPASy Swiss-Prot
Match: FER3_ARATH (Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana GN=FD3 PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.336e-46
Identity = 86/123 (69.92%), Postives = 109/123 (88.62%), Query Frame = -2
Query:  196 SLGSTRSVSKAFGLKCS--SFKASAMAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 558
            S+GST+ VS++FGLKCS  S  A+  AVYKVKL+GP+G+E+EF+  DD YI+D+AE+ G++LPYSCRAGACSTCAGQ+VSG+VDQSDGSFL+D  +EKG+VLTCVAYP SDCVI+THKE+EL+
Sbjct:   33 SVGSTKRVSRSFGLKCSANSGGATMSAVYKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDGSFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETELF 155          
BLAST of DC887289 vs. ExPASy Swiss-Prot
Match: FER2_RAPSA (Ferredoxin, root R-B2 OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 9.275e-40
Identity = 73/97 (75.26%), Postives = 86/97 (88.66%), Query Frame = -2
Query:  196 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 486
            AVYKVKLIGP GEENEF+  DD +I+D+AE+ G++LPYSCRAGACSTCAGQ+V G VDQS+GSFL+D   EKGFVLTCVAYP SDCVI+THKE+EL+
Sbjct:    2 AVYKVKLIGPEGEENEFEVQDDQFILDAAEEAGVDLPYSCRAGACSTCAGQIVKGQVDQSEGSFLEDDHFEKGFVLTCVAYPQSDCVIHTHKETELF 98          
BLAST of DC887289 vs. ExPASy Swiss-Prot
Match: FER6_MAIZE (Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 4.603e-39
Identity = 79/138 (57.25%), Postives = 105/138 (76.09%), Query Frame = -2
Query:  196 AAPRSKKFSLVKSPGSLGSTRSVSKAFGLKCSS-FKASAMAV-YKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 603
            AAP +   S        G  R  ++A G + SS F ASA AV +KVKL+GP+G E+EF+APDD YI+++AE  G+ELP+SCRAG+CSTCAG+M +G VDQS+GSFLDD QM +G++LTC++YP +DCVI+THKE +LY
Sbjct:   24 AAPAANTLSFA------GHARQAARASGPRLSSRFVASAAAVLHKVKLVGPDGTEHEFEAPDDTYILEAAETAGVELPFSCRAGSCSTCAGRMSAGEVDQSEGSFLDDGQMAEGYLLTCISYPKADCVIHTHKEEDLY 155          
BLAST of DC887289 vs. ExPASy Swiss-Prot
Match: FER1_RAPSA (Ferredoxin, root R-B1 OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 4.603e-39
Identity = 72/97 (74.23%), Postives = 85/97 (87.63%), Query Frame = -2
Query:  196 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 486
            AVYKVKLIGP+G+ENEFD PDD YI+D+AE+ G++LPYSCRAGACSTCAG++  G VDQSDGSFL+D   EKG+VLTCVAYP SD VI+THKE EL+
Sbjct:    2 AVYKVKLIGPDGQENEFDVPDDQYILDAAEEAGVDLPYSCRAGACSTCAGKIEKGQVDQSDGSFLEDHHFEKGYVLTCVAYPQSDLVIHTHKEEELF 98          
BLAST of DC887289 vs. ExPASy Swiss-Prot
Match: FER1_PEA (Ferredoxin-1, chloroplastic OS=Pisum sativum GN=PETF PE=1 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 7.349e-37
Identity = 81/145 (55.86%), Postives = 103/145 (71.03%), Query Frame = -2
Query:  199 TSCLFQAAPRSKKFSLVKSPGSLGSTRSVSKAF-GLKCSSFK---ASAMAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 621
            T  L+  A  +        P S+ +T++ S  F GLK S  +   A AMA YKVKL+ P+G + EF+ P D YI+D AE+ G++LPYSCRAG+CS+CAG++V G VDQSDGSFLDD+Q+E GFVLTCVAYPTSD VI THKE +L
Sbjct:    4 TPALYGTAVSTSFLRTQPMPMSVTTTKAFSNGFLGLKTSLKRGDLAVAMASYKVKLVTPDGTQ-EFECPSDVYILDHAEEVGIDLPYSCRAGSCSSCAGKVVGGEVDQSDGSFLDDEQIEAGFVLTCVAYPTSDVVIETHKEEDL 147          
BLAST of DC887289 vs. ExPASy Swiss-Prot
Match: FER1_MESCR (Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.879e-35
Identity = 75/144 (52.08%), Postives = 101/144 (70.14%), Query Frame = -2
Query:  199 TSCLFQAAPRSKKFSLVKSPGSLGSTRSVSKA-FGLKCSSFKA--SAMAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 621
            T+     A  S  F+    P +     +V +A FGLK S+ +   +AMA YKV L+ P G++ E + PDD YI+D+AE+ G++LPYSCRAG+CS+CAG++ SGSV+Q DGSFLDD Q+++G+VLTCVAYPT D  I THKE EL
Sbjct:    4 TTAALSGATMSTAFAPKTPPMTAALPTNVGRALFGLKSSASRGRVTAMAAYKVTLVTPEGKQ-ELECPDDVYILDAAEEAGIDLPYSCRAGSCSSCAGKVTSGSVNQDDGSFLDDDQIKEGWVLTCVAYPTGDVTIETHKEEEL 146          
BLAST of DC887289 vs. ExPASy Swiss-Prot
Match: FER1_NOSMU (Ferredoxin-1 OS=Nostoc muscorum PE=1 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 8.984e-35
Identity = 68/96 (70.83%), Postives = 78/96 (81.25%), Query Frame = -2
Query:  196 VYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 483
            VYKV L+   G E   D PDD YI+D AED G++LPYSCRAGACSTCAG++VSG+VDQSD SFLDD Q+EKG+VLTCVAYPTSD  I THKE +LY
Sbjct:    4 VYKVTLVDQEGTETTIDVPDDEYILDIAEDQGLDLPYSCRAGACSTCAGKIVSGTVDQSDQSFLDDDQIEKGYVLTCVAYPTSDLKIETHKEEDLY 99          
BLAST of DC887289 vs. ExPASy Swiss-Prot
Match: FER_SYNY4 (Ferredoxin OS=Synechocystis sp. (strain PCC 6714) PE=1 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.173e-34
Identity = 68/98 (69.39%), Postives = 81/98 (82.65%), Query Frame = -2
Query:  196 MAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 489
            MA Y VKLI P+GE N  +  DD YI+D+AE+ G++LPYSCRAGACSTCAG++ +GSVDQSD SFLDD Q+E G+VLTCVAYPTSDC I THKE +LY
Sbjct:    1 MASYTVKLITPDGE-NSIECSDDTYILDAAEEAGLDLPYSCRAGACSTCAGKITAGSVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDLY 97          
BLAST of DC887289 vs. ExPASy Swiss-Prot
Match: FERA_ALOMA (Ferredoxin-A OS=Alocasia macrorrhiza PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.173e-34
Identity = 67/96 (69.79%), Postives = 82/96 (85.42%), Query Frame = -2
Query:  199 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDTGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 486
            A YKVKL+ P G++ EFD PDD YI+D AE+ G++LPYSCRAG+CS+CAG++  G VDQSDGSFLDD+QME+G+VLTCVA+PTSD VI THKE EL
Sbjct:    1 ATYKVKLVTPQGQQ-EFDCPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKVKQGEVDQSDGSFLDDEQMEQGWVLTCVAFPTSDVVIETHKEEEL 95          
The following BLAST results are available for this feature:
BLAST of DC887289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER3_MAIZE2.692e-4766.21Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE... [more]
FER3_ARATH1.336e-4669.92Ferredoxin-3, chloroplastic OS=Arabidopsis thalian... [more]
FER2_RAPSA9.275e-4075.26Ferredoxin, root R-B2 OS=Raphanus sativus PE=1 SV=... [more]
FER6_MAIZE4.603e-3957.25Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE... [more]
FER1_RAPSA4.603e-3974.23Ferredoxin, root R-B1 OS=Raphanus sativus PE=1 SV=... [more]
FER1_PEA7.349e-3755.86Ferredoxin-1, chloroplastic OS=Pisum sativum GN=PE... [more]
FER1_MESCR6.879e-3552.08Ferredoxin-1, chloroplastic OS=Mesembryanthemum cr... [more]
FER1_NOSMU8.984e-3570.83Ferredoxin-1 OS=Nostoc muscorum PE=1 SV=2[more]
FER_SYNY41.173e-3469.39Ferredoxin OS=Synechocystis sp. (strain PCC 6714) ... [more]
FERA_ALOMA1.173e-3469.79Ferredoxin-A OS=Alocasia macrorrhiza PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionDC887289 EIC Citrus sinensis cDNA clone EIC0140 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887289 ID=DC887289; Name=DC887289; organism=Citrus sinensis; type=EST; length=631bp
AATGTTTTTGGCTGCATATATCATCATAACGAGAGAATTTCAATCATATA
TTGTAATCATAAAATATGAAAGACTCTCAACACAATATCATGATGCTAAA
GATGAACACAAGCAAATATCAACAGTTTCTTCCACCGTTCTAGCACAAAT
GTGGATCCCAGAAAGCAAACGCCAAGCTCGTAACATTATTATTCAGTAAA
GTTCAGATTCCTTGTGTGTGTAAATTACACAATCCGATGTAGGATATGCA
ACGCATGTAAGCACAAAACCTTTCTCCATCTGCTTATCATCAAGGAATGA
TCCATCTGATTGGTCAACGGAGCCTGAAACCATCTGCCCAGCACAAGTAG
AGCAGGCACCAGCCCGACATGAGTAGGGTAGCTCCATTCCGGTATCTTCG
GCAGAGTCTATGATGTAAGCATCATCGGGGGCATCAAACTCATTCTCCTC
TCCGTTTGGTCCAATCAGTTTCACTTTGTAAACGGCCATTGCAGATGCTT
TGAATGAAGAACACTTCAGTCCAAATGCTTTAGAAACACTCCTGGTCGAA
CCCAGGGAACCCGGGCTCTTGACCAAAGAAAATTTTTTGCTTCGGGGAGC
AGCCTGGAATAAGCAAGATGTGGGAAGTCTC
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