FC921893

Overview
NameFC921893
Unique NameFC921893
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length412
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11948 contig Csv1_Contig11948:739..1150. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC921893 vs. ExPASy Swiss-Prot
Match: TOCC_ARATH (Tocopherol cyclase, chloroplastic OS=Arabidopsis thaliana GN=VTE1 PE=1 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 4.957e-71
Identity = 116/137 (84.67%), Postives = 127/137 (92.70%), Query Frame = 3 
Query:    3 RPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVL-DSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGY 410
            RPVYGWG+VG+KQ STAGW AAFPVFEPHWQICMAGGLSTGWIEW GERFEF+DAPSYSEKNWGG FPRKWFWVQCNVFEGATGEVALTAGGGLRQLP L +++ENAA++ +HYDG +YEFVPWNGVV WE+S WGY
Sbjct:  232 RPVYGWGDVGAKQKSTAGWPAAFPVFEPHWQICMAGGLSTGWIEWGGERFEFRDAPSYSEKNWGGGFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPGLTETYENAALVCVHYDGKMYEFVPWNGVVRWEMSPWGY 368
[Close]
BLAST of FC921893 vs. ExPASy Swiss-Prot
Match: TOCC_MAIZE (Probable tocopherol cyclase, chloroplastic OS=Zea mays GN=SDX1 PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 2.230e-63
Identity = 101/135 (74.81%), Postives = 119/135 (88.15%), Query Frame = 3 
Query:    3 RPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWG 407
            RPVYGWG+V SKQ STAGWLAAFP FEPHWQICMA GLSTGWIEWDGERFEF++APSYSEKNWGG FPRKW+W+QCNVF GA+GEV+LTA GGLR++ + D++E+ ++IGIHY+G  +EFVPW G VSW+I  WG
Sbjct:  221 RPVYGWGDVKSKQLSTAGWLAAFPFFEPHWQICMARGLSTGWIEWDGERFEFENAPSYSEKNWGGGFPRKWYWIQCNVFPGASGEVSLTAAGGLRKIGLGDTYESPSLIGIHYEGQFFEFVPWTGTVSWDIGLWG 355
The following BLAST results are available for this feature:
BLAST of FC921893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TOCC_ARATH4.957e-7184.67Tocopherol cyclase, chloroplastic OS=Arabidopsis t... [more]
TOCC_MAIZE2.230e-6374.81Probable tocopherol cyclase, chloroplastic OS=Zea ... [more]
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Properties
Property NameValue
Genbank descriptionC06053F03T7 RindPdigS Citrus sinensis cDNA clone C06053F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921893 ID=FC921893; Name=FC921893; organism=Citrus sinensis; type=EST; length=412bp
CTCGGCCTGTTTATGGATGGGGTAATGTTGGGTCAAAACAAAATTCAACA
GCAGGCTGGCTAGCAGCTTTTCCAGTATTCGAACCACATTGGCAAATATG
CATGGCAGGCGGACTTTCAACAGGTTGGATAGAGTGGGATGGCGAAAGGT
TTGAATTTCAAGATGCTCCTTCATATTCAGAAAAGAATTGGGGTGGAGCC
TTCCCTAGAAAGTGGTTTTGGGTCCAGTGTAATGTCTTTGAAGGTGCCAC
TGGAGAGGTTGCTCTGACAGCAGGTGGTGGGTTGAGGCAACTACCTGTAT
TGGACAGCTTTGAAAATGCTGCAATGATTGGAATACACTATGATGGAATT
TTATATGAGTTTGTGCCATGGAATGGTGTGGTAAGTTGGGAGATTTCGCA
ATGGGGTTACTG
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