FC921892

Overview
NameFC921892
Unique NameFC921892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length278
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6955 contig Csv1_Contig6955:90..367. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: PDR1_TOBAC (Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.031e-44
Identity = 87/91 (95.60%), Postives = 88/91 (96.70%), Query Frame = -2
Query:    2 AVELVANPSIIFMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPG 274
            AVELVANPSIIFMDEPTSGLD RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLI YFE+ PG
Sbjct: 1000 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLIKYFESNPG 1090          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: PDR1_NICPL (Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 5.115e-44
Identity = 86/91 (94.51%), Postives = 87/91 (95.60%), Query Frame = -2
Query:    2 AVELVANPSIIFMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPG 274
            AVELVANPSIIFMDEPTSGLD RAAAIVMR VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR SCHLI YFE+IPG
Sbjct: 1001 AVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRQSCHLIKYFESIPG 1091          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: PDR7_ORYSJ (Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 7.386e-43
Identity = 84/91 (92.31%), Postives = 87/91 (95.60%), Query Frame = -2
Query:    2 AVELVANPSIIFMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPG 274
            AVELVANPSIIFMDEPTSGLD RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG+EIYVGPLG +SCHLI+YFE I G
Sbjct: 1009 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGHNSCHLINYFEGIQG 1099          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: TUR2_SPIPO (Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrrhiza GN=TUR2 PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.393e-41
Identity = 83/91 (91.21%), Postives = 85/91 (93.41%), Query Frame = -2
Query:    2 AVELVANPSIIFMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPG 274
            AVELVANPSIIFMDEPTSGLD RAAAIVMR VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG+EIYVGPLGR S HLI YFE+I G
Sbjct: 1006 AVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGRQSSHLIKYFESIDG 1096          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: PDR3_ORYSJ (Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.819e-41
Identity = 82/91 (90.11%), Postives = 85/91 (93.41%), Query Frame = -2
Query:    2 AVELVANPSIIFMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPG 274
            AVELVANPSIIFMDEPTSGLD RAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFEAFDELFLMKRGG+EIY GPLG HS  LI YFE+IPG
Sbjct: 1023 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYAGPLGHHSSELIKYFESIPG 1113          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: PDR3_ORYSI (Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.819e-41
Identity = 82/91 (90.11%), Postives = 85/91 (93.41%), Query Frame = -2
Query:    2 AVELVANPSIIFMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPG 274
            AVELVANPSIIFMDEPTSGLD RAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFEAFDELFLMKRGG+EIY GPLG HS  LI YFE+IPG
Sbjct: 1023 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYAGPLGHHSSELIKYFESIPG 1113          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: AB40G_ARATH (ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 2.376e-41
Identity = 82/91 (90.11%), Postives = 86/91 (94.51%), Query Frame = -2
Query:    2 AVELVANPSIIFMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPG 274
            AVELVANPSIIFMDEPTSGLD RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL+KRGG+EIYVGPLG  S HLI+YFE+I G
Sbjct:  988 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGEEIYVGPLGHESTHLINYFESIQG 1078          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: PDR1_ORYSJ (Probable pleiotropic drug resistance protein 1 OS=Oryza sativa subsp. japonica GN=PDR1 PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 6.913e-41
Identity = 82/91 (90.11%), Postives = 84/91 (92.31%), Query Frame = -2
Query:    2 AVELVANPSIIFMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPG 274
            AVELVANPSIIFMDEPTSGLD RAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFEAFDELFLMKRGG+EIYVGPLG HS  LI YFE I G
Sbjct: 1034 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGHHSSELIKYFEGIQG 1124          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: PDR2_ORYSJ (Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.540e-40
Identity = 82/91 (90.11%), Postives = 83/91 (91.21%), Query Frame = -2
Query:    2 AVELVANPSIIFMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPG 274
            AVELVANPSIIFMDEPTSGLD RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG+EIYVGPLG  S  LI YFE I G
Sbjct: 1030 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGHQSSELIKYFEGIKG 1120          
BLAST of FC921892 vs. ExPASy Swiss-Prot
Match: PDR4_ORYSJ (Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 9.983e-40
Identity = 80/91 (87.91%), Postives = 85/91 (93.41%), Query Frame = -2
Query:    2 AVELVANPSIIFMDEPTSGLDTRAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPG 274
            AVELVANPSIIFMDEPTSGLD RAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFEAFDELFLMKRGG+EIYVGP+G++S  LI YFE I G
Sbjct: 1015 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPVGQNSSKLIEYFEGIDG 1105          
The following BLAST results are available for this feature:
BLAST of FC921892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
PDR1_TOBAC1.031e-4495.60Pleiotropic drug resistance protein 1 OS=Nicotiana... [more]
PDR1_NICPL5.115e-4494.51Pleiotropic drug resistance protein 1 OS=Nicotiana... [more]
PDR7_ORYSJ7.386e-4392.31Putative pleiotropic drug resistance protein 7 OS=... [more]
TUR2_SPIPO1.393e-4191.21Pleiotropic drug resistance protein TUR2 OS=Spirod... [more]
PDR3_ORYSJ1.819e-4190.11Pleiotropic drug resistance protein 3 OS=Oryza sat... [more]
PDR3_ORYSI1.819e-4190.11Pleiotropic drug resistance protein 3 OS=Oryza sat... [more]
AB40G_ARATH2.376e-4190.11ABC transporter G family member 40 OS=Arabidopsis ... [more]
PDR1_ORYSJ6.913e-4190.11Probable pleiotropic drug resistance protein 1 OS=... [more]
PDR2_ORYSJ1.540e-4090.11Probable pleiotropic drug resistance protein 2 OS=... [more]
PDR4_ORYSJ9.983e-4087.91Pleiotropic drug resistance protein 4 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionC06053F02T7 RindPdigS Citrus sinensis cDNA clone C06053F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921892 ID=FC921892; Name=FC921892; organism=Citrus sinensis; type=EST; length=278bp
CTCCGGGGATTGCTTCGAAATAGCTGATAAGATGGCAAGAATGACGACCC
AATGGCCCGACATAAATTTCTTGTCCCCCTCGCTTCATTAGGAATAGCTC
ATCAAAAGCTTCAAATATGTCAATGCTTGGTTGATGAATCGTGCACACTA
CCGTCCTTCCAGTGTCCACTGTGTTTCTAACAGTTCTCATAACAATTGCA
GCGGCTCTTGTATCTAGTCCTGAGGTTGGCTCATCCATAAATATGATGGA
TGGGTTAGCCACAAGCTCAACCGCCCGC
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