CN184194

Overview
NameCN184194
Unique NameCN184194
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length550
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184194 vs. ExPASy Swiss-Prot
Match: UGDH_SOYBN (UDP-glucose 6-dehydrogenase OS=Glycine max PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.641e-44
Identity = 62/74 (83.78%), Postives = 68/74 (91.89%), Query Frame = -3
Query:  228 YQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVAKLREIGFIVYSIGKPLDPWHKDTLAVA 449
            Y+A KDAHG+CILTEWDEFKTLDYQKIFDNM+KPA++FDGRNI+D  KLREIGFIVYSIGKPLDPW KD  AVA
Sbjct:  407 YEATKDAHGLCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNIVDADKLREIGFIVYSIGKPLDPWLKDMPAVA 480          

HSP 2 Score: 61.6178 bits (148), Expect = 9.641e-44
Identity = 26/33 (78.79%), Postives = 28/33 (84.85%), Query Frame = -2
Query:  451 RDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDA 549
            RDLSM KFDWDHPIHLQP SP   K+V+VVWDA
Sbjct:  374 RDLSMNKFDWDHPIHLQPTSPTTVKKVSVVWDA 406          
BLAST of CN184194 vs. ExPASy Swiss-Prot
Match: UGDH2_ARATH (Probable UDP-glucose 6-dehydrogenase 2 OS=Arabidopsis thaliana GN=UGD2 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.720e-43
Identity = 58/69 (84.06%), Postives = 65/69 (94.20%), Query Frame = -3
Query:  243 YQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVAKLREIGFIVYSIGKPLDPWHKD 449
            Y+A KDAH VC+LTEWDEFK+LDYQKIFDNM+KPA+IFDGRNI++V KLREIGFIVYSIGKPLDPW KD
Sbjct:  407 YEATKDAHAVCVLTEWDEFKSLDYQKIFDNMQKPAFIFDGRNIMNVNKLREIGFIVYSIGKPLDPWLKD 475          

HSP 2 Score: 65.0846 bits (157), Expect = 4.720e-43
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = -2
Query:  451 RDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDA 549
            RDLSMKKFDWDHP+HLQPMSP   KQV+V WDA
Sbjct:  374 RDLSMKKFDWDHPLHLQPMSPTTVKQVSVTWDA 406          
BLAST of CN184194 vs. ExPASy Swiss-Prot
Match: UGDH1_ARATH (Probable UDP-glucose 6-dehydrogenase 1 OS=Arabidopsis thaliana GN=UGD1 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 6.662e-42
Identity = 57/74 (77.03%), Postives = 67/74 (90.54%), Query Frame = -3
Query:  228 YQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVAKLREIGFIVYSIGKPLDPWHKDTLAVA 449
            Y+A KDAHG+CI+TEWDEFK LD+QKIFDNM+KPA++FDGRNI+++ KLREIGFIVYSIGKPLD W KD  AVA
Sbjct:  407 YEATKDAHGICIMTEWDEFKNLDFQKIFDNMQKPAFVFDGRNIMNLQKLREIGFIVYSIGKPLDDWLKDMPAVA 480          

HSP 2 Score: 62.7734 bits (151), Expect = 6.662e-42
Identity = 26/33 (78.79%), Postives = 27/33 (81.82%), Query Frame = -2
Query:  451 RDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDA 549
            RDLSM KFDWDHP+HLQPMSP   KQV V WDA
Sbjct:  374 RDLSMNKFDWDHPLHLQPMSPTTVKQVTVTWDA 406          
BLAST of CN184194 vs. ExPASy Swiss-Prot
Match: UGDH_DROME (UDP-glucose 6-dehydrogenase OS=Drosophila melanogaster GN=sgl PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.105e-13
Identity = 34/61 (55.74%), Postives = 45/61 (73.77%), Query Frame = -3
Query:  267 YQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVAKLREIGFIVYSIGK 449
            Y A +  H + I TEWDEF  LD+++I+ +M KPAYIFDGR ILD  +L++IGF V +IGK
Sbjct:  399 YSAVRATHALVICTEWDEFVDLDFKRIYQSMMKPAYIFDGRKILDHERLQQIGFHVQTIGK 459          
BLAST of CN184194 vs. ExPASy Swiss-Prot
Match: UGDH_CAEEL (UDP-glucose 6-dehydrogenase OS=Caenorhabditis elegans GN=sqv-4 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.160e-13
Identity = 35/64 (54.69%), Postives = 45/64 (70.31%), Query Frame = -3
Query:  258 YQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVAKLREIGFIVYSIGKPLD 449
            Y AA+ AH + +LTEWDEF  L+Y +I ++M+ PA IFDGR ILD   LREIGF  ++IG   D
Sbjct:  407 YAAARGAHAIVVLTEWDEFVELNYSQIHNDMQHPAAIFDGRLILDQKALREIGFRTFAIGTSPD 470          
BLAST of CN184194 vs. ExPASy Swiss-Prot
Match: UGDH_PONAB (UDP-glucose 6-dehydrogenase OS=Pongo abelii GN=UGDH PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.764e-11
Identity = 34/63 (53.97%), Postives = 43/63 (68.25%), Query Frame = -3
Query:  267 YQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVA--KLREIGFIVYSIGK 449
            Y+A   AH V I TEWD FK LDY++I   M KPA+IFDGR +LD    +L+ IGF + +IGK
Sbjct:  402 YEACDGAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464          
BLAST of CN184194 vs. ExPASy Swiss-Prot
Match: UGDH_HUMAN (UDP-glucose 6-dehydrogenase OS=Homo sapiens GN=UGDH PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.764e-11
Identity = 34/63 (53.97%), Postives = 43/63 (68.25%), Query Frame = -3
Query:  267 YQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVA--KLREIGFIVYSIGK 449
            Y+A   AH V I TEWD FK LDY++I   M KPA+IFDGR +LD    +L+ IGF + +IGK
Sbjct:  402 YEACDGAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464          
BLAST of CN184194 vs. ExPASy Swiss-Prot
Match: UGDH_BOVIN (UDP-glucose 6-dehydrogenase OS=Bos taurus GN=UGDH PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.764e-11
Identity = 34/63 (53.97%), Postives = 43/63 (68.25%), Query Frame = -3
Query:  267 YQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVA--KLREIGFIVYSIGK 449
            Y+A   AH V I TEWD FK LDY++I   M KPA+IFDGR +LD    +L+ IGF + +IGK
Sbjct:  402 YEACDGAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464          
BLAST of CN184194 vs. ExPASy Swiss-Prot
Match: UGDH_MOUSE (UDP-glucose 6-dehydrogenase OS=Mus musculus GN=Ugdh PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.303e-11
Identity = 33/63 (52.38%), Postives = 44/63 (69.84%), Query Frame = -3
Query:  267 YQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILD--VAKLREIGFIVYSIGK 449
            Y+A   AH + I TEWD FK LDY++I   M KPA+IFDGR +LD   ++L+ IGF + +IGK
Sbjct:  402 YEACDGAHALVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHSELQTIGFQIETIGK 464          
BLAST of CN184194 vs. ExPASy Swiss-Prot
Match: UGDH_RAT (UDP-glucose 6-dehydrogenase OS=Rattus norvegicus GN=Ugdh PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.929e-11
Identity = 33/63 (52.38%), Postives = 43/63 (68.25%), Query Frame = -3
Query:  267 YQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVA--KLREIGFIVYSIGK 449
            Y+A   AH + I TEWD FK LDY++I   M KPA+IFDGR +LD    +L+ IGF + +IGK
Sbjct:  402 YEACDGAHALVICTEWDMFKELDYERIHKRMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464          
The following BLAST results are available for this feature:
BLAST of CN184194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
UGDH_SOYBN9.641e-4483.78UDP-glucose 6-dehydrogenase OS=Glycine max PE=2 SV... [more]
UGDH2_ARATH4.720e-4384.06Probable UDP-glucose 6-dehydrogenase 2 OS=Arabidop... [more]
UGDH1_ARATH6.662e-4277.03Probable UDP-glucose 6-dehydrogenase 1 OS=Arabidop... [more]
UGDH_DROME1.105e-1355.74UDP-glucose 6-dehydrogenase OS=Drosophila melanoga... [more]
UGDH_CAEEL7.160e-1354.69UDP-glucose 6-dehydrogenase OS=Caenorhabditis eleg... [more]
UGDH_PONAB1.764e-1153.97UDP-glucose 6-dehydrogenase OS=Pongo abelii GN=UGD... [more]
UGDH_HUMAN1.764e-1153.97UDP-glucose 6-dehydrogenase OS=Homo sapiens GN=UGD... [more]
UGDH_BOVIN1.764e-1153.97UDP-glucose 6-dehydrogenase OS=Bos taurus GN=UGDH ... [more]
UGDH_MOUSE2.303e-1152.38UDP-glucose 6-dehydrogenase OS=Mus musculus GN=Ugd... [more]
UGDH_RAT3.929e-1152.38UDP-glucose 6-dehydrogenase OS=Rattus norvegicus G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005C08_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184194 ID=CN184194; Name=CN184194; organism=Citrus sinensis; type=EST; length=550bp
TTTTTTTTTTTTTTTTTGAAGGGAATATGAGGCTTATTATAAGGGCATAT
TAAAGAAAGTTCATGCTTCATAGTACATCGAAATTTCTAATGATATGACA
AAAACTATAAATTTAGAGCCATAATGCAATGAAAACTTAAAGAAAAAGAT
TCAAAGAATAAAACTGCTTTTCTCAAGACAGTCCTAGCTTTAGCCCTCGT
GAGGGGAAACTCATCCTTAATTCCTTATGCCACGGCGAGAGTATCTTTGT
GCCAAGGATCCAATGGCTTCCCAATTGAGTAAACAATAAATCCAATCTCC
CTCAGCTTTGCAACATCCAAAATGTTTCGCCCATCAAATATATATGCAGG
CTTCCGCATGTTATCGAAAATCTTCTGGTAATCGAGTGTCTTGAACTCAT
CCCATTCAGTAAGAATGCAGACACCATGGGCATCCTTAGCTGCCTGATAA
TGCATCCCAAACCACGTTCACTTGCTTCGAAGCAGGGGGGCTCATCGGCT
GCAGGTGAATTGGATGATCCCAATCAAACTTTTTCATCGAAAGATCCCTT
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