CN184190

Overview
NameCN184190
Unique NameCN184190
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length575
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184190 vs. ExPASy Swiss-Prot
Match: UFM1_ARATH (Probable ubiquitin-fold modifier 1 OS=Arabidopsis thaliana GN=At1g77710 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 4.762e-42
Identity = 84/87 (96.55%), Postives = 86/87 (98.85%), Query Frame = -1
Query:  276 MASGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGNVFLKHGSELRLIPRDRVGA 536
            MA+GGKVSFKVTLTSDPKLPFKVFSVPE APFTAVLKFAAEEFKVPPQTSAIITNDG+GINPQQSAGNVFLKHGSELRLIPRDRVGA
Sbjct:    1 MATGGKVSFKVTLTSDPKLPFKVFSVPEGAPFTAVLKFAAEEFKVPPQTSAIITNDGIGINPQQSAGNVFLKHGSELRLIPRDRVGA 87          
BLAST of CN184190 vs. ExPASy Swiss-Prot
Match: UFM1_ORYSJ (Probable ubiquitin-fold modifier 1 OS=Oryza sativa subsp. japonica GN=Os01g0962400 PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 4.032e-41
Identity = 83/86 (96.51%), Postives = 84/86 (97.67%), Query Frame = -1
Query:  276 ASGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGNVFLKHGSELRLIPRDRVGA 533
            A GGKVSFK+ LTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGNVFLKHGSELRLIPRDRVGA
Sbjct:   12 AGGGKVSFKIILTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGNVFLKHGSELRLIPRDRVGA 97          
BLAST of CN184190 vs. ExPASy Swiss-Prot
Match: UFM1_CHLIN (Probable ubiquitin-fold modifier 1 OS=Chlamydomonas incerta GN=PR46a PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.214e-37
Identity = 77/85 (90.59%), Postives = 81/85 (95.29%), Query Frame = -1
Query:  267 KVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGNVFLKHGSELRLIPRDRVGASRM 521
            KV+FKVTLTSDPKLPF+VFSVPE APFTAVLKFAAEEFKVP QTSAIITNDGVGINPQQ+AGNVFLKHGSELRLIPRDRVG S +
Sbjct:   13 KVTFKVTLTSDPKLPFRVFSVPEEAPFTAVLKFAAEEFKVPAQTSAIITNDGVGINPQQTAGNVFLKHGSELRLIPRDRVGGSSL 97          
BLAST of CN184190 vs. ExPASy Swiss-Prot
Match: UFM1_CHLRE (Probable ubiquitin-fold modifier 1 OS=Chlamydomonas reinhardtii GN=PR46a PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 7.868e-37
Identity = 77/88 (87.50%), Postives = 82/88 (93.18%), Query Frame = -1
Query:  279 KKMASGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGNVFLKHGSELRLIPRDRVG 542
            ++ A+  KV+FKVTLTSDPKLPF+VFSVPE APFTAVLKFAAEEFKVP QTSAIITNDGVGINPQQ AGNVFLKHGSELRLIPRDRVG
Sbjct:    3 QQAAAVTKVTFKVTLTSDPKLPFRVFSVPEEAPFTAVLKFAAEEFKVPAQTSAIITNDGVGINPQQIAGNVFLKHGSELRLIPRDRVG 90          
BLAST of CN184190 vs. ExPASy Swiss-Prot
Match: UFM1_CAEEL (Probable ubiquitin-fold modifier 1 OS=Caenorhabditis elegans GN=tag-277 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.531e-35
Identity = 71/84 (84.52%), Postives = 77/84 (91.67%), Query Frame = -1
Query:  279 SGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGNVFLKHGSELRLIPRDRVG 530
            +G KV+FK+TLTSDPKLPFKV SVPE+ PFTAVLKFAAEEFKVP  TSAIITNDGVG+NP Q AGN+FLKHGSELRLIPRDRVG
Sbjct:   10 AGSKVTFKITLTSDPKLPFKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGVGVNPAQPAGNIFLKHGSELRLIPRDRVG 93          
BLAST of CN184190 vs. ExPASy Swiss-Prot
Match: UFM1_CAEBR (Probable ubiquitin-fold modifier 1 OS=Caenorhabditis briggsae GN=CBG12253 PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.531e-35
Identity = 72/85 (84.71%), Postives = 78/85 (91.76%), Query Frame = -1
Query:  279 ASGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGNVFLKHGSELRLIPRDRVG 533
            A   KV+FK+TLTSDPKLPFKV SVPEAAPFT+VL++AAEEFKVP  TSAIITNDGVGINP QSAGN+FLKHGSELRLIPRDRVG
Sbjct:    7 APAAKVTFKITLTSDPKLPFKVLSVPEAAPFTSVLRYAAEEFKVPAATSAIITNDGVGINPAQSAGNIFLKHGSELRLIPRDRVG 91          
BLAST of CN184190 vs. ExPASy Swiss-Prot
Match: UFM1_RAT (Ubiquitin-fold modifier 1 OS=Rattus norvegicus GN=Ufm1 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.256e-34
Identity = 70/82 (85.37%), Postives = 77/82 (93.90%), Query Frame = -1
Query:  276 KVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGNVFLKHGSELRLIPRDRVGA 521
            KVSFK+TLTSDP+LP+KV SVPE+ PFTAVLKFAAEEFKVP  TSAIITNDG+GINP Q+AGNVFLKHGSELRLIPRDRVG+
Sbjct:    3 KVSFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRLIPRDRVGS 84          
BLAST of CN184190 vs. ExPASy Swiss-Prot
Match: UFM1_PONAB (Ubiquitin-fold modifier 1 OS=Pongo abelii GN=UFM1 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.143e-34
Identity = 69/82 (84.15%), Postives = 77/82 (93.90%), Query Frame = -1
Query:  276 KVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGNVFLKHGSELRLIPRDRVGA 521
            KVSFK+TLTSDP+LP+KV SVPE+ PFTAVLKFAAEEFKVP  TSAIITNDG+GINP Q+AGNVFLKHGSELR+IPRDRVG+
Sbjct:    3 KVSFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRVGS 84          
BLAST of CN184190 vs. ExPASy Swiss-Prot
Match: UFM1_MOUSE (Ubiquitin-fold modifier 1 OS=Mus musculus GN=Ufm1 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.143e-34
Identity = 69/82 (84.15%), Postives = 77/82 (93.90%), Query Frame = -1
Query:  276 KVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGNVFLKHGSELRLIPRDRVGA 521
            KVSFK+TLTSDP+LP+KV SVPE+ PFTAVLKFAAEEFKVP  TSAIITNDG+GINP Q+AGNVFLKHGSELR+IPRDRVG+
Sbjct:    3 KVSFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRVGS 84          
BLAST of CN184190 vs. ExPASy Swiss-Prot
Match: UFM1_MACFA (Ubiquitin-fold modifier 1 OS=Macaca fascicularis GN=UFM1 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.143e-34
Identity = 69/82 (84.15%), Postives = 77/82 (93.90%), Query Frame = -1
Query:  276 KVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGNVFLKHGSELRLIPRDRVGA 521
            KVSFK+TLTSDP+LP+KV SVPE+ PFTAVLKFAAEEFKVP  TSAIITNDG+GINP Q+AGNVFLKHGSELR+IPRDRVG+
Sbjct:    3 KVSFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRVGS 84          
The following BLAST results are available for this feature:
BLAST of CN184190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
UFM1_ARATH4.762e-4296.55Probable ubiquitin-fold modifier 1 OS=Arabidopsis ... [more]
UFM1_ORYSJ4.032e-4196.51Probable ubiquitin-fold modifier 1 OS=Oryza sativa... [more]
UFM1_CHLIN1.214e-3790.59Probable ubiquitin-fold modifier 1 OS=Chlamydomona... [more]
UFM1_CHLRE7.868e-3787.50Probable ubiquitin-fold modifier 1 OS=Chlamydomona... [more]
UFM1_CAEEL2.531e-3584.52Probable ubiquitin-fold modifier 1 OS=Caenorhabdit... [more]
UFM1_CAEBR2.531e-3584.71Probable ubiquitin-fold modifier 1 OS=Caenorhabdit... [more]
UFM1_RAT1.256e-3485.37Ubiquitin-fold modifier 1 OS=Rattus norvegicus GN=... [more]
UFM1_PONAB2.143e-3484.15Ubiquitin-fold modifier 1 OS=Pongo abelii GN=UFM1 ... [more]
UFM1_MOUSE2.143e-3484.15Ubiquitin-fold modifier 1 OS=Mus musculus GN=Ufm1 ... [more]
UFM1_MACFA2.143e-3484.15Ubiquitin-fold modifier 1 OS=Macaca fascicularis G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005C06_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184190 ID=CN184190; Name=CN184190; organism=Citrus sinensis; type=EST; length=575bp
TTGGATTGTGAGTCATTCTATTATTTATTTATTGAAATGATTATGGTGGT
CATTACAGAAATATTCATGCCTCATAGTTTCTTCCATTCTTTCAAAACTA
CAAATACTTTGCCTTTCACAACACAAGGATAATCTTTACCCAAGAAGTAT
GATGCATAAGATATAACTAATTAACTATGCCCCCAACATGATGAAAACTA
AAGCAATGGATTCAAATTAATCCAGGTGAACCAGTCCCTTCACTCCAACA
ATGATGCAGCTCCCACCATCCTTGAAGCACCAACCCTGTCACGGGGAATC
AACCGAAGCTCGGAACCATGTTTGAGGAAGACATTGCCTGCACTTTGCTG
AGGATTGATTCCCACACCATCGTTGGTGATGATAGCGCTAGTTTGAGGAG
GGACTTTGAATTCCTCGGCTGCGAATTTCAAAACGGCGGTAAACGGAGCC
GCTTCAGGAACGCTAAACACTTTGAAGGGAAGCTTAGGATCGGAGGTGAG
CGTAACCTTGAAGGAGACCTTTCCACCAGACGCCATTTTTTTTTAAAATT
CACAGAGGCAGCTTTGACATTCAAA
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