CN184170

Overview
NameCN184170
Unique NameCN184170
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length536
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184170 vs. ExPASy Swiss-Prot
Match: HSP71_ARATH (Heat shock cognate 70 kDa protein 1 OS=Arabidopsis thaliana GN=HSC70-1 PE=1 SV=3)

HSP 1 Score: 160.229 bits (404), Expect = 5.598e-39
Identity = 84/117 (71.79%), Postives = 89/117 (76.07%), Query Frame = -3
Query:  196 DEEPKKKVEAKNALENYAYNMRNTVKDEKIGSKLAPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ----XXXXXXXXXXXXXXXXXGSGAGPKIEEVD 534
            DEE KKKVEAKNALENYAYNMRNT++DEKIG KL  ADKKKIED+I+QAIQWL+ NQLAEADEFEDKMKELESICNPIIAKMYQ                       GAGPKIEEVD
Sbjct:  535 DEEHKKKVEAKNALENYAYNMRNTIQDEKIGEKLPAADKKKIEDSIEQAIQWLEGNQLAEADEFEDKMKELESICNPIIAKMYQGAGGEAGGPGASGMDDDAPPASGGAGPKIEEVD 651          
BLAST of CN184170 vs. ExPASy Swiss-Prot
Match: HSP7E_SPIOL (Chloroplast envelope membrane 70 kDa heat shock-related protein OS=Spinacia oleracea GN=SCE70 PE=1 SV=3)

HSP 1 Score: 159.844 bits (403), Expect = 7.311e-39
Identity = 82/111 (73.87%), Postives = 88/111 (79.28%), Query Frame = -3
Query:  202 DEEPKKKVEAKNALENYAYNMRNTVKDEKIGSKLAPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQXXXXXXXXXXXXXXXXXGSGAGPKIEE 534
            DEE KKKVE+KNALENYAYNMRN VKDEKIG+KL+ ADKKKIE+AID +IQWLD NQLAEADEF+DKMKELESICNPIIAKMYQ                 G GAGPKIEE
Sbjct:  535 DEEHKKKVESKNALENYAYNMRNIVKDEKIGAKLSEADKKKIEEAIDASIQWLDGNQLAEADEFDDKMKELESICNPIIAKMYQGAGGDMGGGMEDEGPTSGGGAGPKIEE 645          
BLAST of CN184170 vs. ExPASy Swiss-Prot
Match: HSP7C_PETHY (Heat shock cognate 70 kDa protein OS=Petunia hybrida GN=HSP70 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 7.311e-39
Identity = 83/117 (70.94%), Postives = 92/117 (78.63%), Query Frame = -3
Query:  196 DEEPKKKVEAKNALENYAYNMRNTVKDEKIGSKLAPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ----XXXXXXXXXXXXXXXXXGSGAGPKIEEVD 534
            DEE KKKVEAKNALENYAYNMRNT+KD+KI S+L+ ADKK+IEDAID+AI+WLD+NQLAEADEFEDKMKELESICNPIIAKMYQ                      +GAGPKIEEVD
Sbjct:  535 DEELKKKVEAKNALENYAYNMRNTIKDDKINSQLSAADKKRIEDAIDEAIKWLDNNQLAEADEFEDKMKELESICNPIIAKMYQGGAGGATMDEDGPSVGGSAGSQTGAGPKIEEVD 651          
BLAST of CN184170 vs. ExPASy Swiss-Prot
Match: HSP71_SOLLC (Heat shock cognate 70 kDa protein 1 OS=Solanum lycopersicum GN=HSC-I PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 7.311e-39
Identity = 85/114 (74.56%), Postives = 89/114 (78.07%), Query Frame = -3
Query:  196 DEEPKKKVEAKNALENYAYNMRNTVKDEKIGSKLAPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ-XXXXXXXXXXXXXXXXXGSGAGPKIEEVD 534
            DEE KKKVEAKN+LENYAYNMRNTVKDEKIGSKL+  DKKKIEDA+DQAI WL+SNQLAE DEFEDKMKELE ICNPIIAKMYQ                  GS AGPKIEEVD
Sbjct:  537 DEELKKKVEAKNSLENYAYNMRNTVKDEKIGSKLSSDDKKKIEDAVDQAISWLESNQLAEVDEFEDKMKELEGICNPIIAKMYQGAGGDAGVPMDDDAPPSGGSSAGPKIEEVD 650          
BLAST of CN184170 vs. ExPASy Swiss-Prot
Match: HSP72_SOLLC (Heat shock cognate 70 kDa protein 2 OS=Solanum lycopersicum GN=HSC-2 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 2.778e-38
Identity = 83/113 (73.45%), Postives = 89/113 (78.76%), Query Frame = -3
Query:  196 DEEPKKKVEAKNALENYAYNMRNTVKDEKIGSKLAPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQXXXXXXXXXXXXXXXXXGSGAGPKIEEVD 534
            DEE KKKVEAKNALENYAYNMRNT+KDEKI SKL+  D+ KIEDAI+QAIQWLD NQLAEA+EFEDKMKELES+CNPIIAKMYQ                 G GAGPKIEEVD
Sbjct:  535 DEEHKKKVEAKNALENYAYNMRNTIKDEKIASKLSADDRTKIEDAIEQAIQWLDGNQLAEAEEFEDKMKELESLCNPIIAKMYQ---GAGGDMDDEGPAPSGGGAGPKIEEVD 644          
BLAST of CN184170 vs. ExPASy Swiss-Prot
Match: HSP72_ARATH (Heat shock cognate 70 kDa protein 2 OS=Arabidopsis thaliana GN=HSC70-2 PE=2 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 2.778e-38
Identity = 81/119 (68.07%), Postives = 88/119 (73.95%), Query Frame = -3
Query:  196 DEEPKKKVEAKNALENYAYNMRNTVKDEKIGSKLAPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ------XXXXXXXXXXXXXXXXXGSGAGPKIEEVD 534
            DEE KKKVEAKNALENYAYNMRNT++DEKIG KL  ADKKK+ED+I++AIQWLD NQL EADEFEDKMKELES+CNPIIAKMYQ                         GAGPKIEEVD
Sbjct:  535 DEEHKKKVEAKNALENYAYNMRNTIRDEKIGEKLPAADKKKVEDSIEEAIQWLDGNQLGEADEFEDKMKELESVCNPIIAKMYQGGAGGEAGGPGASGMDEDEAPPASGGAGPKIEEVD 653          
BLAST of CN184170 vs. ExPASy Swiss-Prot
Match: HSP73_ARATH (Heat shock cognate 70 kDa protein 3 OS=Arabidopsis thaliana GN=HSC70-3 PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 8.083e-38
Identity = 81/115 (70.43%), Postives = 89/115 (77.39%), Query Frame = -3
Query:  196 DEEPKKKVEAKNALENYAYNMRNTVKDEKIGSKLAPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQXXXXXXXXXXXXXXXXXGS--GAGPKIEEVD 534
            DEE KKKV+AKNALENYAYNMRNT++DEKIG KLA  DKKKIED+I+ AI+WL++NQLAE DEFEDKMKELESICNPIIAKMYQ                  S  GAGPKIEEVD
Sbjct:  535 DEEHKKKVDAKNALENYAYNMRNTIRDEKIGEKLAGDDKKKIEDSIEAAIEWLEANQLAECDEFEDKMKELESICNPIIAKMYQGGEAGGPAAGGMDEDVPPSAGGAGPKIEEVD 649          
BLAST of CN184170 vs. ExPASy Swiss-Prot
Match: HSP70_MAIZE (Heat shock 70 kDa protein OS=Zea mays GN=HSP70 PE=3 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 4.012e-37
Identity = 81/115 (70.43%), Postives = 87/115 (75.65%), Query Frame = -3
Query:  196 DEEPKKKVEAKNALENYAYNMRNTVKDEKIGSKLAPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY--QXXXXXXXXXXXXXXXXXGSGAGPKIEEVD 534
            DEE KKKV+AKNALENYAYNMRNT+KD+KI SKL   DKKKIEDA+D AI WLDSNQLAE +EFEDKMKELE ICNPIIAKMY  +                 GSGAGPKIEEVD
Sbjct:  531 DEEVKKKVDAKNALENYAYNMRNTIKDDKIASKLPAEDKKKIEDAVDGAISWLDSNQLAEVEEFEDKMKELEGICNPIIAKMYXGEGAGMGAAAGMDEDAPSGGSGAGPKIEEVD 645          
BLAST of CN184170 vs. ExPASy Swiss-Prot
Match: HSP70_SOYBN (Heat shock 70 kDa protein OS=Glycine max GN=HSP70 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.600e-36
Identity = 76/113 (67.26%), Postives = 86/113 (76.11%), Query Frame = -3
Query:  196 DEEPKKKVEAKNALENYAYNMRNTVKDEKIGSKLAPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQXXXXXXXXXXXXXXXXXGSGAGPKIEEVD 534
            DEE KKKVEAKN+LENYAYNMRNT+KDEKIG KL+P +K+KIE A++ AIQWL+ NQ+AE DEFEDK KELE ICNPIIAKMYQ                  +GAGPKIEEVD
Sbjct:  534 DEEVKKKVEAKNSLENYAYNMRNTIKDEKIGGKLSPDEKQKIEKAVEDAIQWLEGNQMAEVDEFEDKQKELEGICNPIIAKMYQ-GAAGPGGDVPMGADMPAAGAGPKIEEVD 645          
BLAST of CN184170 vs. ExPASy Swiss-Prot
Match: HSP70_DAUCA (Heat shock 70 kDa protein OS=Daucus carota GN=HSP70 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 4.590e-33
Identity = 72/119 (60.50%), Postives = 84/119 (70.59%), Query Frame = -3
Query:  196 DEEPKKKVEAKNALENYAYNMRNTVKDEKIGSKLAPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQ------XXXXXXXXXXXXXXXXXGSGAGPKIEEVD 534
            DEE KKKVEAKNALENYAYNMRNT+KD+KI  KL   DK+KIE A+++AI+WL+ NQLAE DE EDK+KELE +CNPIIA++YQ                        SGAGPKIEEVD
Sbjct:  537 DEEVKKKVEAKNALENYAYNMRNTIKDDKIPGKLDAGDKEKIETAVNEAIEWLEKNQLAEVDELEDKLKELEGLCNPIIARLYQGRGDVPIGGPGDMPGGGYGGSRGSSGAGPKIEEVD 655          
The following BLAST results are available for this feature:
BLAST of CN184170 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
HSP71_ARATH5.598e-3971.79Heat shock cognate 70 kDa protein 1 OS=Arabidopsis... [more]
HSP7E_SPIOL7.311e-3973.87Chloroplast envelope membrane 70 kDa heat shock-re... [more]
HSP7C_PETHY7.311e-3970.94Heat shock cognate 70 kDa protein OS=Petunia hybri... [more]
HSP71_SOLLC7.311e-3974.56Heat shock cognate 70 kDa protein 1 OS=Solanum lyc... [more]
HSP72_SOLLC2.778e-3873.45Heat shock cognate 70 kDa protein 2 OS=Solanum lyc... [more]
HSP72_ARATH2.778e-3868.07Heat shock cognate 70 kDa protein 2 OS=Arabidopsis... [more]
HSP73_ARATH8.083e-3870.43Heat shock cognate 70 kDa protein 3 OS=Arabidopsis... [more]
HSP70_MAIZE4.012e-3770.43Heat shock 70 kDa protein OS=Zea mays GN=HSP70 PE=... [more]
HSP70_SOYBN2.600e-3667.26Heat shock 70 kDa protein OS=Glycine max GN=HSP70 ... [more]
HSP70_DAUCA4.590e-3360.50Heat shock 70 kDa protein OS=Daucus carota GN=HSP7... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005B19_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005B19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184170 ID=CN184170; Name=CN184170; organism=Citrus sinensis; type=EST; length=536bp
TTTTTTTTTTTGATGAAAAAAGTATATTGAGAAAACATAGAGAACACTTG
CAATGGGCTTTGAACAGACTTGTAAAAGATCAATCAAAACCCAAAAGTCA
AAACATGAAAATAAAATTAAAATTCCGAAACATCTAATCACCCTACCAAC
TTAACCCTCAACAGACAAAAGCCAGCAGAAAACGAGAGCTGCTTAGTCGA
CCTCCTCAATCTTGGGGCCAGCACCGCTACCACCAGCAGGAACATCGTCA
TCCATGGCACCACCCATGTCACCACCGGCACCCTGGTACATCTTTGCAAT
GATGGGGTTGCAGATGCTCTCCAATTCCTTCATCTTGTCCTCAAACTCAT
CAGCCTCTGCAAGCTGGTTGCTGTCCAACCATTGGATGGCCTGGTCGATC
GCATCTTCAATCTTCTTCTTATCCGCTGGTGCAAGCTTGGAACCAATCTT
CTCGTCCTTCACTGTGTTCCTCATGTTGTATGCATAGTTCTCCAAGGCAT
TCTTTGCCTCAACCTTCTTCTTGGGCTCTTCATCTT
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