CX676549

Overview
NameCX676549
Unique NameCX676549
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676549 vs. ExPASy Swiss-Prot
Match: SRG1_ARATH (Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.381e-52
Identity = 102/184 (55.43%), Postives = 130/184 (70.65%), Query Frame = -1
Query:  235 SMELKSLAMNLILKMGKVLNIKDQEMRNFFEN--GMQVMRMNYYPPCPQPEKVVGLTPHSDGCGLTILLQINEVEGLQIKKDRMWIPLTPLPNAFVVNVGDIMEIITNGKYRSIEHRATVNSVHERHSIAAFYYARYDGEVYPASSLISENTPSLFRRLTVXXXXXXXXXXXLSGKSYLDVLRI 780
            S E++S+A  LI KM + L IK +E+   F++   +Q MRMNYYPPCPQP++V+GLTPHSD  GLT+L+Q+N+VEGLQIKKD  W+P+ PLPNAF+VN+GD++EIITNG YRSIEHR  VNS  ER SIA F+      EV PA SL+     + F+RLT+           L GK+YLD LRI
Sbjct:  175 SSEVQSVAKILIAKMARALEIKPEELEKLFDDVDSVQSMRMNYYPPCPQPDQVIGLTPHSDSVGLTVLMQVNDVEGLQIKKDGKWVPVKPLPNAFIVNIGDVLEIITNGTYRSIEHRGVVNSEKERLSIATFHNVGMYKEVGPAKSLVERQKVARFKRLTMKEYNDGLFSRTLDGKAYLDALRI 358          
BLAST of CX676549 vs. ExPASy Swiss-Prot
Match: NCS1_COPJA (S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.832e-29
Identity = 73/186 (39.25%), Postives = 109/186 (58.60%), Query Frame = -1
Query:  235 SMELKSLAMNLILKMGKVLNIKDQ----EMRNFFENGMQVMRMNYYPPCPQPEKVVGLTPHSDGCGLTILLQINEVEGLQIKKDRMWIPLTPLPNAFVVNVGDIMEIITNGKYRSIEHRATVNSVHERHSIAAFYYARYDGEVYPASSLISENTPSLFRRLTVXXXXXXXXXXXLSGKSYLDVLRI 780
            SMEL+ +AM L   M K L ++ +     +R  F    +++     P      + +GL+PHSD  GLT+L+Q+NEV GL IKKD  W+P+ P+  AFVVN+GD++EI++NG Y+SIEHRA +N+  ER SIAAF+   Y  ++ P   L+ EN    ++ +             L GKS LD +++
Sbjct:  173 SMELQKVAMCLTGMMAKNLGLESEILTKPLRTVFNREDELL-----PSMSSCGEGLGLSPHSDATGLTLLIQVNEVNGLHIKKDEKWVPIKPILGAFVVNIGDVIEIMSNGIYKSIEHRAVINTDKERLSIAAFHDPEYGTKIGPLPDLVKENGVK-YKTIDYEDYLIRSSNIKLDGKSLLDQMKL 352          
BLAST of CX676549 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSJ (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. japonica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.030e-27
Identity = 60/142 (42.25%), Postives = 87/142 (61.27%), Query Frame = -1
Query:  349 ELKSLAMNLILKMGKVLNIKDQEMRNFFENGMQVMRMNYYPPCPQPEKVVGLTPHSDGCGLTILLQINEVEGLQIKKDRMWIPLTPLPNAFVVNVGDIMEIITNGKYRSIEHRATVNSVHERHSIAAFYYARYDGEVYPASS 774
            E+K L++ ++  +   L ++    R FF +   +MR NYYPPCP+PE+ +G  PH D   LTILLQ ++V GL++  D  W P++P+P A V+N+GD    ++NG+Y+S  HRA VN   ER S+A F   R D  V P  S
Sbjct:  195 EMKELSLTIMELLELSLGVERGYYREFFADSSSIMRCNYYPPCPEPERTLGTGPHCDPTALTILLQ-DDVGGLEVLVDGEWRPVSPVPGAMVINIGDTFMALSNGRYKSCLHRAVVNQRRERRSLAFFLCPREDRVVRPPPS 335          
BLAST of CX676549 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSI (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. indica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.030e-27
Identity = 60/142 (42.25%), Postives = 87/142 (61.27%), Query Frame = -1
Query:  349 ELKSLAMNLILKMGKVLNIKDQEMRNFFENGMQVMRMNYYPPCPQPEKVVGLTPHSDGCGLTILLQINEVEGLQIKKDRMWIPLTPLPNAFVVNVGDIMEIITNGKYRSIEHRATVNSVHERHSIAAFYYARYDGEVYPASS 774
            E+K L++ ++  +   L ++    R FF +   +MR NYYPPCP+PE+ +G  PH D   LTILLQ ++V GL++  D  W P++P+P A V+N+GD    ++NG+Y+S  HRA VN   ER S+A F   R D  V P  S
Sbjct:  195 EMKELSLTIMELLELSLGVERGYYREFFADSSSIMRCNYYPPCPEPERTLGTGPHCDPTALTILLQ-DDVGGLEVLVDGEWRPVSPVPGAMVINIGDTFMALSNGRYKSCLHRAVVNQRRERRSLAFFLCPREDRVVRPPPS 335          
BLAST of CX676549 vs. ExPASy Swiss-Prot
Match: ACCH1_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.528e-26
Identity = 66/185 (35.68%), Postives = 99/185 (53.51%), Query Frame = -1
Query:  235 SMELKSLAMNLILKMGKVLNIKDQEMRNFFENGMQVMRMNYYPPCPQPEKVVGLTPHSDGCGLTILLQINEVEGLQIKKDRMWIPLTPLPNAFVVNVGDIMEIITNGKYRSIEHRATVNSVHERHSIAAFY--YARYDGEVY-PASSLISENTPSLFRRLTVXXXXXXXXXXXLSGKSYLDVLRI 780
            S E+  L   L   + + L +    +++       ++  +YYPPCPQP+  +GLT HSD   LTILLQ + + GLQ+  D+ W+ + P+P A VVNVGD++++ITN K+ S+EHR   N    R S+A F+  Y   +  VY P   ++SE  P  +R  T+             G S L  L+I
Sbjct:  182 SKEVMKLGKLLFELLSEALGLNTNHLKDMDCTNSLLLLGHYYPPCPQPDLTLGLTKHSDNSFLTILLQ-DHIGGLQVLHDQYWVDVPPVPGALVVNVGDLLQLITNDKFISVEHRVLANVAGPRISVACFFSSYLMANPRVYGPIKEILSEENPPNYRDTTITEYAKFYRSKGFDGTSGLLYLKI 365          
BLAST of CX676549 vs. ExPASy Swiss-Prot
Match: GAOX1_ARATH (Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana GN=20ox1 PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.900e-25
Identity = 60/147 (40.82%), Postives = 84/147 (57.14%), Query Frame = -1
Query:  331 LKSLAMNLILKMGKVLNIKDQEMRNFFENGMQVMRMNYYPPCPQPEKVVGLTPHSDGCGLTILLQINEVEGLQIKKDRMWIPLTPLPNAFVVNVGDIMEIITNGKYRSIEHRATVNSVHERHSIAAFYYARYDGEVYPASSLISENT 771
            + SL++ ++  +G  L +K    R FFE    +MR+NYYPPC +P+  +G  PH D   LTIL Q + V GLQ+  +  W  + P P AFVVN+GD    ++N +Y+S  HRA VNS  ER S+A F   + D  V P   L+   T
Sbjct:  194 MSSLSLKIMELLGLSLGVKRDYFREFFEENDSIMRLNYYPPCIKPDLTLGTGPHCDPTSLTILHQ-DHVNGLQVFVENQWRSIRPNPKAFVVNIGDTFMALSNDRYKSCLHRAVVNSESERKSLAFFLCPKKDRVVTPPRELLDSIT 339          
BLAST of CX676549 vs. ExPASy Swiss-Prot
Match: ACCO_PRUMU (1-aminocyclopropane-1-carboxylate oxidase OS=Prunus mume GN=ACO1 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.241e-25
Identity = 59/151 (39.07%), Postives = 94/151 (62.25%), Query Frame = -1
Query:  337 SMELKSLAMNLILKMGKVLNIKDQEMRNFF--ENGMQV-MRMNYYPPCPQPEKVVGLTPHSDGCGLTILLQINEVEGLQIKKDRMWIPLTPLPNAFVVNVGDIMEIITNGKYRSIEHRATVNSVHERHSIAAFYYARYDGEVYPASSLISE 780
            +++L+ LA  L+  + + L ++   ++  F   NG     +++ YPPCP PE + GL  H+D  GL +L Q ++V GLQ+ KD  WI + P+ ++ V+N+GD +E+ITNGKYRS+EHR    +   R SIA+FY    D  +YPA +L+ +
Sbjct:  118 ALKLEKLAEQLLDLLCENLGLEKGYLKKAFYGTNGPTFGTKVSNYPPCPNPELIKGLRAHTDAGGLILLFQDDKVSGLQLLKDGQWIDVPPMRHSIVINLGDQLEVITNGKYRSVEHRVIAQTDGTRMSIASFYNPGSDAVIYPAPTLVEK 268          
BLAST of CX676549 vs. ExPASy Swiss-Prot
Match: GAO1A_WHEAT (Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN=GA20ox1A PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.232e-25
Identity = 60/156 (38.46%), Postives = 87/156 (55.77%), Query Frame = -1
Query:  307 ELKSLAMNLILKMGKVLNIKDQEMRNFFENGMQVMRMNYYPPCPQPEKVVGLTPHSDGCGLTILLQINEVEGLQIKKDRMWIPLTPLPNAFVVNVGDIMEIITNGKYRSIEHRATVNSVHERHSIAAFYYARYDGEVYPASSLISENTPSLFRRLT 774
            E+  L++ ++  +G+ L +     R FFE    +MR+NYYPPC +P + +G  PH D   LTIL Q N V GLQ+  +  W  + P  +AFVVN+GD    ++NG+Y+S  HRA VNS   R S+A F     D  V P  +L+  + P  +   T
Sbjct:  170 EMSRLSLEIMEVLGESLGVGRAHYRRFFEGNDSIMRLNYYPPCQRPLETLGTGPHCDPTSLTILHQDN-VGGLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNSRVPRKSLAFFLCPEMDKVVAPPGTLVDASNPRAYPDFT 324          
BLAST of CX676549 vs. ExPASy Swiss-Prot
Match: GAOX3_ARATH (Gibberellin 20 oxidase 3 OS=Arabidopsis thaliana GN=20ox3 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.528e-25
Identity = 57/144 (39.58%), Postives = 86/144 (59.72%), Query Frame = -1
Query:  340 LKSLAMNLILKMGKVLNIKDQEMRNFFENGMQVMRMNYYPPCPQPEKVVGLTPHSDGCGLTILLQINEVEGLQIKKDRMWIPLTPLPNAFVVNVGDIMEIITNGKYRSIEHRATVNSVHERHSIAAFYYARYDGEVYPASSLIS 771
            + +L++ ++  +G  L ++ +  + FFE+   + R+NYYP C QPE  +G  PH D   LTIL Q ++V GLQ+  D  W  + P P+AFVVN+GD    +TNG+Y+S  HRA VNS  ER + A F   + +  V P   L++
Sbjct:  193 MNTLSLKIMELLGMSLGVERRYFKEFFEDSDSIFRLNYYPQCKQPELALGTGPHCDPTSLTILHQ-DQVGGLQVFVDNKWQSIPPNPHAFVVNIGDTFMALTNGRYKSCLHRAVVNSERERKTFAFFLCPKGEKVVKPPEELVN 335          
BLAST of CX676549 vs. ExPASy Swiss-Prot
Match: GAO1B_WHEAT (Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN=GA20ox1B PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.528e-25
Identity = 60/156 (38.46%), Postives = 86/156 (55.13%), Query Frame = -1
Query:  307 ELKSLAMNLILKMGKVLNIKDQEMRNFFENGMQVMRMNYYPPCPQPEKVVGLTPHSDGCGLTILLQINEVEGLQIKKDRMWIPLTPLPNAFVVNVGDIMEIITNGKYRSIEHRATVNSVHERHSIAAFYYARYDGEVYPASSLISENTPSLFRRLT 774
            E+  L++ ++  +G+ L +     R FFE    +MR+NYYPPC +P + +G  PH D   LTIL Q N V GLQ+  +  W  + P  +AFVVN+GD    ++NG+Y+S  HRA VNS   R S+A F     D  V P  +L+    P  +   T
Sbjct:  170 EMSRLSLEIMEVLGESLGVGRAHYRRFFEGNDSIMRLNYYPPCQRPMETLGTGPHCDPTSLTILHQDN-VGGLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNSKVPRKSLAFFLCPEMDKVVAPPGTLVDAANPRAYPDFT 324          
The following BLAST results are available for this feature:
BLAST of CX676549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
SRG1_ARATH2.381e-5255.43Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 ... [more]
NCS1_COPJA2.832e-2939.25S-norcoclaurine synthase 1 OS=Coptis japonica GN=N... [more]
GAOX2_ORYSJ2.030e-2742.25Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. ja... [more]
GAOX2_ORYSI2.030e-2742.25Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. in... [more]
ACCH1_ARATH8.528e-2635.681-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
GAOX1_ARATH1.900e-2540.82Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana G... [more]
ACCO_PRUMU3.241e-2539.071-aminocyclopropane-1-carboxylate oxidase OS=Prunu... [more]
GAO1A_WHEAT4.232e-2538.46Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN... [more]
GAOX3_ARATH5.528e-2539.58Gibberellin 20 oxidase 3 OS=Arabidopsis thaliana G... [more]
GAO1B_WHEAT5.528e-2538.46Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_70F04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-70F04-K8-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676549 ID=CX676549; Name=CX676549; organism=Citrus sinensis; type=EST; length=780bp
TTTTTTTTTTTTTTTCAATGAAGTGGTTAAATTGCCAAAAAGCATTTGAA
TAACATTGTCAAGTACATGTGTATCACTTGCAATCTCATGATAAGCACAC
AAGAATTCAATTTCAAGAAAGACAGATACTGATCCGGTATAAGCACATAT
CATCATGAGCATGTTGTATTCTCAGTTTCTGTGCCACACTCCTTAATCCA
AAATAAACTTATAATACTAGCCTCGACCGTGTTGAATTCTCAAGACATCC
AGATAAGATTTTCCACTAAGCTCACGAGCGAGCCGGCGCCGGAGGTACTC
TTCAACTGTCAATCTTCTAAACAATGAAGGTGTATTTTCAGAGATCAAAC
TGGATGCTGGGTATACTTCACCATCGTATCTCGCGTAGTAAAATGCGGCA
ATGGAGTGTCTTTCATGTACAGAGTTTACAGTTGCACGATGCTCAATACT
ACGGTATTTTCCATTGGTTATAATCTCCATAATGTCTCCAACGTTGACGA
CGAAGGCATTTGGGAGGGGAGTAAGAGGAATCCACATTCTATCTTTCTTT
ATCTGCAGACCTTCTACTTCATTGATCTGTAGCAGAATGGTAAGACCACA
GCCATCAGAATGAGGCGTAAGACCCACAACCTTCTCCGGCTGAGGGCATG
GAGGGTAATAGTTCATCCTCATTACTTGCATTCCATTTTCAAAGAAGTTT
CTCATTTCTTGATCTTTGATATTTAAAACTTTTCCCATTTTCAATATCAG
ATTCATGGCTAGAGATTTTAACTCCATTGA
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