CX676543

Overview
NameCX676543
Unique NameCX676543
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676543 vs. ExPASy Swiss-Prot
Match: PCS1_ARATH (Glutathione gamma-glutamylcysteinyltransferase 1 OS=Arabidopsis thaliana GN=PCS1 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.293e-24
Identity = 49/64 (76.56%), Postives = 56/64 (87.50%), Query Frame = -3
Query:  637 GYSVQTGTGHFSPIGGYHAGRDMALILDVARFKYPPHWVPLTLLWEAMDRVDDATGQRRGYVFV 828
            G   QTGTGHFSPIGGY+A RDMALILDVARFKYPPHWVPL LLWEAMD +D +TG+RRG++ +
Sbjct:  153 GVFKQTGTGHFSPIGGYNAERDMALILDVARFKYPPHWVPLKLLWEAMDSIDQSTGKRRGFMLI 216          
BLAST of CX676543 vs. ExPASy Swiss-Prot
Match: PCS2_ARATH (Glutathione gamma-glutamylcysteinyltransferase 2 OS=Arabidopsis thaliana GN=PCS2 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.540e-23
Identity = 47/60 (78.33%), Postives = 55/60 (91.67%), Query Frame = -3
Query:  637 QTGTGHFSPIGGYHAGRDMALILDVARFKYPPHWVPLTLLWEAMDRVDDATGQRRGYVFV 816
            QTGTGHFSPIGGY+A RDMALILDVARFKYPPHWVPL LLW+AMD +D +TG+RRG++ +
Sbjct:  156 QTGTGHFSPIGGYNAERDMALILDVARFKYPPHWVPLKLLWDAMDSIDQSTGRRRGFMLI 215          
BLAST of CX676543 vs. ExPASy Swiss-Prot
Match: PCS1_LOTJA (Glutathione gamma-glutamylcysteinyltransferase 1 OS=Lotus japonicus GN=PCS1 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.540e-23
Identity = 46/60 (76.67%), Postives = 55/60 (91.67%), Query Frame = -3
Query:  637 QTGTGHFSPIGGYHAGRDMALILDVARFKYPPHWVPLTLLWEAMDRVDDATGQRRGYVFV 816
            QTGTGHFSPIGGYHAG+DMALILDVARFKYPPHW+PLT LWE M+ VD++TG+ RG++ +
Sbjct:  157 QTGTGHFSPIGGYHAGKDMALILDVARFKYPPHWIPLTHLWEGMNYVDESTGKTRGFMLI 216          
BLAST of CX676543 vs. ExPASy Swiss-Prot
Match: PCS1_WHEAT (Glutathione gamma-glutamylcysteinyltransferase 1 OS=Triticum aestivum GN=PCS1 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.627e-23
Identity = 48/60 (80.00%), Postives = 54/60 (90.00%), Query Frame = -3
Query:  637 QTGTGHFSPIGGYHAGRDMALILDVARFKYPPHWVPLTLLWEAMDRVDDATGQRRGYVFV 816
            QTGTGHFSPIGGYHA +DMALILDVARFKYPPHWVPLTLLW+AM+  D+ATG  RG++ V
Sbjct:  157 QTGTGHFSPIGGYHAEKDMALILDVARFKYPPHWVPLTLLWDAMNTTDEATGLLRGFMLV 216          
BLAST of CX676543 vs. ExPASy Swiss-Prot
Match: PCS3_LOTJA (Glutathione gamma-glutamylcysteinyltransferase 3 OS=Lotus japonicus GN=PCS3 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.904e-22
Identity = 45/60 (75.00%), Postives = 52/60 (86.67%), Query Frame = -3
Query:  637 QTGTGHFSPIGGYHAGRDMALILDVARFKYPPHWVPLTLLWEAMDRVDDATGQRRGYVFV 816
            QTG GHFSPIGGYHA RDM LILDV R+KYPPHWVPLTLLW+AM+ +D ATG +RGY+ +
Sbjct:  157 QTGEGHFSPIGGYHAERDMVLILDVTRYKYPPHWVPLTLLWDAMNTIDRATGLQRGYMII 216          
BLAST of CX676543 vs. ExPASy Swiss-Prot
Match: PCS2_LOTJA (Glutathione gamma-glutamylcysteinyltransferase 2 OS=Lotus japonicus GN=PCS2 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.882e-21
Identity = 43/60 (71.67%), Postives = 51/60 (85.00%), Query Frame = -3
Query:  637 QTGTGHFSPIGGYHAGRDMALILDVARFKYPPHWVPLTLLWEAMDRVDDATGQRRGYVFV 816
            QTG GHFSP+GGYHA RDM LILDV R+KYPPHWVP+TLLW AM+ +D ATG +RGY+ +
Sbjct:  157 QTGEGHFSPLGGYHAERDMVLILDVTRYKYPPHWVPVTLLWNAMNTIDRATGLQRGYMII 216          
BLAST of CX676543 vs. ExPASy Swiss-Prot
Match: PCS_SCHPO (Glutathione gamma-glutamylcysteinyltransferase OS=Schizosaccharomyces pombe GN=SPAC3H1.10 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.469e-14
Identity = 35/60 (58.33%), Postives = 45/60 (75.00%), Query Frame = -3
Query:  637 QTGTGHFSPIGGYHAGRDMALILDVARFKYPPHWVPLTLLWEAMDRVDDATGQRRGYVFV 816
            QTG GHFSP+GG+    +  LILDVARFKYP +WV L L++E+M  +D A+GQ RGYV +
Sbjct:  192 QTGDGHFSPVGGFSESDNKILILDVARFKYPCYWVDLKLMYESMFPIDKASGQPRGYVLL 251          
The following BLAST results are available for this feature:
BLAST of CX676543 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PCS1_ARATH5.293e-2476.56Glutathione gamma-glutamylcysteinyltransferase 1 O... [more]
PCS2_ARATH1.540e-2378.33Glutathione gamma-glutamylcysteinyltransferase 2 O... [more]
PCS1_LOTJA1.540e-2376.67Glutathione gamma-glutamylcysteinyltransferase 1 O... [more]
PCS1_WHEAT2.627e-2380.00Glutathione gamma-glutamylcysteinyltransferase 1 O... [more]
PCS3_LOTJA2.904e-2275.00Glutathione gamma-glutamylcysteinyltransferase 3 O... [more]
PCS2_LOTJA1.882e-2171.67Glutathione gamma-glutamylcysteinyltransferase 2 O... [more]
PCS_SCHPO8.469e-1458.33Glutathione gamma-glutamylcysteinyltransferase OS=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_70E11_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-70E11-I22-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676543 ID=CX676543; Name=CX676543; organism=Citrus sinensis; type=EST; length=839bp
TTCAACACTACTGTTTTTTTGGTTTATAATAACTTTAAGAAATTTGACCC
AAAGAGCAGTACACAAATATAAGTCATGTTCACTGAATCTACACGGTAGA
ATTCCATCAGCAGTTAGTAGATCATTGCCATCAAAATTTTCGCAAAACAA
TGATAGTTCTTGCTACCTAACTTGATATCGATACTTCTTGCCACCTAACT
TGATATCCAGGCCACCAAAGGTAGGCCCCTTACTGATTAAATGAAAAACA
AATTATGGCAGATCCTAGATATTTCCAATTGCTCATCATTTACCTGGTAC
AGGTTTCCAAGGAAACAAATTTCTATTTCTGTGTGCATTGAATGAAAAGG
AACTGTGCTATTCATCATCTTGGTAAGCATGCTGTAGAACAGAGACATAT
GTCTATTGATATTAAAAGTAATGTTGTAAGAAATTTACTTCATGTAAAAA
TACTGCATGTTAGAAACTAATTAGCAATCTGACCATCGATTTAAATATCA
TTATCATTAACTAAACAATAGCAAGCCAAGTTCAGAGAAGTTTCTTCAGG
AGAAGAAACATCCAAAAACTGCTTCCAGCATGTCCAATATCACTGCCAGC
AGGGATAATGTGATATGATAATGAGTAAAAGAAGCATACAAACACGTACC
CCCTACGTTGTCCAGTTGCGTCATCAACTCTATCCATGGCTTCCCAAAGA
AGCGTAAGTGGAACCCAGTGTGGAGGATACTTAAAACGTGCAACATCTAA
AATTAGTGCCATGTCCCTTCCAGCATGATAACCACCAATGGGTGAAAAAT
GCCCTGTTCCAGTCTGCACAGAATATCCCCACAATACAA
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