CX676542

Overview
NameCX676542
Unique NameCX676542
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length905
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676542 vs. ExPASy Swiss-Prot
Match: PCS1_ARATH (Glutathione gamma-glutamylcysteinyltransferase 1 OS=Arabidopsis thaliana GN=PCS1 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 8.016e-29
Identity = 54/64 (84.38%), Postives = 63/64 (98.44%), Query Frame = 2
Query:  713 GPWRWFDESMLDCCEPLEKVKEKGISFGKLVCLAHCAGAKVEAFRTNQSTIDDFRKYIIRCSAS 904
            GPWRWFDESMLDCCEPLE VKEKGISFGK+VCLAHC+GAKVEAFRT+QSTIDDFRK++++C++S
Sbjct:   78 GPWRWFDESMLDCCEPLEVVKEKGISFGKVVCLAHCSGAKVEAFRTSQSTIDDFRKFVVKCTSS 141          

HSP 2 Score: 92.0485 bits (227), Expect = 4.875e-18
Identity = 42/47 (89.36%), Postives = 46/47 (97.87%), Query Frame = 3
Query:    3 IQGGTMEGFYRLISYFQTQSEPAYCGLASLSMVLNALAIDPGRKWKG 143
            +Q GTMEGF+RLISYFQTQSEPAYCGLASLS+VLNAL+IDPGRKWKG
Sbjct:   32 LQKGTMEGFFRLISYFQTQSEPAYCGLASLSVVLNALSIDPGRKWKG 78          
BLAST of CX676542 vs. ExPASy Swiss-Prot
Match: PCS2_ARATH (Glutathione gamma-glutamylcysteinyltransferase 2 OS=Arabidopsis thaliana GN=PCS2 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 5.196e-28
Identity = 54/64 (84.38%), Postives = 61/64 (95.31%), Query Frame = 2
Query:  713 GPWRWFDESMLDCCEPLEKVKEKGISFGKLVCLAHCAGAKVEAFRTNQSTIDDFRKYIIRCSAS 904
            GPWRWFDESML+CCEPLE VK+KGISFGK+VCLAH +GAKVEAFRTNQSTIDDFRKY+++CS S
Sbjct:   77 GPWRWFDESMLECCEPLEIVKDKGISFGKVVCLAHSSGAKVEAFRTNQSTIDDFRKYVVKCSTS 140          

HSP 2 Score: 88.1965 bits (217), Expect = 7.039e-17
Identity = 40/47 (85.11%), Postives = 45/47 (95.74%), Query Frame = 3
Query:    3 IQGGTMEGFYRLISYFQTQSEPAYCGLASLSMVLNALAIDPGRKWKG 143
            +Q GTMEGF+ LISYFQTQSEPA+CGLASLSMVLN+L+IDPGRKWKG
Sbjct:   31 LQKGTMEGFFGLISYFQTQSEPAFCGLASLSMVLNSLSIDPGRKWKG 77          
BLAST of CX676542 vs. ExPASy Swiss-Prot
Match: PCS1_LOTJA (Glutathione gamma-glutamylcysteinyltransferase 1 OS=Lotus japonicus GN=PCS1 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.851e-26
Identity = 50/64 (78.12%), Postives = 58/64 (90.62%), Query Frame = 2
Query:  713 GPWRWFDESMLDCCEPLEKVKEKGISFGKLVCLAHCAGAKVEAFRTNQSTIDDFRKYIIRCSAS 904
            GPWRWFDESMLDCCEPL+K+K +GISFGKLVCLAHCAGAKVEAF  + S+ID FRKY+++CS S
Sbjct:   78 GPWRWFDESMLDCCEPLDKIKARGISFGKLVCLAHCAGAKVEAFHASHSSIDHFRKYVMKCSTS 141          

HSP 2 Score: 93.2041 bits (230), Expect = 2.188e-18
Identity = 42/47 (89.36%), Postives = 45/47 (95.74%), Query Frame = 3
Query:    3 IQGGTMEGFYRLISYFQTQSEPAYCGLASLSMVLNALAIDPGRKWKG 143
            +Q GTME FYRL+SYFQTQSEPA+CGLASLSMVLNALAIDPGRKWKG
Sbjct:   32 VQNGTMESFYRLVSYFQTQSEPAFCGLASLSMVLNALAIDPGRKWKG 78          
BLAST of CX676542 vs. ExPASy Swiss-Prot
Match: PCS1_WHEAT (Glutathione gamma-glutamylcysteinyltransferase 1 OS=Triticum aestivum GN=PCS1 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.552e-24
Identity = 46/64 (71.88%), Postives = 58/64 (90.62%), Query Frame = 2
Query:  713 GPWRWFDESMLDCCEPLEKVKEKGISFGKLVCLAHCAGAKVEAFRTNQSTIDDFRKYIIRCSAS 904
            GPWRWFDESMLDCCEPL KVK +GI+FGK+VCLAHCAGA+V++FR +Q+TI DFR ++ RC++S
Sbjct:   78 GPWRWFDESMLDCCEPLHKVKAEGITFGKVVCLAHCAGARVQSFRADQTTIHDFRAHLTRCASS 141          

HSP 2 Score: 90.5077 bits (223), Expect = 1.418e-17
Identity = 41/47 (87.23%), Postives = 45/47 (95.74%), Query Frame = 3
Query:    3 IQGGTMEGFYRLISYFQTQSEPAYCGLASLSMVLNALAIDPGRKWKG 143
            +QGGTMEGF+ LISYFQTQSEPA+CGLASLS+VLNALAIDPGR WKG
Sbjct:   32 LQGGTMEGFFNLISYFQTQSEPAFCGLASLSVVLNALAIDPGRPWKG 78          
BLAST of CX676542 vs. ExPASy Swiss-Prot
Match: PCS2_LOTJA (Glutathione gamma-glutamylcysteinyltransferase 2 OS=Lotus japonicus GN=PCS2 PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.951e-23
Identity = 46/64 (71.88%), Postives = 55/64 (85.94%), Query Frame = 2
Query:  713 GPWRWFDESMLDCCEPLEKVKEKGISFGKLVCLAHCAGAKVEAFRTNQSTIDDFRKYIIRCSAS 904
            GPWRWFD+SMLDCCEPLEKVK +GI+FGK+ CLA C GAKVEAFR+N+ST+ DFR  +I C +S
Sbjct:   78 GPWRWFDDSMLDCCEPLEKVKVQGITFGKVACLARCNGAKVEAFRSNESTVSDFRNRVISCCSS 141          

HSP 2 Score: 86.2705 bits (212), Expect = 2.675e-16
Identity = 38/44 (86.36%), Postives = 44/44 (100.00%), Query Frame = 3
Query:   12 GTMEGFYRLISYFQTQSEPAYCGLASLSMVLNALAIDPGRKWKG 143
            GTMEGF++LIS++QTQSEPAYCGLA+LS+VLNALAIDPGRKWKG
Sbjct:   35 GTMEGFFKLISFYQTQSEPAYCGLATLSVVLNALAIDPGRKWKG 78          
BLAST of CX676542 vs. ExPASy Swiss-Prot
Match: PCS3_LOTJA (Glutathione gamma-glutamylcysteinyltransferase 3 OS=Lotus japonicus GN=PCS3 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.498e-22
Identity = 44/64 (68.75%), Postives = 54/64 (84.38%), Query Frame = 2
Query:  713 GPWRWFDESMLDCCEPLEKVKEKGISFGKLVCLAHCAGAKVEAFRTNQSTIDDFRKYIIRCSAS 904
            GPWRWFD+SMLDCCEPLEK+K +GI+FGK+ CLA C GA VEAFR+N+ST+ DFR  +I C +S
Sbjct:   78 GPWRWFDDSMLDCCEPLEKIKVQGITFGKVACLARCNGAHVEAFRSNESTVSDFRDRVISCCSS 141          

HSP 2 Score: 85.1149 bits (209), Expect = 5.959e-16
Identity = 36/44 (81.82%), Postives = 44/44 (100.00%), Query Frame = 3
Query:   12 GTMEGFYRLISYFQTQSEPAYCGLASLSMVLNALAIDPGRKWKG 143
            GTMEGF++L+SY+QTQSEPAYCGLA+L++VLNAL+IDPGRKWKG
Sbjct:   35 GTMEGFFKLVSYYQTQSEPAYCGLATLTVVLNALSIDPGRKWKG 78          
The following BLAST results are available for this feature:
BLAST of CX676542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PCS1_ARATH8.016e-2984.38Glutathione gamma-glutamylcysteinyltransferase 1 O... [more]
PCS2_ARATH5.196e-2884.38Glutathione gamma-glutamylcysteinyltransferase 2 O... [more]
PCS1_LOTJA2.851e-2678.13Glutathione gamma-glutamylcysteinyltransferase 1 O... [more]
PCS1_WHEAT4.552e-2471.88Glutathione gamma-glutamylcysteinyltransferase 1 O... [more]
PCS2_LOTJA2.951e-2371.88Glutathione gamma-glutamylcysteinyltransferase 2 O... [more]
PCS3_LOTJA2.498e-2268.75Glutathione gamma-glutamylcysteinyltransferase 3 O... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_70E11_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-70E11-I22-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676542 ID=CX676542; Name=CX676542; organism=Citrus sinensis; type=EST; length=905bp
CCATTCAAGGCGGAACAATGGAAGGTTTCTATAGGCTAATTTCTTATTTT
CAGACACAATCAGAGCCTGCGTATTGTGGATTGGCTAGCCTTTCCATGGT
CTTGAATGCACTTGCCATTGACCCTGGAAGAAAATGGAAGGGTAATCTTT
AAACTCTTTTGCATGCAGTGATGTGGGCGGTTTTCTATGAACTGCAAACT
TAATCTATCTTATATGTTCAGTTTTATGGTCTCTGCCTTGTTAATGTTTT
ACATTGTGCTTGCCCCTAGCCTTCATAGTCCTTGTACCTGGAGTTGCCAG
CAGGCAGGCAAGGGCACGTTTGTGCTTGTTATTTGGTGCTTTAAAAGTTA
TACTAGGCTTAAGAAGCAAAAAAGTTTCATTGATTTCATGGTGTCTCTAT
GATTTTCATGGTTAACTTTTCTTAATCGCTTGTCATATCCATTCTTGTTT
TCATCAAATTTTTTTTTTGGGTTGGATATATAATATCACTTATTTAGCTG
ACTGCTTTGTTGGGGCCTATAGATGTAACAAGGCACGGAAAACACTTTCA
GGAAGTCATTTTTGCTCATATTTTATCGTTATGGTTTTTTTAGTCTGTAT
AGGTCTTTAGTGTGTGTGGAAACTTCTGATCGTTCGTAGTTTGTACATCA
TTTTGGTTATTCTCTGAGGTTGTAGTTAGAAGGATATCAAATATTCATTG
ATGCTCCTTGTAGGACCATGGAGGTGGTTTGATGAATCTATGCTCGACTG
TTGTGAACCCTTGGAAAAGGTTAAAGAGAAAGGTATCTCATTTGGTAAGC
TTGTTTGTTTGGCTCACTGTGCTGGTGCAAAGGTAGAAGCTTTCCGAACA
AATCAAAGTACCATTGATGATTTCCGGAAGTATATAATTCGGTGTTCTGC
CTCTG
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