CX676539
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX676539 vs. ExPASy Swiss-Prot
Match: COP1_ARATH (E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana GN=COP1 PE=1 SV=2) HSP 1 Score: 267.7 bits (683), Expect = 5.173e-71 Identity = 128/157 (81.53%), Postives = 142/157 (90.45%), Query Frame = -3 Query: 293 SYIQQLCGDHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGS-DADHVDDDMGSYFISAVCWKSDSPTMLTANSKGAIKVLVLAA 760 +YI DHHIHYYDLRNISQPLHVF+GHKKAVSYVKFLSNNELASASTDS+LRLWDVK+NLP+ TFRGHTNEKNFVGLTVN+EY+ACGSETNEV+VYHK I++P SHRFGS D D +++ GSYFISAVCWKSDSPTMLTANS+G IKVLVLAA Sbjct: 519 NYIAVGSADHHIHYYDLRNISQPLHVFSGHKKAVSYVKFLSNNELASASTDSTLRLWDVKDNLPVRTFRGHTNEKNFVGLTVNSEYLACGSETNEVYVYHKEITRPVTSHRFGSPDMDDAEEEAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA 675
BLAST of CX676539 vs. ExPASy Swiss-Prot
Match: COP1_PEA (E3 ubiquitin-protein ligase COP1 OS=Pisum sativum GN=COP1 PE=2 SV=1) HSP 1 Score: 254.988 bits (650), Expect = 3.470e-67 Identity = 123/157 (78.34%), Postives = 137/157 (87.26%), Query Frame = -3 Query: 293 SYIQQLCGDHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGS-DADHVDDDMGSYFISAVCWKSDSPTMLTANSKGAIKVLVLAA 760 +YI DHHIHYYDLRNIS+P+HVF GHKKAVSYVKFLSN+ELASASTDS+LRLWDVK+NLP+ TFRGH NEKNFVGLTV +EYIACGSETNEVFVYHK ISKP HRFG+ D + +D+ GSYFISAVCWKSD PT+LTANS+G IKVLVLAA Sbjct: 516 NYIAVGSADHHIHYYDLRNISRPVHVFTGHKKAVSYVKFLSNDELASASTDSTLRLWDVKQNLPVRTFRGHANEKNFVGLTVRSEYIACGSETNEVFVYHKEISKPLTWHRFGTLDMEDAEDEAGSYFISAVCWKSDRPTILTANSQGTIKVLVLAA 672
BLAST of CX676539 vs. ExPASy Swiss-Prot
Match: RFWD2_MOUSE (E3 ubiquitin-protein ligase RFWD2 OS=Mus musculus GN=Rfwd2 PE=1 SV=2) HSP 1 Score: 166.777 bits (421), Expect = 1.363e-41 Identity = 81/157 (51.59%), Postives = 108/157 (68.79%), Query Frame = -3 Query: 299 CGDHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGS-----DADHVDDDMGSYFISAVCWKS----DSPTMLTANSKGAIKVLVL 742 C DH +HYYDLRN QP+ VF GH+KAVSY KF+S E+ SASTDS L+LW+V + L +F+GH NEKNFVGL N +YIACGSE N +++Y+K +SK + +F + D D +DD F+SAVCW++ +S ++ ANS+G IKVL L Sbjct: 577 CADHCVHYYDLRNTKQPIMVFKGHRKAVSYAKFVSGEEIVSASTDSQLKLWNVGKPYCLRSFKGHINEKNFVGLASNGDYIACGSENNSLYLYYKGLSKTLLTFKFDTVKSVLDKDRKEDDTNE-FVSAVCWRALSDGESNVLIAANSQGTIKVLEL 732 HSP 2 Score: 24.6386 bits (52), Expect = 1.363e-41 Identity = 9/18 (50.00%), Postives = 14/18 (77.78%), Query Frame = -1 Query: 736 KANICSVKYNPISSNYVA 789 KAN+C VK++P S ++A Sbjct: 557 KANVCCVKFSPSSRYHLA 574
BLAST of CX676539 vs. ExPASy Swiss-Prot
Match: RFWD2_HUMAN (E3 ubiquitin-protein ligase RFWD2 OS=Homo sapiens GN=RFWD2 PE=1 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 1.363e-41 Identity = 81/157 (51.59%), Postives = 108/157 (68.79%), Query Frame = -3 Query: 299 CGDHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGS-----DADHVDDDMGSYFISAVCWKS----DSPTMLTANSKGAIKVLVL 742 C DH +HYYDLRN QP+ VF GH+KAVSY KF+S E+ SASTDS L+LW+V + L +F+GH NEKNFVGL N +YIACGSE N +++Y+K +SK + +F + D D +DD F+SAVCW++ +S ++ ANS+G IKVL L Sbjct: 575 CADHCVHYYDLRNTKQPIMVFKGHRKAVSYAKFVSGEEIVSASTDSQLKLWNVGKPYCLRSFKGHINEKNFVGLASNGDYIACGSENNSLYLYYKGLSKTLLTFKFDTVKSVLDKDRKEDDTNE-FVSAVCWRALPDGESNVLIAANSQGTIKVLEL 730 HSP 2 Score: 24.6386 bits (52), Expect = 1.363e-41 Identity = 9/18 (50.00%), Postives = 14/18 (77.78%), Query Frame = -1 Query: 736 KANICSVKYNPISSNYVA 789 KAN+C VK++P S ++A Sbjct: 555 KANVCCVKFSPSSRYHLA 572
BLAST of CX676539 vs. ExPASy Swiss-Prot
Match: SPA4_ARATH (Protein SPA1-RELATED 4 OS=Arabidopsis thaliana GN=SPA4 PE=1 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 4.420e-38 Identity = 78/152 (51.32%), Postives = 105/152 (69.08%), Query Frame = -3 Query: 305 DHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDSSLRLWDVKENL------PLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGS--DADHVDDDMGSYFISAVCWKSDSPTMLTANSKGAIKVL 736 DH ++YYDLRN PL GH K VSYV+F+ ++ L S+STD++L+LWD+ ++ PLH+F GHTN KNFVGL+V++ YIA GSETNEVFVYHKA P S++F + ++ D S FIS+VCW+ S T++ ANS G IK+L Sbjct: 640 DHKVYYYDLRNPKLPLCTMIGHHKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSELEVDDASQFISSVCWRGQSSTLVAANSTGNIKIL 791
BLAST of CX676539 vs. ExPASy Swiss-Prot
Match: SPA3_ARATH (Protein SPA1-RELATED 3 OS=Arabidopsis thaliana GN=SPA3 PE=1 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 1.286e-37 Identity = 78/152 (51.32%), Postives = 103/152 (67.76%), Query Frame = -3 Query: 305 DHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDSSLRLWDVKENL------PLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGS--DADHVDDDMGSYFISAVCWKSDSPTMLTANSKGAIKVL 736 DH ++YYDLRN PL GH K VSYVKF+ ++ L S+STD++L+LWD+ + PLH+F GHTN KNFVGL+V++ YIA GSETNEVFVYHKA P S+ F + ++ D S FIS++CW+ S T++ ANS G IK+L Sbjct: 690 DHKVYYYDLRNPKIPLCTMIGHSKTVSYVKFVDSSTLVSSSTDNTLKLWDLSMSASGINESPLHSFTGHTNLKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVMSYMFNNTDSMSGLEVDDASQFISSICWRGQSSTLVAANSNGNIKIL 841
BLAST of CX676539 vs. ExPASy Swiss-Prot
Match: SPA2_ARATH (Protein SPA1-RELATED 2 OS=Arabidopsis thaliana GN=SPA2 PE=1 SV=2) HSP 1 Score: 149.828 bits (377), Expect = 5.777e-36 Identity = 75/158 (47.47%), Postives = 106/158 (67.09%), Query Frame = -3 Query: 299 DHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDSSLRLWDVKE--------NLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGS----DADHVDDDMGSYFISAVCWKSDSPTMLTANSKGAIKVLVL 736 D + YDLRN+ P + +GH KAVSY KFL N L +ASTD++L+LWD+K+ N TF GHTNEKNFVGL+ ++ YIACGSETNEV+ YH+++ P S++FGS +++D + F+S+VCW+ S +++A+S G+IKVL L Sbjct: 879 DFRTYCYDLRNLRTPWCILSGHNKAVSYAKFLDNETLVTASTDNTLKLWDLKKTTHGGLSTNACSLTFGGHTNEKNFVGLSTSDGYIACGSETNEVYAYHRSLPMPITSYKFGSIDPISGKEIEED-NNLFVSSVCWRKRSNMVVSASSNGSIKVLQL 1035 HSP 2 Score: 22.7126 bits (47), Expect = 5.777e-36 Identity = 8/17 (47.06%), Postives = 14/17 (82.35%), Query Frame = -1 Query: 736 ANICSVKYNPISSNYVA 786 AN+C V+++P SS+ +A Sbjct: 858 ANVCCVQFSPQSSHLLA 874
BLAST of CX676539 vs. ExPASy Swiss-Prot
Match: SPA1_ARATH (Protein SUPPRESSOR OF PHYA-105 1 OS=Arabidopsis thaliana GN=SPA1 PE=1 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 3.624e-32 Identity = 71/158 (44.94%), Postives = 103/158 (65.19%), Query Frame = -3 Query: 299 DHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDSSLRLWDVKENLPLH--------TFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGS----DADHVDDDMGSYFISAVCWKSDSPTMLTANSKGAIKVLVL 736 D+ ++ YDLR + P GH+KAVSYVKF+ + + SASTD+SL+LW++ + T++GHTN+KNFVGL+V + YIACGSETNEV+ Y+K++ P S++FGS + DD G F+S+VCW+ S ++ ANS G +K+L L Sbjct: 872 DYKVYCYDLRYVKTPWCTLAGHEKAVSYVKFMDSETIVSASTDNSLKLWNLNKTNSSGLSPGACSLTYKGHTNQKNFVGLSVLDGYIACGSETNEVYSYYKSLPMPMTSYKFGSVDPISGNEYFDDNGQ-FVSSVCWRKKSNMLVAANSTGNMKLLKL 1028 The following BLAST results are available for this feature:
BLAST of CX676539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX676539 ID=CX676539; Name=CX676539; organism=Citrus sinensis; type=EST; length=789bpback to top |