CX676539

Overview
NameCX676539
Unique NameCX676539
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length789
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676539 vs. ExPASy Swiss-Prot
Match: COP1_ARATH (E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana GN=COP1 PE=1 SV=2)

HSP 1 Score: 267.7 bits (683), Expect = 5.173e-71
Identity = 128/157 (81.53%), Postives = 142/157 (90.45%), Query Frame = -3
Query:  293 SYIQQLCGDHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGS-DADHVDDDMGSYFISAVCWKSDSPTMLTANSKGAIKVLVLAA 760
            +YI     DHHIHYYDLRNISQPLHVF+GHKKAVSYVKFLSNNELASASTDS+LRLWDVK+NLP+ TFRGHTNEKNFVGLTVN+EY+ACGSETNEV+VYHK I++P  SHRFGS D D  +++ GSYFISAVCWKSDSPTMLTANS+G IKVLVLAA
Sbjct:  519 NYIAVGSADHHIHYYDLRNISQPLHVFSGHKKAVSYVKFLSNNELASASTDSTLRLWDVKDNLPVRTFRGHTNEKNFVGLTVNSEYLACGSETNEVYVYHKEITRPVTSHRFGSPDMDDAEEEAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA 675          
BLAST of CX676539 vs. ExPASy Swiss-Prot
Match: COP1_PEA (E3 ubiquitin-protein ligase COP1 OS=Pisum sativum GN=COP1 PE=2 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 3.470e-67
Identity = 123/157 (78.34%), Postives = 137/157 (87.26%), Query Frame = -3
Query:  293 SYIQQLCGDHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGS-DADHVDDDMGSYFISAVCWKSDSPTMLTANSKGAIKVLVLAA 760
            +YI     DHHIHYYDLRNIS+P+HVF GHKKAVSYVKFLSN+ELASASTDS+LRLWDVK+NLP+ TFRGH NEKNFVGLTV +EYIACGSETNEVFVYHK ISKP   HRFG+ D +  +D+ GSYFISAVCWKSD PT+LTANS+G IKVLVLAA
Sbjct:  516 NYIAVGSADHHIHYYDLRNISRPVHVFTGHKKAVSYVKFLSNDELASASTDSTLRLWDVKQNLPVRTFRGHANEKNFVGLTVRSEYIACGSETNEVFVYHKEISKPLTWHRFGTLDMEDAEDEAGSYFISAVCWKSDRPTILTANSQGTIKVLVLAA 672          
BLAST of CX676539 vs. ExPASy Swiss-Prot
Match: RFWD2_MOUSE (E3 ubiquitin-protein ligase RFWD2 OS=Mus musculus GN=Rfwd2 PE=1 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 1.363e-41
Identity = 81/157 (51.59%), Postives = 108/157 (68.79%), Query Frame = -3
Query:  299 CGDHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGS-----DADHVDDDMGSYFISAVCWKS----DSPTMLTANSKGAIKVLVL 742
            C DH +HYYDLRN  QP+ VF GH+KAVSY KF+S  E+ SASTDS L+LW+V +   L +F+GH NEKNFVGL  N +YIACGSE N +++Y+K +SK   + +F +     D D  +DD    F+SAVCW++    +S  ++ ANS+G IKVL L
Sbjct:  577 CADHCVHYYDLRNTKQPIMVFKGHRKAVSYAKFVSGEEIVSASTDSQLKLWNVGKPYCLRSFKGHINEKNFVGLASNGDYIACGSENNSLYLYYKGLSKTLLTFKFDTVKSVLDKDRKEDDTNE-FVSAVCWRALSDGESNVLIAANSQGTIKVLEL 732          

HSP 2 Score: 24.6386 bits (52), Expect = 1.363e-41
Identity = 9/18 (50.00%), Postives = 14/18 (77.78%), Query Frame = -1
Query:  736 KANICSVKYNPISSNYVA 789
            KAN+C VK++P S  ++A
Sbjct:  557 KANVCCVKFSPSSRYHLA 574          
BLAST of CX676539 vs. ExPASy Swiss-Prot
Match: RFWD2_HUMAN (E3 ubiquitin-protein ligase RFWD2 OS=Homo sapiens GN=RFWD2 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.363e-41
Identity = 81/157 (51.59%), Postives = 108/157 (68.79%), Query Frame = -3
Query:  299 CGDHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGS-----DADHVDDDMGSYFISAVCWKS----DSPTMLTANSKGAIKVLVL 742
            C DH +HYYDLRN  QP+ VF GH+KAVSY KF+S  E+ SASTDS L+LW+V +   L +F+GH NEKNFVGL  N +YIACGSE N +++Y+K +SK   + +F +     D D  +DD    F+SAVCW++    +S  ++ ANS+G IKVL L
Sbjct:  575 CADHCVHYYDLRNTKQPIMVFKGHRKAVSYAKFVSGEEIVSASTDSQLKLWNVGKPYCLRSFKGHINEKNFVGLASNGDYIACGSENNSLYLYYKGLSKTLLTFKFDTVKSVLDKDRKEDDTNE-FVSAVCWRALPDGESNVLIAANSQGTIKVLEL 730          

HSP 2 Score: 24.6386 bits (52), Expect = 1.363e-41
Identity = 9/18 (50.00%), Postives = 14/18 (77.78%), Query Frame = -1
Query:  736 KANICSVKYNPISSNYVA 789
            KAN+C VK++P S  ++A
Sbjct:  555 KANVCCVKFSPSSRYHLA 572          
BLAST of CX676539 vs. ExPASy Swiss-Prot
Match: SPA4_ARATH (Protein SPA1-RELATED 4 OS=Arabidopsis thaliana GN=SPA4 PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.420e-38
Identity = 78/152 (51.32%), Postives = 105/152 (69.08%), Query Frame = -3
Query:  305 DHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDSSLRLWDVKENL------PLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGS--DADHVDDDMGSYFISAVCWKSDSPTMLTANSKGAIKVL 736
            DH ++YYDLRN   PL    GH K VSYV+F+ ++ L S+STD++L+LWD+  ++      PLH+F GHTN KNFVGL+V++ YIA GSETNEVFVYHKA   P  S++F +      ++ D  S FIS+VCW+  S T++ ANS G IK+L
Sbjct:  640 DHKVYYYDLRNPKLPLCTMIGHHKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSELEVDDASQFISSVCWRGQSSTLVAANSTGNIKIL 791          
BLAST of CX676539 vs. ExPASy Swiss-Prot
Match: SPA3_ARATH (Protein SPA1-RELATED 3 OS=Arabidopsis thaliana GN=SPA3 PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.286e-37
Identity = 78/152 (51.32%), Postives = 103/152 (67.76%), Query Frame = -3
Query:  305 DHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDSSLRLWDVKENL------PLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGS--DADHVDDDMGSYFISAVCWKSDSPTMLTANSKGAIKVL 736
            DH ++YYDLRN   PL    GH K VSYVKF+ ++ L S+STD++L+LWD+  +       PLH+F GHTN KNFVGL+V++ YIA GSETNEVFVYHKA   P  S+ F +      ++ D  S FIS++CW+  S T++ ANS G IK+L
Sbjct:  690 DHKVYYYDLRNPKIPLCTMIGHSKTVSYVKFVDSSTLVSSSTDNTLKLWDLSMSASGINESPLHSFTGHTNLKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVMSYMFNNTDSMSGLEVDDASQFISSICWRGQSSTLVAANSNGNIKIL 841          
BLAST of CX676539 vs. ExPASy Swiss-Prot
Match: SPA2_ARATH (Protein SPA1-RELATED 2 OS=Arabidopsis thaliana GN=SPA2 PE=1 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 5.777e-36
Identity = 75/158 (47.47%), Postives = 106/158 (67.09%), Query Frame = -3
Query:  299 DHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDSSLRLWDVKE--------NLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGS----DADHVDDDMGSYFISAVCWKSDSPTMLTANSKGAIKVLVL 736
            D   + YDLRN+  P  + +GH KAVSY KFL N  L +ASTD++L+LWD+K+        N    TF GHTNEKNFVGL+ ++ YIACGSETNEV+ YH+++  P  S++FGS        +++D  + F+S+VCW+  S  +++A+S G+IKVL L
Sbjct:  879 DFRTYCYDLRNLRTPWCILSGHNKAVSYAKFLDNETLVTASTDNTLKLWDLKKTTHGGLSTNACSLTFGGHTNEKNFVGLSTSDGYIACGSETNEVYAYHRSLPMPITSYKFGSIDPISGKEIEED-NNLFVSSVCWRKRSNMVVSASSNGSIKVLQL 1035          

HSP 2 Score: 22.7126 bits (47), Expect = 5.777e-36
Identity = 8/17 (47.06%), Postives = 14/17 (82.35%), Query Frame = -1
Query:  736 ANICSVKYNPISSNYVA 786
            AN+C V+++P SS+ +A
Sbjct:  858 ANVCCVQFSPQSSHLLA 874          
BLAST of CX676539 vs. ExPASy Swiss-Prot
Match: SPA1_ARATH (Protein SUPPRESSOR OF PHYA-105 1 OS=Arabidopsis thaliana GN=SPA1 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.624e-32
Identity = 71/158 (44.94%), Postives = 103/158 (65.19%), Query Frame = -3
Query:  299 DHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDSSLRLWDVKENLPLH--------TFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGS----DADHVDDDMGSYFISAVCWKSDSPTMLTANSKGAIKVLVL 736
            D+ ++ YDLR +  P     GH+KAVSYVKF+ +  + SASTD+SL+LW++ +             T++GHTN+KNFVGL+V + YIACGSETNEV+ Y+K++  P  S++FGS      +   DD G  F+S+VCW+  S  ++ ANS G +K+L L
Sbjct:  872 DYKVYCYDLRYVKTPWCTLAGHEKAVSYVKFMDSETIVSASTDNSLKLWNLNKTNSSGLSPGACSLTYKGHTNQKNFVGLSVLDGYIACGSETNEVYSYYKSLPMPMTSYKFGSVDPISGNEYFDDNGQ-FVSSVCWRKKSNMLVAANSTGNMKLLKL 1028          
The following BLAST results are available for this feature:
BLAST of CX676539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
COP1_ARATH5.173e-7181.53E3 ubiquitin-protein ligase COP1 OS=Arabidopsis th... [more]
COP1_PEA3.470e-6778.34E3 ubiquitin-protein ligase COP1 OS=Pisum sativum ... [more]
RFWD2_MOUSE1.363e-4151.59E3 ubiquitin-protein ligase RFWD2 OS=Mus musculus ... [more]
RFWD2_HUMAN1.363e-4151.59E3 ubiquitin-protein ligase RFWD2 OS=Homo sapiens ... [more]
SPA4_ARATH4.420e-3851.32Protein SPA1-RELATED 4 OS=Arabidopsis thaliana GN=... [more]
SPA3_ARATH1.286e-3751.32Protein SPA1-RELATED 3 OS=Arabidopsis thaliana GN=... [more]
SPA2_ARATH5.777e-3647.47Protein SPA1-RELATED 2 OS=Arabidopsis thaliana GN=... [more]
SPA1_ARATH3.624e-3244.94Protein SUPPRESSOR OF PHYA-105 1 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_70E09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-70E09-I18-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676539 ID=CX676539; Name=CX676539; organism=Citrus sinensis; type=EST; length=789bp
GTCAAAATAAAGGATTCTTCATTTGAAACTATATATATACTGAGTGAAAG
CTTCATAGCTCTATAGGTTGGCTCAATTAGAAATATACTGAGTTGATAGT
TGATACATGATGGCTAGTATAAGCAAACGTTATTAACAGTGCAGAGGGAT
GAGTATAAAGACTTCCCTAATCTACCTATTTGACATTTGATGGCATATAC
AGATTATTAATTACCAAAGTATGGATAAACAATGTTGTAGTTCAGACATC
CATCAAGAACTTGATTTTGATTGCTTTTGATTTTACCATTTAGGCTGCAA
GAACAAGAACTTTAATCGCTCCTTTACTGTTTGCTGTTAACATTGTTGGG
CTATCACTCTTCCAGCACACAGCACTGATGAAATATGATCCCATATCATC
GTCAACATGATCCGCATCAGAACCAAATCTATGTGAAGCTGCAGGTTTGG
AGATTGCCTTGTGATACACAAACACTTCATTTGTTTCACTGCCACAGGCT
ATGTATTCATTGTTTACTGTAAGACCCACAAAATTCTTCTCATTTGTATG
GCCTCTAAAAGTGTGCAGTGGGAGATTTTCCTTTACATCCCACAAGCGCA
ATGAGCTGTCAGTAGATGCAGAAGCCAGTTCATTGTTGGACAAAAATTTT
ACATATGAGACAGCTTTCTTGTGCCCATTGAACACATGGAGTGGTTGGCT
GATATTTCTCAGGTCGTAGTAGTGAATGTGATGATCGCCACATAATTGCT
GGATATAGGATTATATTTGACAGAACAAATATTTGCCTT
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