CX676538
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX676538 vs. ExPASy Swiss-Prot
Match: COP1_ARATH (E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana GN=COP1 PE=1 SV=2) HSP 1 Score: 267.7 bits (683), Expect = 1.246e-81 Identity = 128/157 (81.53%), Postives = 142/157 (90.45%), Query Frame = 1 Query: 79 SYIQQLCGDHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGS-DADHVDDDMGSYFISAVCWKSDSPTMLTANSKGAIKVLVLAA 546 +YI DHHIHYYDLRNISQPLHVF+GHKKAVSYVKFLSNNELASASTDS+LRLWDVK+NLP+ TFRGHTNEKNFVGLTVN+EY+ACGSETNEV+VYHK I++P SHRFGS D D +++ GSYFISAVCWKSDSPTMLTANS+G IKVLVLAA Sbjct: 519 NYIAVGSADHHIHYYDLRNISQPLHVFSGHKKAVSYVKFLSNNELASASTDSTLRLWDVKDNLPVRTFRGHTNEKNFVGLTVNSEYLACGSETNEVYVYHKEITRPVTSHRFGSPDMDDAEEEAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA 675 HSP 2 Score: 57.3806 bits (137), Expect = 1.246e-81 Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 2 Query: 2 KI*CTNQEACALNIDMKANICSVKYNPISSNYVAI 106 K+ CT QEA +NIDMKANIC VKYNP SSNY+A+ Sbjct: 489 KVWCTRQEASVINIDMKANICCVKYNPGSSNYIAV 523
BLAST of CX676538 vs. ExPASy Swiss-Prot
Match: COP1_PEA (E3 ubiquitin-protein ligase COP1 OS=Pisum sativum GN=COP1 PE=2 SV=1) HSP 1 Score: 254.988 bits (650), Expect = 2.765e-78 Identity = 123/157 (78.34%), Postives = 137/157 (87.26%), Query Frame = 1 Query: 79 SYIQQLCGDHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGS-DADHVDDDMGSYFISAVCWKSDSPTMLTANSKGAIKVLVLAA 546 +YI DHHIHYYDLRNIS+P+HVF GHKKAVSYVKFLSN+ELASASTDS+LRLWDVK+NLP+ TFRGH NEKNFVGLTV +EYIACGSETNEVFVYHK ISKP HRFG+ D + +D+ GSYFISAVCWKSD PT+LTANS+G IKVLVLAA Sbjct: 516 NYIAVGSADHHIHYYDLRNISRPVHVFTGHKKAVSYVKFLSNDELASASTDSTLRLWDVKQNLPVRTFRGHANEKNFVGLTVRSEYIACGSETNEVFVYHKEISKPLTWHRFGTLDMEDAEDEAGSYFISAVCWKSDRPTILTANSQGTIKVLVLAA 672 HSP 2 Score: 58.9214 bits (141), Expect = 2.765e-78 Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 2 Query: 2 KI*CTNQEACALNIDMKANICSVKYNPISSNYVAI 106 K+ CTNQEA LNIDMKANIC VKYNP S NY+A+ Sbjct: 486 KVWCTNQEASVLNIDMKANICCVKYNPGSGNYIAV 520
BLAST of CX676538 vs. ExPASy Swiss-Prot
Match: RFWD2_MOUSE (E3 ubiquitin-protein ligase RFWD2 OS=Mus musculus GN=Rfwd2 PE=1 SV=2) HSP 1 Score: 166.777 bits (421), Expect = 2.236e-43 Identity = 81/157 (51.59%), Postives = 108/157 (68.79%), Query Frame = 1 Query: 97 CGDHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGS-----DADHVDDDMGSYFISAVCWKS----DSPTMLTANSKGAIKVLVL 540 C DH +HYYDLRN QP+ VF GH+KAVSY KF+S E+ SASTDS L+LW+V + L +F+GH NEKNFVGL N +YIACGSE N +++Y+K +SK + +F + D D +DD F+SAVCW++ +S ++ ANS+G IKVL L Sbjct: 577 CADHCVHYYDLRNTKQPIMVFKGHRKAVSYAKFVSGEEIVSASTDSQLKLWNVGKPYCLRSFKGHINEKNFVGLASNGDYIACGSENNSLYLYYKGLSKTLLTFKFDTVKSVLDKDRKEDDTNE-FVSAVCWRALSDGESNVLIAANSQGTIKVLEL 732 HSP 2 Score: 30.4166 bits (67), Expect = 2.236e-43 Identity = 13/34 (38.24%), Postives = 22/34 (64.71%), Query Frame = 2 Query: 2 KI*CTNQEACALNIDMKANICSVKYNPISSNYVA 103 K+ TN + +I+ KAN+C VK++P S ++A Sbjct: 541 KLWSTNLDNSVASIEAKANVCCVKFSPSSRYHLA 574
BLAST of CX676538 vs. ExPASy Swiss-Prot
Match: RFWD2_HUMAN (E3 ubiquitin-protein ligase RFWD2 OS=Homo sapiens GN=RFWD2 PE=1 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 2.236e-43 Identity = 81/157 (51.59%), Postives = 108/157 (68.79%), Query Frame = 1 Query: 97 CGDHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDSSLRLWDVKENLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGS-----DADHVDDDMGSYFISAVCWKS----DSPTMLTANSKGAIKVLVL 540 C DH +HYYDLRN QP+ VF GH+KAVSY KF+S E+ SASTDS L+LW+V + L +F+GH NEKNFVGL N +YIACGSE N +++Y+K +SK + +F + D D +DD F+SAVCW++ +S ++ ANS+G IKVL L Sbjct: 575 CADHCVHYYDLRNTKQPIMVFKGHRKAVSYAKFVSGEEIVSASTDSQLKLWNVGKPYCLRSFKGHINEKNFVGLASNGDYIACGSENNSLYLYYKGLSKTLLTFKFDTVKSVLDKDRKEDDTNE-FVSAVCWRALPDGESNVLIAANSQGTIKVLEL 730 HSP 2 Score: 30.4166 bits (67), Expect = 2.236e-43 Identity = 13/34 (38.24%), Postives = 22/34 (64.71%), Query Frame = 2 Query: 2 KI*CTNQEACALNIDMKANICSVKYNPISSNYVA 103 K+ TN + +I+ KAN+C VK++P S ++A Sbjct: 539 KLWSTNLDNSVASIEAKANVCCVKFSPSSRYHLA 572
BLAST of CX676538 vs. ExPASy Swiss-Prot
Match: SPA4_ARATH (Protein SPA1-RELATED 4 OS=Arabidopsis thaliana GN=SPA4 PE=1 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 4.931e-38 Identity = 78/152 (51.32%), Postives = 105/152 (69.08%), Query Frame = 1 Query: 103 DHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDSSLRLWDVKENL------PLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGS--DADHVDDDMGSYFISAVCWKSDSPTMLTANSKGAIKVL 534 DH ++YYDLRN PL GH K VSYV+F+ ++ L S+STD++L+LWD+ ++ PLH+F GHTN KNFVGL+V++ YIA GSETNEVFVYHKA P S++F + ++ D S FIS+VCW+ S T++ ANS G IK+L Sbjct: 640 DHKVYYYDLRNPKLPLCTMIGHHKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSELEVDDASQFISSVCWRGQSSTLVAANSTGNIKIL 791
BLAST of CX676538 vs. ExPASy Swiss-Prot
Match: SPA3_ARATH (Protein SPA1-RELATED 3 OS=Arabidopsis thaliana GN=SPA3 PE=1 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 1.435e-37 Identity = 78/152 (51.32%), Postives = 103/152 (67.76%), Query Frame = 1 Query: 103 DHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDSSLRLWDVKENL------PLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGS--DADHVDDDMGSYFISAVCWKSDSPTMLTANSKGAIKVL 534 DH ++YYDLRN PL GH K VSYVKF+ ++ L S+STD++L+LWD+ + PLH+F GHTN KNFVGL+V++ YIA GSETNEVFVYHKA P S+ F + ++ D S FIS++CW+ S T++ ANS G IK+L Sbjct: 690 DHKVYYYDLRNPKIPLCTMIGHSKTVSYVKFVDSSTLVSSSTDNTLKLWDLSMSASGINESPLHSFTGHTNLKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVMSYMFNNTDSMSGLEVDDASQFISSICWRGQSSTLVAANSNGNIKIL 841
BLAST of CX676538 vs. ExPASy Swiss-Prot
Match: SPA2_ARATH (Protein SPA1-RELATED 2 OS=Arabidopsis thaliana GN=SPA2 PE=1 SV=2) HSP 1 Score: 149.828 bits (377), Expect = 7.896e-37 Identity = 75/158 (47.47%), Postives = 106/158 (67.09%), Query Frame = 1 Query: 103 DHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDSSLRLWDVKE--------NLPLHTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGS----DADHVDDDMGSYFISAVCWKSDSPTMLTANSKGAIKVLVL 540 D + YDLRN+ P + +GH KAVSY KFL N L +ASTD++L+LWD+K+ N TF GHTNEKNFVGL+ ++ YIACGSETNEV+ YH+++ P S++FGS +++D + F+S+VCW+ S +++A+S G+IKVL L Sbjct: 879 DFRTYCYDLRNLRTPWCILSGHNKAVSYAKFLDNETLVTASTDNTLKLWDLKKTTHGGLSTNACSLTFGGHTNEKNFVGLSTSDGYIACGSETNEVYAYHRSLPMPITSYKFGSIDPISGKEIEED-NNLFVSSVCWRKRSNMVVSASSNGSIKVLQL 1035 HSP 2 Score: 25.409 bits (54), Expect = 7.896e-37 Identity = 11/29 (37.93%), Postives = 18/29 (62.07%), Query Frame = 2 Query: 17 NQEACALNIDMKANICSVKYNPISSNYVA 103 N+ C I AN+C V+++P SS+ +A Sbjct: 846 NERNCLGTIRNIANVCCVQFSPQSSHLLA 874
BLAST of CX676538 vs. ExPASy Swiss-Prot
Match: SPA1_ARATH (Protein SUPPRESSOR OF PHYA-105 1 OS=Arabidopsis thaliana GN=SPA1 PE=1 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 4.043e-32 Identity = 71/158 (44.94%), Postives = 103/158 (65.19%), Query Frame = 1 Query: 103 DHHIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDSSLRLWDVKENLPLH--------TFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAASHRFGS----DADHVDDDMGSYFISAVCWKSDSPTMLTANSKGAIKVLVL 540 D+ ++ YDLR + P GH+KAVSYVKF+ + + SASTD+SL+LW++ + T++GHTN+KNFVGL+V + YIACGSETNEV+ Y+K++ P S++FGS + DD G F+S+VCW+ S ++ ANS G +K+L L Sbjct: 872 DYKVYCYDLRYVKTPWCTLAGHEKAVSYVKFMDSETIVSASTDNSLKLWNLNKTNSSGLSPGACSLTYKGHTNQKNFVGLSVLDGYIACGSETNEVYSYYKSLPMPMTSYKFGSVDPISGNEYFDDNGQ-FVSSVCWRKKSNMLVAANSTGNMKLLKL 1028 The following BLAST results are available for this feature:
BLAST of CX676538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX676538 ID=CX676538; Name=CX676538; organism=Citrus sinensis; type=EST; length=837bpback to top |