FC921887
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC921887 vs. ExPASy Swiss-Prot
Match: AB40G_ARATH (ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 9.397e-30 Identity = 53/79 (67.09%), Postives = 62/79 (78.48%), Query Frame = -3 Query: 1 SLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFG 237 +LGG +LSR+DIKKWW W YW SP+ Y QNAI+ANEF GHSW + ++SSETLGV LKSRGF H YWYW+G GAL G Sbjct: 682 ALGGVVLSRDDIKKWWIWGYWISPIMYGQNAILANEFFGHSWSRAVENSSETLGVTFLKSRGFLPHAYWYWIGTGALLG 760
BLAST of FC921887 vs. ExPASy Swiss-Prot
Match: PDR4_ORYSJ (Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 1.149e-27 Identity = 52/79 (65.82%), Postives = 59/79 (74.68%), Query Frame = -3 Query: 1 SLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFG 237 +LGGFIL+R D+KKWW W YW SPL+YAQNAI NEFLGHSW + + TLGV VLKSRG F WYW+GLGAL G Sbjct: 685 ALGGFILARPDVKKWWIWGYWISPLSYAQNAISTNEFLGHSWSQILPGENVTLGVSVLKSRGIFTEAKWYWIGLGALLG 763
BLAST of FC921887 vs. ExPASy Swiss-Prot
Match: PDR7_ORYSJ (Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 1.959e-27 Identity = 54/82 (65.85%), Postives = 61/82 (74.39%), Query Frame = -3 Query: 1 LSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQ--DSSETLGVQVLKSRGFFAHEYWYWLGLGALFG 240 L LGGF++SRE+IKKWW W YW SPL YAQNAI NEFLGHSW K S++TLGVQVLK RG F WYW+G+GAL G Sbjct: 680 LVLGGFLISRENIKKWWIWGYWSSPLMYAQNAIAVNEFLGHSWNKVVDPTQSNDTLGVQVLKVRGIFVDANWYWIGVGALLG 761
BLAST of FC921887 vs. ExPASy Swiss-Prot
Match: PDR3_ORYSJ (Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 2.166e-26 Identity = 51/80 (63.75%), Postives = 58/80 (72.50%), Query Frame = -3 Query: 1 LGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQD--SSETLGVQVLKSRGFFAHEYWYWLGLGALFG 234 LGGFIL+RE +KKWW W YW SP+ YAQNAI NE +GHSW K S+ETLGVQVLKSRG F WYW+G GA+ G Sbjct: 693 LGGFILAREQVKKWWIWGYWISPMMYAQNAISVNELMGHSWNKIVNSSASNETLGVQVLKSRGVFPEARWYWIGFGAMIG 772
BLAST of FC921887 vs. ExPASy Swiss-Prot
Match: PDR3_ORYSI (Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 2.166e-26 Identity = 51/80 (63.75%), Postives = 58/80 (72.50%), Query Frame = -3 Query: 1 LGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQD--SSETLGVQVLKSRGFFAHEYWYWLGLGALFG 234 LGGFIL+RE +KKWW W YW SP+ YAQNAI NE +GHSW K S+ETLGVQVLKSRG F WYW+G GA+ G Sbjct: 693 LGGFILAREQVKKWWIWGYWISPMMYAQNAISVNELMGHSWNKIVNSSASNETLGVQVLKSRGVFPEARWYWIGFGAMIG 772
BLAST of FC921887 vs. ExPASy Swiss-Prot
Match: PDR2_ORYSJ (Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 4.826e-26 Identity = 52/80 (65.00%), Postives = 58/80 (72.50%), Query Frame = -3 Query: 1 LGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQD--SSETLGVQVLKSRGFFAHEYWYWLGLGALFG 234 LGGFIL RE +KKWW W YW SP+ YAQNAI NEFLGHSW K + S+ETLGVQ L+SRG F WYW+G GAL G Sbjct: 702 LGGFILVREKVKKWWIWGYWISPMMYAQNAISVNEFLGHSWDKVLNNSLSNETLGVQALRSRGVFPEAKWYWIGFGALLG 781
BLAST of FC921887 vs. ExPASy Swiss-Prot
Match: TUR2_SPIPO (Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrrhiza GN=TUR2 PE=1 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 2.395e-25 Identity = 48/80 (60.00%), Postives = 59/80 (73.75%), Query Frame = -3 Query: 1 LSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFG 240 L LGGFI++RE IKK+W W YW SPL YAQNAI NEFLGHSW K + +TLG + L++RG F + WYW+G+GAL G Sbjct: 684 LVLGGFIIAREKIKKFWIWGYWSSPLMYAQNAIAVNEFLGHSWNKLVDATGQTLGERFLRNRGIFVDKNWYWIGVGALIG 763
BLAST of FC921887 vs. ExPASy Swiss-Prot
Match: PDR1_ORYSJ (Probable pleiotropic drug resistance protein 1 OS=Oryza sativa subsp. japonica GN=PDR1 PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 4.086e-25 Identity = 49/80 (61.25%), Postives = 57/80 (71.25%), Query Frame = -3 Query: 1 LGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQD--SSETLGVQVLKSRGFFAHEYWYWLGLGALFG 234 LGGFIL+R+ + KWW W YW SP+ YAQNA+ NEFLGHSW K + S+ETLGVQ L SRG F WYW+G GAL G Sbjct: 706 LGGFILARDKVNKWWIWGYWISPMMYAQNAVSVNEFLGHSWDKVLNNSLSNETLGVQALMSRGIFPEAKWYWIGFGALLG 785
BLAST of FC921887 vs. ExPASy Swiss-Prot
Match: PDR1_TOBAC (Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 2.648e-24 Identity = 44/79 (55.70%), Postives = 56/79 (70.89%), Query Frame = -3 Query: 1 SLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFG 237 +LGGF+LSR+D+K WW W YW SP+ Y+ N+I+ NEF G W +ETLG V+KSRGFF YWYW+G+GAL G Sbjct: 689 ALGGFVLSRDDVKSWWIWGYWISPMMYSVNSILVNEFDGKKWNHIVPGGNETLGSTVVKSRGFFPEAYWYWIGVGALVG 767
BLAST of FC921887 vs. ExPASy Swiss-Prot
Match: PDR1_NICPL (Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 1.314e-23 Identity = 44/79 (55.70%), Postives = 55/79 (69.62%), Query Frame = -3 Query: 1 SLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFG 237 +LGGFIL+R D+K WW W YW SPL Y+ NAI+ NEF G WK +E LG V+++RGFF YWYW+G+GAL G Sbjct: 693 ALGGFILARNDVKDWWIWGYWTSPLMYSVNAILVNEFDGQKWKHIVAGGTEPLGAAVVRARGFFPDAYWYWIGVGALAG 771 The following BLAST results are available for this feature:
BLAST of FC921887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 30
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Sequences
The
following sequences are available for this feature:
EST sequence >FC921887 ID=FC921887; Name=FC921887; organism=Citrus sinensis; type=EST; length=242bpback to top |