CX676537

Overview
NameCX676537
Unique NameCX676537
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length744
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676537 vs. ExPASy Swiss-Prot
Match: U2A2B_NICPL (Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia GN=U2AF65B PE=2 SV=1)

HSP 1 Score: 404.06 bits (1037), Expect = 4.233e-112
Identity = 193/225 (85.78%), Postives = 213/225 (94.67%), Query Frame = 1
Query:    1 PGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDYEG 675
            PGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQD+SVTDIACAALNGIKMGDKTLTVRRANQG  QPKPEQESVLLHAQQQIALQRLMLQP ++ +KV+ LT+V+SADEL DDE+Y++ILEDMR E GKFG+LVNV+IPRP+PNGEP+PGVGKVFLEYAD+D ++KAR  +NGRKFGGNQVVAVFYPENKF +GDY+G
Sbjct:  349 PGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDVSVTDIACAALNGIKMGDKTLTVRRANQGTTQPKPEQESVLLHAQQQIALQRLMLQPATLATKVLSLTEVISADELNDDEDYQDILEDMRTECGKFGSLVNVVIPRPSPNGEPTPGVGKVFLEYADVDSSSKARQSLNGRKFGGNQVVAVFYPENKFYEGDYDG 573          
BLAST of CX676537 vs. ExPASy Swiss-Prot
Match: U2A2B_ARATH (Splicing factor U2af large subunit B OS=Arabidopsis thaliana GN=U2AF65B PE=2 SV=2)

HSP 1 Score: 401.749 bits (1031), Expect = 2.101e-111
Identity = 192/223 (86.10%), Postives = 211/223 (94.62%), Query Frame = 1
Query:    4 GSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDYE 672
            GS GGLEGPDRIFVGGLPYYFTE QIRELLESFGPLRGF+LVKDRETGNSKGYAFCVYQD SVTDIACAALNGIKMGDKTLTVRRA QGA QPKPEQE VLL+AQQQIALQRLM QPG  P+K+VCLTQVV+AD+L+DDEEY EI+EDMRQEGGKFG LVNV+IPRPNP+ +P+PGVGKVFLEYAD+DG++KAR+GMNGRKFGGNQVVAV+YPE+K+AQGDYE
Sbjct:  366 GSTGGLEGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAALNGIKMGDKTLTVRRAIQGAIQPKPEQEEVLLYAQQQIALQRLMFQPGGTPTKIVCLTQVVTADDLRDDEEYAEIMEDMRQEGGKFGNLVNVVIPRPNPDHDPTPGVGKVFLEYADVDGSSKARSGMNGRKFGGNQVVAVYYPEDKYAQGDYE 588          
BLAST of CX676537 vs. ExPASy Swiss-Prot
Match: U2A2A_NICPL (Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia GN=U2AF65A PE=2 SV=1)

HSP 1 Score: 397.127 bits (1019), Expect = 5.175e-110
Identity = 188/224 (83.93%), Postives = 210/224 (93.75%), Query Frame = 1
Query:    1 PGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDYE 672
            PGS+GGLEGPDRIFVGGLPYYFTE+QIRELLESFG LRGFDLVKDRETGNSKGYAFCVYQD+SVTDIACAALNGIKMGDKTLTVRRANQG  QP PEQESVLLHAQQQIALQR MLQPG++ +KV+CLT+VV+ DEL DD++Y++ILEDMR E  KFG LVNV+IPRPNPNG P+PG+GKVFLEYAD+DG++KAR G+NGRKFGGNQVVAVFYPENKF++GDYE
Sbjct:  331 PGSSGGLEGPDRIFVGGLPYYFTESQIRELLESFGQLRGFDLVKDRETGNSKGYAFCVYQDVSVTDIACAALNGIKMGDKTLTVRRANQGTTQPNPEQESVLLHAQQQIALQRFMLQPGALATKVLCLTEVVTVDELNDDDDYQDILEDMRTECEKFGALVNVVIPRPNPNGVPTPGLGKVFLEYADVDGSSKARQGLNGRKFGGNQVVAVFYPENKFSEGDYE 554          
BLAST of CX676537 vs. ExPASy Swiss-Prot
Match: U2A2B_WHEAT (Splicing factor U2af large subunit B OS=Triticum aestivum GN=U2AF65B PE=2 SV=1)

HSP 1 Score: 390.193 bits (1001), Expect = 6.326e-108
Identity = 185/224 (82.59%), Postives = 209/224 (93.30%), Query Frame = 1
Query:    1 PGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDYE 672
            PGSAGGLEGPDRIFVGGLPYYFTEAQ+RELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDL+VTDIACAALNGIKMGDKTLTVRRANQG+ QP+PEQE++LL AQQQ+ LQ+L+ Q G++P+KVVCLTQVV+ADELKDDEEYE+I+EDMR E GK+G LV V+IPRP+P+GEP  GVGKVFLEYAD+DG+TKA+T M+GRKFGGN VVAVFYPENKFA  DY+
Sbjct:  317 PGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLNVTDIACAALNGIKMGDKTLTVRRANQGSAQPRPEQENILLQAQQQVQLQKLVYQVGALPTKVVCLTQVVTADELKDDEEYEDIMEDMRLEAGKYGNLVKVVIPRPHPSGEPVSGVGKVFLEYADVDGSTKAKTAMHGRKFGGNPVVAVFYPENKFADEDYD 540          
BLAST of CX676537 vs. ExPASy Swiss-Prot
Match: U2A2B_ORYSJ (Splicing factor U2af large subunit B OS=Oryza sativa subsp. japonica GN=U2AF65B PE=2 SV=2)

HSP 1 Score: 389.423 bits (999), Expect = 1.079e-107
Identity = 185/224 (82.59%), Postives = 208/224 (92.86%), Query Frame = 1
Query:    1 PGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDYE 672
            PGSAGGLEGPDRIFVGGLPYYFTEAQ+RELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDL+VTDIACAALNGIKMGDKTLTVRRANQGA QP+PEQES+LL AQQQ+ LQ+L+ Q G++P+KVVCLTQVVSADELKDDEEYE+I+EDMR E GK+G L+ V+IPRP+P+G P  GVGKVFLEYAD+DGATKA+T M+GRKFGGN VVAVFYPENKF+  +Y+
Sbjct:  324 PGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLNVTDIACAALNGIKMGDKTLTVRRANQGAAQPRPEQESILLQAQQQVQLQKLVYQVGALPTKVVCLTQVVSADELKDDEEYEDIMEDMRLEAGKYGNLIKVVIPRPDPSGLPVAGVGKVFLEYADVDGATKAKTAMHGRKFGGNPVVAVFYPENKFSSAEYD 547          
BLAST of CX676537 vs. ExPASy Swiss-Prot
Match: U2A2A_ARATH (Splicing factor U2af large subunit A OS=Arabidopsis thaliana GN=U2AF65A PE=2 SV=2)

HSP 1 Score: 385.956 bits (990), Expect = 1.193e-106
Identity = 184/223 (82.51%), Postives = 206/223 (92.38%), Query Frame = 1
Query:    1 PGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDY 669
            PG++GGLEGPDRIFVGGLPYYFTE+Q+RELLESFG L+GFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG    KPEQE+VLLHAQQQIA QR+MLQPG+V + VVCLTQVV+ DEL+DDEEY +I+EDMRQEGGKFG L NV+IPRP+PNGEP  G+GKVFL+YAD DG+T+AR GMNGRKFGGN+VVAV+YPE+KF QGDY
Sbjct:  349 PGASGGLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGTMLQKPEQENVLLHAQQQIAFQRVMLQPGAVATTVVCLTQVVTEDELRDDEEYGDIMEDMRQEGGKFGALTNVVIPRPSPNGEPVAGLGKVFLKYADTDGSTRARFGMNGRKFGGNEVVAVYYPEDKFEQGDY 571          
BLAST of CX676537 vs. ExPASy Swiss-Prot
Match: U2A2A_ORYSJ (Splicing factor U2af large subunit A OS=Oryza sativa subsp. japonica GN=U2AF65A PE=2 SV=2)

HSP 1 Score: 375.941 bits (964), Expect = 1.235e-103
Identity = 178/227 (78.41%), Postives = 208/227 (91.63%), Query Frame = 1
Query:    1 PGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQ--PGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDYEG 675
            PGSAGGLEGPDRIFVGGLPYYFTEAQ+RELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDL+VTDIACAALNGIKMGDKTLTVRRANQGA+QP+PEQES+LLH QQQ  +Q+LM Q   G++P+KVVCLTQVVS DEL+DDEEYE+I++DMR+EG ++G LV V+IPRP+P+G P  GVG+VFLE+AD++ +TKA+ GM+GRKF  NQVVAVFYPE+KFA+G Y+G
Sbjct:  348 PGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLNVTDIACAALNGIKMGDKTLTVRRANQGASQPRPEQESMLLHVQQQAQMQKLMFQVGGGALPTKVVCLTQVVSPDELRDDEEYEDIVQDMREEGCRYGNLVKVVIPRPDPSGAPVAGVGRVFLEFADVESSTKAKNGMHGRKFANNQVVAVFYPEDKFAEGQYDG 574          
BLAST of CX676537 vs. ExPASy Swiss-Prot
Match: U2A2A_WHEAT (Splicing factor U2af large subunit A OS=Triticum aestivum GN=U2AF65A PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.475e-64
Identity = 121/173 (69.94%), Postives = 150/173 (86.71%), Query Frame = 1
Query:    1 PGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPG-SVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKF---GTLVNVIIPRPN 507
            PG+ GGLEGPDRIFVGGLPYYFTEAQ+RELLE+FGPLRGFD+VKD+ETGNSKGYAFC+Y+D +VTDIACAALNGI++GD+TLTVRRANQGA +P+PEQE++LL AQQ+  ++RL+ + G ++ +KVVCLTQVVSAD+L+DDEEY +ILEDM  EG K+    T+    I RP+
Sbjct:  382 PGAGGGLEGPDRIFVGGLPYYFTEAQVRELLETFGPLRGFDIVKDKETGNSKGYAFCLYKDGTVTDIACAALNGIQLGDRTLTVRRANQGA-EPRPEQENILLQAQQEAQMKRLVYEVGRTLTTKVVCLTQVVSADDLRDDEEYNDILEDMTLEGHKYVPHSTIAESFIIRPH 553          
BLAST of CX676537 vs. ExPASy Swiss-Prot
Match: U2AF2_HUMAN (Splicing factor U2AF 65 kDa subunit OS=Homo sapiens GN=U2AF2 PE=1 SV=4)

HSP 1 Score: 180.644 bits (457), Expect = 7.612e-45
Identity = 96/216 (44.44%), Postives = 137/216 (63.43%), Query Frame = 1
Query:   34 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGA-NQPKPEQESVLLHAQQQIALQRLM---LQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDY 669
            ++F+GGLP Y  + Q++ELL SFGPL+ F+LVKD  TG SKGYAFC Y D++VTD A A LNG+++GDK L V+RA+ GA N       S +      + +  LM   +Q G  P++V+CL  +V  +EL DDEEYEEI+ED+R E  K+G + ++ IPRP  +G   PG GK+F+E+  +    KA  G+ GRKF    VV  +   + + + D+
Sbjct:  260 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLVSPPSTINQTPVTLQVPGLMSSQVQMGGHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRP-VDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHRRDF 474          
BLAST of CX676537 vs. ExPASy Swiss-Prot
Match: U2AF2_MOUSE (Splicing factor U2AF 65 kDa subunit OS=Mus musculus GN=U2af2 PE=1 SV=3)

HSP 1 Score: 180.259 bits (456), Expect = 9.942e-45
Identity = 96/216 (44.44%), Postives = 137/216 (63.43%), Query Frame = 1
Query:   34 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGA-NQPKPEQESVLLHAQQQIALQRLM---LQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDY 669
            ++F+GGLP Y  + Q++ELL SFGPL+ F+LVKD  TG SKGYAFC Y D++VTD A A LNG+++GDK L V+RA+ GA N       S +      + +  LM   +Q G  P++V+CL  +V  +EL DDEEYEEI+ED+R E  K+G + ++ IPRP  +G   PG GK+F+E+  +    KA  G+ GRKF    VV  +   + + + D+
Sbjct:  260 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLVSLPSTINQTPVTLQVPGLMSSQVQMGGHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRP-VDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHRRDF 474          
The following BLAST results are available for this feature:
BLAST of CX676537 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
U2A2B_NICPL4.233e-11285.78Splicing factor U2af large subunit B OS=Nicotiana ... [more]
U2A2B_ARATH2.101e-11186.10Splicing factor U2af large subunit B OS=Arabidopsi... [more]
U2A2A_NICPL5.175e-11083.93Splicing factor U2af large subunit A OS=Nicotiana ... [more]
U2A2B_WHEAT6.326e-10882.59Splicing factor U2af large subunit B OS=Triticum a... [more]
U2A2B_ORYSJ1.079e-10782.59Splicing factor U2af large subunit B OS=Oryza sati... [more]
U2A2A_ARATH1.193e-10682.51Splicing factor U2af large subunit A OS=Arabidopsi... [more]
U2A2A_ORYSJ1.235e-10378.41Splicing factor U2af large subunit A OS=Oryza sati... [more]
U2A2A_WHEAT1.475e-6469.94Splicing factor U2af large subunit A OS=Triticum a... [more]
U2AF2_HUMAN7.612e-4544.44Splicing factor U2AF 65 kDa subunit OS=Homo sapien... [more]
U2AF2_MOUSE9.942e-4544.44Splicing factor U2AF 65 kDa subunit OS=Mus musculu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_70E07_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-70E07-I14-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676537 ID=CX676537; Name=CX676537; organism=Citrus sinensis; type=EST; length=744bp
CCTGGTTCCGCTGGTGGGCTTGAGGGTCCAGACCGCATTTTTGTCGGTGG
GCTCCCCTATTACTTCACAGAAGCACAGATCAGGGAATTGTTGGAGTCTT
TTGGGCCCCTGCGTGGTTTTGATCTAGTTAAAGATAGAGAAACTGGAAAC
TCAAAGGGCTATGCGTTTTGTGTTTACCAAGATCTTTCAGTTACAGATAT
AGCATGTGCTGCCTTGAATGGGATTAAAATGGGAGATAAGACTCTCACAG
TTAGACGGGCGAACCAGGGTGCCAACCAACCTAAACCAGAGCAAGAGAGT
GTATTATTGCATGCCCAGCAGCAGATTGCATTGCAGAGGCTTATGTTACA
ACCTGGTTCAGTTCCTTCGAAGGTTGTGTGCTTAACTCAAGTAGTTTCTG
CAGATGAGCTTAAAGATGATGAAGAGTATGAAGAAATTTTGGAAGATATG
AGACAAGAAGGCGGAAAATTCGGTACATTGGTGAATGTTATCATCCCGCG
CCCAAATCCCAATGGCGAGCCATCACCAGGAGTTGGGAAGGTGTTCTTAG
AATATGCAGATATTGATGGTGCTACAAAAGCTCGAACAGGGATGAACGGA
AGAAAATTTGGTGGAAATCAAGTTGTTGCTGTATTTTATCCAGAGAACAA
ATTTGCCCAGGGGGATTATGAAGGCTAATAGTTGTTTTTCTAGCATTACT
TGTGGAATTCTCTCCCCTGATGTTCTATCAAATAGATCTAGCTT
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