CX676537
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX676537 vs. ExPASy Swiss-Prot
Match: U2A2B_NICPL (Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia GN=U2AF65B PE=2 SV=1) HSP 1 Score: 404.06 bits (1037), Expect = 4.233e-112 Identity = 193/225 (85.78%), Postives = 213/225 (94.67%), Query Frame = 1 Query: 1 PGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDYEG 675 PGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQD+SVTDIACAALNGIKMGDKTLTVRRANQG QPKPEQESVLLHAQQQIALQRLMLQP ++ +KV+ LT+V+SADEL DDE+Y++ILEDMR E GKFG+LVNV+IPRP+PNGEP+PGVGKVFLEYAD+D ++KAR +NGRKFGGNQVVAVFYPENKF +GDY+G Sbjct: 349 PGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDVSVTDIACAALNGIKMGDKTLTVRRANQGTTQPKPEQESVLLHAQQQIALQRLMLQPATLATKVLSLTEVISADELNDDEDYQDILEDMRTECGKFGSLVNVVIPRPSPNGEPTPGVGKVFLEYADVDSSSKARQSLNGRKFGGNQVVAVFYPENKFYEGDYDG 573
BLAST of CX676537 vs. ExPASy Swiss-Prot
Match: U2A2B_ARATH (Splicing factor U2af large subunit B OS=Arabidopsis thaliana GN=U2AF65B PE=2 SV=2) HSP 1 Score: 401.749 bits (1031), Expect = 2.101e-111 Identity = 192/223 (86.10%), Postives = 211/223 (94.62%), Query Frame = 1 Query: 4 GSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDYE 672 GS GGLEGPDRIFVGGLPYYFTE QIRELLESFGPLRGF+LVKDRETGNSKGYAFCVYQD SVTDIACAALNGIKMGDKTLTVRRA QGA QPKPEQE VLL+AQQQIALQRLM QPG P+K+VCLTQVV+AD+L+DDEEY EI+EDMRQEGGKFG LVNV+IPRPNP+ +P+PGVGKVFLEYAD+DG++KAR+GMNGRKFGGNQVVAV+YPE+K+AQGDYE Sbjct: 366 GSTGGLEGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAALNGIKMGDKTLTVRRAIQGAIQPKPEQEEVLLYAQQQIALQRLMFQPGGTPTKIVCLTQVVTADDLRDDEEYAEIMEDMRQEGGKFGNLVNVVIPRPNPDHDPTPGVGKVFLEYADVDGSSKARSGMNGRKFGGNQVVAVYYPEDKYAQGDYE 588
BLAST of CX676537 vs. ExPASy Swiss-Prot
Match: U2A2A_NICPL (Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia GN=U2AF65A PE=2 SV=1) HSP 1 Score: 397.127 bits (1019), Expect = 5.175e-110 Identity = 188/224 (83.93%), Postives = 210/224 (93.75%), Query Frame = 1 Query: 1 PGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDYE 672 PGS+GGLEGPDRIFVGGLPYYFTE+QIRELLESFG LRGFDLVKDRETGNSKGYAFCVYQD+SVTDIACAALNGIKMGDKTLTVRRANQG QP PEQESVLLHAQQQIALQR MLQPG++ +KV+CLT+VV+ DEL DD++Y++ILEDMR E KFG LVNV+IPRPNPNG P+PG+GKVFLEYAD+DG++KAR G+NGRKFGGNQVVAVFYPENKF++GDYE Sbjct: 331 PGSSGGLEGPDRIFVGGLPYYFTESQIRELLESFGQLRGFDLVKDRETGNSKGYAFCVYQDVSVTDIACAALNGIKMGDKTLTVRRANQGTTQPNPEQESVLLHAQQQIALQRFMLQPGALATKVLCLTEVVTVDELNDDDDYQDILEDMRTECEKFGALVNVVIPRPNPNGVPTPGLGKVFLEYADVDGSSKARQGLNGRKFGGNQVVAVFYPENKFSEGDYE 554
BLAST of CX676537 vs. ExPASy Swiss-Prot
Match: U2A2B_WHEAT (Splicing factor U2af large subunit B OS=Triticum aestivum GN=U2AF65B PE=2 SV=1) HSP 1 Score: 390.193 bits (1001), Expect = 6.326e-108 Identity = 185/224 (82.59%), Postives = 209/224 (93.30%), Query Frame = 1 Query: 1 PGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDYE 672 PGSAGGLEGPDRIFVGGLPYYFTEAQ+RELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDL+VTDIACAALNGIKMGDKTLTVRRANQG+ QP+PEQE++LL AQQQ+ LQ+L+ Q G++P+KVVCLTQVV+ADELKDDEEYE+I+EDMR E GK+G LV V+IPRP+P+GEP GVGKVFLEYAD+DG+TKA+T M+GRKFGGN VVAVFYPENKFA DY+ Sbjct: 317 PGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLNVTDIACAALNGIKMGDKTLTVRRANQGSAQPRPEQENILLQAQQQVQLQKLVYQVGALPTKVVCLTQVVTADELKDDEEYEDIMEDMRLEAGKYGNLVKVVIPRPHPSGEPVSGVGKVFLEYADVDGSTKAKTAMHGRKFGGNPVVAVFYPENKFADEDYD 540
BLAST of CX676537 vs. ExPASy Swiss-Prot
Match: U2A2B_ORYSJ (Splicing factor U2af large subunit B OS=Oryza sativa subsp. japonica GN=U2AF65B PE=2 SV=2) HSP 1 Score: 389.423 bits (999), Expect = 1.079e-107 Identity = 185/224 (82.59%), Postives = 208/224 (92.86%), Query Frame = 1 Query: 1 PGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDYE 672 PGSAGGLEGPDRIFVGGLPYYFTEAQ+RELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDL+VTDIACAALNGIKMGDKTLTVRRANQGA QP+PEQES+LL AQQQ+ LQ+L+ Q G++P+KVVCLTQVVSADELKDDEEYE+I+EDMR E GK+G L+ V+IPRP+P+G P GVGKVFLEYAD+DGATKA+T M+GRKFGGN VVAVFYPENKF+ +Y+ Sbjct: 324 PGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLNVTDIACAALNGIKMGDKTLTVRRANQGAAQPRPEQESILLQAQQQVQLQKLVYQVGALPTKVVCLTQVVSADELKDDEEYEDIMEDMRLEAGKYGNLIKVVIPRPDPSGLPVAGVGKVFLEYADVDGATKAKTAMHGRKFGGNPVVAVFYPENKFSSAEYD 547
BLAST of CX676537 vs. ExPASy Swiss-Prot
Match: U2A2A_ARATH (Splicing factor U2af large subunit A OS=Arabidopsis thaliana GN=U2AF65A PE=2 SV=2) HSP 1 Score: 385.956 bits (990), Expect = 1.193e-106 Identity = 184/223 (82.51%), Postives = 206/223 (92.38%), Query Frame = 1 Query: 1 PGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDY 669 PG++GGLEGPDRIFVGGLPYYFTE+Q+RELLESFG L+GFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQG KPEQE+VLLHAQQQIA QR+MLQPG+V + VVCLTQVV+ DEL+DDEEY +I+EDMRQEGGKFG L NV+IPRP+PNGEP G+GKVFL+YAD DG+T+AR GMNGRKFGGN+VVAV+YPE+KF QGDY Sbjct: 349 PGASGGLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGTMLQKPEQENVLLHAQQQIAFQRVMLQPGAVATTVVCLTQVVTEDELRDDEEYGDIMEDMRQEGGKFGALTNVVIPRPSPNGEPVAGLGKVFLKYADTDGSTRARFGMNGRKFGGNEVVAVYYPEDKFEQGDY 571
BLAST of CX676537 vs. ExPASy Swiss-Prot
Match: U2A2A_ORYSJ (Splicing factor U2af large subunit A OS=Oryza sativa subsp. japonica GN=U2AF65A PE=2 SV=2) HSP 1 Score: 375.941 bits (964), Expect = 1.235e-103 Identity = 178/227 (78.41%), Postives = 208/227 (91.63%), Query Frame = 1 Query: 1 PGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQ--PGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDYEG 675 PGSAGGLEGPDRIFVGGLPYYFTEAQ+RELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDL+VTDIACAALNGIKMGDKTLTVRRANQGA+QP+PEQES+LLH QQQ +Q+LM Q G++P+KVVCLTQVVS DEL+DDEEYE+I++DMR+EG ++G LV V+IPRP+P+G P GVG+VFLE+AD++ +TKA+ GM+GRKF NQVVAVFYPE+KFA+G Y+G Sbjct: 348 PGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLNVTDIACAALNGIKMGDKTLTVRRANQGASQPRPEQESMLLHVQQQAQMQKLMFQVGGGALPTKVVCLTQVVSPDELRDDEEYEDIVQDMREEGCRYGNLVKVVIPRPDPSGAPVAGVGRVFLEFADVESSTKAKNGMHGRKFANNQVVAVFYPEDKFAEGQYDG 574
BLAST of CX676537 vs. ExPASy Swiss-Prot
Match: U2A2A_WHEAT (Splicing factor U2af large subunit A OS=Triticum aestivum GN=U2AF65A PE=2 SV=1) HSP 1 Score: 246.128 bits (627), Expect = 1.475e-64 Identity = 121/173 (69.94%), Postives = 150/173 (86.71%), Query Frame = 1 Query: 1 PGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPG-SVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKF---GTLVNVIIPRPN 507 PG+ GGLEGPDRIFVGGLPYYFTEAQ+RELLE+FGPLRGFD+VKD+ETGNSKGYAFC+Y+D +VTDIACAALNGI++GD+TLTVRRANQGA +P+PEQE++LL AQQ+ ++RL+ + G ++ +KVVCLTQVVSAD+L+DDEEY +ILEDM EG K+ T+ I RP+ Sbjct: 382 PGAGGGLEGPDRIFVGGLPYYFTEAQVRELLETFGPLRGFDIVKDKETGNSKGYAFCLYKDGTVTDIACAALNGIQLGDRTLTVRRANQGA-EPRPEQENILLQAQQEAQMKRLVYEVGRTLTTKVVCLTQVVSADDLRDDEEYNDILEDMTLEGHKYVPHSTIAESFIIRPH 553
BLAST of CX676537 vs. ExPASy Swiss-Prot
Match: U2AF2_HUMAN (Splicing factor U2AF 65 kDa subunit OS=Homo sapiens GN=U2AF2 PE=1 SV=4) HSP 1 Score: 180.644 bits (457), Expect = 7.612e-45 Identity = 96/216 (44.44%), Postives = 137/216 (63.43%), Query Frame = 1 Query: 34 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGA-NQPKPEQESVLLHAQQQIALQRLM---LQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDY 669 ++F+GGLP Y + Q++ELL SFGPL+ F+LVKD TG SKGYAFC Y D++VTD A A LNG+++GDK L V+RA+ GA N S + + + LM +Q G P++V+CL +V +EL DDEEYEEI+ED+R E K+G + ++ IPRP +G PG GK+F+E+ + KA G+ GRKF VV + + + + D+ Sbjct: 260 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLVSPPSTINQTPVTLQVPGLMSSQVQMGGHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRP-VDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHRRDF 474
BLAST of CX676537 vs. ExPASy Swiss-Prot
Match: U2AF2_MOUSE (Splicing factor U2AF 65 kDa subunit OS=Mus musculus GN=U2af2 PE=1 SV=3) HSP 1 Score: 180.259 bits (456), Expect = 9.942e-45 Identity = 96/216 (44.44%), Postives = 137/216 (63.43%), Query Frame = 1 Query: 34 RIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGA-NQPKPEQESVLLHAQQQIALQRLM---LQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDY 669 ++F+GGLP Y + Q++ELL SFGPL+ F+LVKD TG SKGYAFC Y D++VTD A A LNG+++GDK L V+RA+ GA N S + + + LM +Q G P++V+CL +V +EL DDEEYEEI+ED+R E K+G + ++ IPRP +G PG GK+F+E+ + KA G+ GRKF VV + + + + D+ Sbjct: 260 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLVSLPSTINQTPVTLQVPGLMSSQVQMGGHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRP-VDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHRRDF 474 The following BLAST results are available for this feature:
BLAST of CX676537 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 22
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX676537 ID=CX676537; Name=CX676537; organism=Citrus sinensis; type=EST; length=744bpback to top |