CX676536

Overview
NameCX676536
Unique NameCX676536
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676536 vs. ExPASy Swiss-Prot
Match: U2A2B_ARATH (Splicing factor U2af large subunit B OS=Arabidopsis thaliana GN=U2AF65B PE=2 SV=2)

HSP 1 Score: 285.419 bits (729), Expect = 2.332e-76
Identity = 136/164 (82.93%), Postives = 154/164 (93.90%), Query Frame = -3
Query:  285 DLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDYE 776
            D SVTDIACAALNGIKMGDKTLTVRRA QGA QPKPEQE VLL+AQQQIALQRLM QPG  P+K+VCLTQVV+AD+L+DDEEY EI+EDMRQEGGKFG LVNV+IPRPNP+ +P+PGVGKVFLEYAD+DG++KAR+GMNGRKFGGNQVVAV+YPE+K+AQGDYE
Sbjct:  425 DPSVTDIACAALNGIKMGDKTLTVRRAIQGAIQPKPEQEEVLLYAQQQIALQRLMFQPGGTPTKIVCLTQVVTADDLRDDEEYAEIMEDMRQEGGKFGNLVNVVIPRPNPDHDPTPGVGKVFLEYADVDGSSKARSGMNGRKFGGNQVVAVYYPEDKYAQGDYE 588          
BLAST of CX676536 vs. ExPASy Swiss-Prot
Match: U2A2B_NICPL (Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia GN=U2AF65B PE=2 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 9.798e-75
Identity = 133/165 (80.61%), Postives = 153/165 (92.73%), Query Frame = -3
Query:  282 DLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDYEG 776
            D+SVTDIACAALNGIKMGDKTLTVRRANQG  QPKPEQESVLLHAQQQIALQRLMLQP ++ +KV+ LT+V+SADEL DDE+Y++ILEDMR E GKFG+LVNV+IPRP+PNGEP+PGVGKVFLEYAD+D ++KAR  +NGRKFGGNQVVAVFYPENKF +GDY+G
Sbjct:  409 DVSVTDIACAALNGIKMGDKTLTVRRANQGTTQPKPEQESVLLHAQQQIALQRLMLQPATLATKVLSLTEVISADELNDDEDYQDILEDMRTECGKFGSLVNVVIPRPSPNGEPTPGVGKVFLEYADVDSSSKARQSLNGRKFGGNQVVAVFYPENKFYEGDYDG 573          
BLAST of CX676536 vs. ExPASy Swiss-Prot
Match: U2A2A_NICPL (Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia GN=U2AF65A PE=2 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 2.851e-74
Identity = 131/164 (79.88%), Postives = 151/164 (92.07%), Query Frame = -3
Query:  285 DLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDYE 776
            D+SVTDIACAALNGIKMGDKTLTVRRANQG  QP PEQESVLLHAQQQIALQR MLQPG++ +KV+CLT+VV+ DEL DD++Y++ILEDMR E  KFG LVNV+IPRPNPNG P+PG+GKVFLEYAD+DG++KAR G+NGRKFGGNQVVAVFYPENKF++GDYE
Sbjct:  391 DVSVTDIACAALNGIKMGDKTLTVRRANQGTTQPNPEQESVLLHAQQQIALQRFMLQPGALATKVLCLTEVVTVDELNDDDDYQDILEDMRTECEKFGALVNVVIPRPNPNGVPTPGLGKVFLEYADVDGSSKARQGLNGRKFGGNQVVAVFYPENKFSEGDYE 554          
BLAST of CX676536 vs. ExPASy Swiss-Prot
Match: U2A2A_ARATH (Splicing factor U2af large subunit A OS=Arabidopsis thaliana GN=U2AF65A PE=2 SV=2)

HSP 1 Score: 270.396 bits (690), Expect = 7.763e-72
Identity = 130/163 (79.75%), Postives = 147/163 (90.18%), Query Frame = -3
Query:  288 DLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDY 776
            DLSVTDIACAALNGIKMGDKTLTVRRANQG    KPEQE+VLLHAQQQIA QR+MLQPG+V + VVCLTQVV+ DEL+DDEEY +I+EDMRQEGGKFG L NV+IPRP+PNGEP  G+GKVFL+YAD DG+T+AR GMNGRKFGGN+VVAV+YPE+KF QGDY
Sbjct:  409 DLSVTDIACAALNGIKMGDKTLTVRRANQGTMLQKPEQENVLLHAQQQIAFQRVMLQPGAVATTVVCLTQVVTEDELRDDEEYGDIMEDMRQEGGKFGALTNVVIPRPSPNGEPVAGLGKVFLKYADTDGSTRARFGMNGRKFGGNEVVAVYYPEDKFEQGDY 571          
BLAST of CX676536 vs. ExPASy Swiss-Prot
Match: U2A2B_WHEAT (Splicing factor U2af large subunit B OS=Triticum aestivum GN=U2AF65B PE=2 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 1.121e-70
Identity = 126/164 (76.83%), Postives = 149/164 (90.85%), Query Frame = -3
Query:  285 DLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDYE 776
            DL+VTDIACAALNGIKMGDKTLTVRRANQG+ QP+PEQE++LL AQQQ+ LQ+L+ Q G++P+KVVCLTQVV+ADELKDDEEYE+I+EDMR E GK+G LV V+IPRP+P+GEP  GVGKVFLEYAD+DG+TKA+T M+GRKFGGN VVAVFYPENKFA  DY+
Sbjct:  377 DLNVTDIACAALNGIKMGDKTLTVRRANQGSAQPRPEQENILLQAQQQVQLQKLVYQVGALPTKVVCLTQVVTADELKDDEEYEDIMEDMRLEAGKYGNLVKVVIPRPHPSGEPVSGVGKVFLEYADVDGSTKAKTAMHGRKFGGNPVVAVFYPENKFADEDYD 540          
BLAST of CX676536 vs. ExPASy Swiss-Prot
Match: U2A2B_ORYSJ (Splicing factor U2af large subunit B OS=Oryza sativa subsp. japonica GN=U2AF65B PE=2 SV=2)

HSP 1 Score: 265.774 bits (678), Expect = 1.912e-70
Identity = 126/164 (76.83%), Postives = 148/164 (90.24%), Query Frame = -3
Query:  285 DLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDYE 776
            DL+VTDIACAALNGIKMGDKTLTVRRANQGA QP+PEQES+LL AQQQ+ LQ+L+ Q G++P+KVVCLTQVVSADELKDDEEYE+I+EDMR E GK+G L+ V+IPRP+P+G P  GVGKVFLEYAD+DGATKA+T M+GRKFGGN VVAVFYPENKF+  +Y+
Sbjct:  384 DLNVTDIACAALNGIKMGDKTLTVRRANQGAAQPRPEQESILLQAQQQVQLQKLVYQVGALPTKVVCLTQVVSADELKDDEEYEDIMEDMRLEAGKYGNLIKVVIPRPDPSGLPVAGVGKVFLEYADVDGATKAKTAMHGRKFGGNPVVAVFYPENKFSSAEYD 547          
BLAST of CX676536 vs. ExPASy Swiss-Prot
Match: U2A2A_ORYSJ (Splicing factor U2af large subunit A OS=Oryza sativa subsp. japonica GN=U2AF65A PE=2 SV=2)

HSP 1 Score: 252.292 bits (643), Expect = 2.188e-66
Identity = 119/167 (71.26%), Postives = 148/167 (88.62%), Query Frame = -3
Query:  282 DLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPG--SVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDYEG 776
            DL+VTDIACAALNGIKMGDKTLTVRRANQGA+QP+PEQES+LLH QQQ  +Q+LM Q G  ++P+KVVCLTQVVS DEL+DDEEYE+I++DMR+EG ++G LV V+IPRP+P+G P  GVG+VFLE+AD++ +TKA+ GM+GRKF  NQVVAVFYPE+KFA+G Y+G
Sbjct:  408 DLNVTDIACAALNGIKMGDKTLTVRRANQGASQPRPEQESMLLHVQQQAQMQKLMFQVGGGALPTKVVCLTQVVSPDELRDDEEYEDIVQDMREEGCRYGNLVKVVIPRPDPSGAPVAGVGRVFLEFADVESSTKAKNGMHGRKFANNQVVAVFYPEDKFAEGQYDG 574          
BLAST of CX676536 vs. ExPASy Swiss-Prot
Match: U2A2A_WHEAT (Splicing factor U2af large subunit A OS=Triticum aestivum GN=U2AF65A PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.351e-30
Identity = 69/113 (61.06%), Postives = 91/113 (80.53%), Query Frame = -3
Query:  450 DLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPG-SVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKF---GTLVNVIIPRPN 776
            D +VTDIACAALNGI++GD+TLTVRRANQGA +P+PEQE++LL AQQ+  ++RL+ + G ++ +KVVCLTQVVSAD+L+DDEEY +ILEDM  EG K+    T+    I RP+
Sbjct:  442 DGTVTDIACAALNGIQLGDRTLTVRRANQGA-EPRPEQENILLQAQQEAQMKRLVYEVGRTLTTKVVCLTQVVSADDLRDDEEYNDILEDMTLEGHKYVPHSTIAESFIIRPH 553          
BLAST of CX676536 vs. ExPASy Swiss-Prot
Match: U2AF2_HUMAN (Splicing factor U2AF 65 kDa subunit OS=Homo sapiens GN=U2AF2 PE=1 SV=4)

HSP 1 Score: 115.931 bits (289), Expect = 2.447e-25
Identity = 66/167 (39.52%), Postives = 99/167 (59.28%), Query Frame = -3
Query:  288 DLSVTDIACAALNGIKMGDKTLTVRRANQGA-NQPKPEQESVLLHAQQQIALQRLM---LQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDY 776
            D++VTD A A LNG+++GDK L V+RA+ GA N       S +      + +  LM   +Q G  P++V+CL  +V  +EL DDEEYEEI+ED+R E  K+G + ++ IPRP  +G   PG GK+F+E+  +    KA  G+ GRKF    VV  +   + + + D+
Sbjct:  309 DINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLVSPPSTINQTPVTLQVPGLMSSQVQMGGHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRP-VDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHRRDF 474          
BLAST of CX676536 vs. ExPASy Swiss-Prot
Match: U2AF2_MOUSE (Splicing factor U2AF 65 kDa subunit OS=Mus musculus GN=U2af2 PE=1 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 3.196e-25
Identity = 66/167 (39.52%), Postives = 99/167 (59.28%), Query Frame = -3
Query:  288 DLSVTDIACAALNGIKMGDKTLTVRRANQGA-NQPKPEQESVLLHAQQQIALQRLM---LQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDY 776
            D++VTD A A LNG+++GDK L V+RA+ GA N       S +      + +  LM   +Q G  P++V+CL  +V  +EL DDEEYEEI+ED+R E  K+G + ++ IPRP  +G   PG GK+F+E+  +    KA  G+ GRKF    VV  +   + + + D+
Sbjct:  309 DINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLVSLPSTINQTPVTLQVPGLMSSQVQMGGHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRP-VDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHRRDF 474          
The following BLAST results are available for this feature:
BLAST of CX676536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
U2A2B_ARATH2.332e-7682.93Splicing factor U2af large subunit B OS=Arabidopsi... [more]
U2A2B_NICPL9.798e-7580.61Splicing factor U2af large subunit B OS=Nicotiana ... [more]
U2A2A_NICPL2.851e-7479.88Splicing factor U2af large subunit A OS=Nicotiana ... [more]
U2A2A_ARATH7.763e-7279.75Splicing factor U2af large subunit A OS=Arabidopsi... [more]
U2A2B_WHEAT1.121e-7076.83Splicing factor U2af large subunit B OS=Triticum a... [more]
U2A2B_ORYSJ1.912e-7076.83Splicing factor U2af large subunit B OS=Oryza sati... [more]
U2A2A_ORYSJ2.188e-6671.26Splicing factor U2af large subunit A OS=Oryza sati... [more]
U2A2A_WHEAT7.351e-3061.06Splicing factor U2af large subunit A OS=Triticum a... [more]
U2AF2_HUMAN2.447e-2539.52Splicing factor U2AF 65 kDa subunit OS=Homo sapien... [more]
U2AF2_MOUSE3.196e-2539.52Splicing factor U2AF 65 kDa subunit OS=Mus musculu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_70E07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-70E07-I14-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676536 ID=CX676536; Name=CX676536; organism=Citrus sinensis; type=EST; length=778bp
TTTTTTTTTTTTTTTTTGCTGATTTTAAATTACAACTAATGCAGAAATCT
TCCAACAAAATTGTATTTGCACACCAATAGATTATAGAACAGGGTCATCC
ATTATAGTTCGGAAACAGAATTATATTCATTATGACCTCTGAGAAAAAAG
AATTAATTAAGAACTAAAAACCCAACACTGCAAGCTCTCCTCGAGAACAT
CACTGTACCCTAAAGCTAGATCTATTTGATAGAACATCAGGGGAGAGAAT
TCCACAAGTAATGCTAGAAAAACAACTATTAGCCTTCATAATCCCCCTGG
GCAAATTTGTTCTCTGGATAAAATACAGCAACAACTTGATTTCCACCAAA
TTTTCTTCCGTTCATCCCTGTTCGAGCTTTTGTAGCACCATCAATATCTG
CATATTCTAAGAACACCTTCCCAACTCCTGGTGATGGCTCGCCATTGGGA
TTTGGGCGCGGGATGATAACATTCACCAATGTACCGAATTTTCCGCCTTC
TTGTCTCATATCTTCCAAAATTTCTTCATACTCTTCATCATCTTTAAGCT
CATCTGCAGAAACTACTTGAGTTAAGCACACAACCTTCGAAGGAACTGAA
CCAGGTTGTAACATAAGCCTCTGCAATGCAATCTGCTGCTGGGCATGCAA
TAATACACTCTCTTGCTCTGGTTTAGGTTGGTTGGCACCCTGGTTCGCCC
GTCTAACTGTGAGAGTCTTATCTCCCATTTTAATCCCATTCAAGGCAGCA
CATGCTATATCTGTAACTGAAAGATCTT
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