CX676536
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX676536 vs. ExPASy Swiss-Prot
Match: U2A2B_ARATH (Splicing factor U2af large subunit B OS=Arabidopsis thaliana GN=U2AF65B PE=2 SV=2) HSP 1 Score: 285.419 bits (729), Expect = 2.332e-76 Identity = 136/164 (82.93%), Postives = 154/164 (93.90%), Query Frame = -3 Query: 285 DLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDYE 776 D SVTDIACAALNGIKMGDKTLTVRRA QGA QPKPEQE VLL+AQQQIALQRLM QPG P+K+VCLTQVV+AD+L+DDEEY EI+EDMRQEGGKFG LVNV+IPRPNP+ +P+PGVGKVFLEYAD+DG++KAR+GMNGRKFGGNQVVAV+YPE+K+AQGDYE Sbjct: 425 DPSVTDIACAALNGIKMGDKTLTVRRAIQGAIQPKPEQEEVLLYAQQQIALQRLMFQPGGTPTKIVCLTQVVTADDLRDDEEYAEIMEDMRQEGGKFGNLVNVVIPRPNPDHDPTPGVGKVFLEYADVDGSSKARSGMNGRKFGGNQVVAVYYPEDKYAQGDYE 588
BLAST of CX676536 vs. ExPASy Swiss-Prot
Match: U2A2B_NICPL (Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia GN=U2AF65B PE=2 SV=1) HSP 1 Score: 280.026 bits (715), Expect = 9.798e-75 Identity = 133/165 (80.61%), Postives = 153/165 (92.73%), Query Frame = -3 Query: 282 DLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDYEG 776 D+SVTDIACAALNGIKMGDKTLTVRRANQG QPKPEQESVLLHAQQQIALQRLMLQP ++ +KV+ LT+V+SADEL DDE+Y++ILEDMR E GKFG+LVNV+IPRP+PNGEP+PGVGKVFLEYAD+D ++KAR +NGRKFGGNQVVAVFYPENKF +GDY+G Sbjct: 409 DVSVTDIACAALNGIKMGDKTLTVRRANQGTTQPKPEQESVLLHAQQQIALQRLMLQPATLATKVLSLTEVISADELNDDEDYQDILEDMRTECGKFGSLVNVVIPRPSPNGEPTPGVGKVFLEYADVDSSSKARQSLNGRKFGGNQVVAVFYPENKFYEGDYDG 573
BLAST of CX676536 vs. ExPASy Swiss-Prot
Match: U2A2A_NICPL (Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia GN=U2AF65A PE=2 SV=1) HSP 1 Score: 278.485 bits (711), Expect = 2.851e-74 Identity = 131/164 (79.88%), Postives = 151/164 (92.07%), Query Frame = -3 Query: 285 DLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDYE 776 D+SVTDIACAALNGIKMGDKTLTVRRANQG QP PEQESVLLHAQQQIALQR MLQPG++ +KV+CLT+VV+ DEL DD++Y++ILEDMR E KFG LVNV+IPRPNPNG P+PG+GKVFLEYAD+DG++KAR G+NGRKFGGNQVVAVFYPENKF++GDYE Sbjct: 391 DVSVTDIACAALNGIKMGDKTLTVRRANQGTTQPNPEQESVLLHAQQQIALQRFMLQPGALATKVLCLTEVVTVDELNDDDDYQDILEDMRTECEKFGALVNVVIPRPNPNGVPTPGLGKVFLEYADVDGSSKARQGLNGRKFGGNQVVAVFYPENKFSEGDYE 554
BLAST of CX676536 vs. ExPASy Swiss-Prot
Match: U2A2A_ARATH (Splicing factor U2af large subunit A OS=Arabidopsis thaliana GN=U2AF65A PE=2 SV=2) HSP 1 Score: 270.396 bits (690), Expect = 7.763e-72 Identity = 130/163 (79.75%), Postives = 147/163 (90.18%), Query Frame = -3 Query: 288 DLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDY 776 DLSVTDIACAALNGIKMGDKTLTVRRANQG KPEQE+VLLHAQQQIA QR+MLQPG+V + VVCLTQVV+ DEL+DDEEY +I+EDMRQEGGKFG L NV+IPRP+PNGEP G+GKVFL+YAD DG+T+AR GMNGRKFGGN+VVAV+YPE+KF QGDY Sbjct: 409 DLSVTDIACAALNGIKMGDKTLTVRRANQGTMLQKPEQENVLLHAQQQIAFQRVMLQPGAVATTVVCLTQVVTEDELRDDEEYGDIMEDMRQEGGKFGALTNVVIPRPSPNGEPVAGLGKVFLKYADTDGSTRARFGMNGRKFGGNEVVAVYYPEDKFEQGDY 571
BLAST of CX676536 vs. ExPASy Swiss-Prot
Match: U2A2B_WHEAT (Splicing factor U2af large subunit B OS=Triticum aestivum GN=U2AF65B PE=2 SV=1) HSP 1 Score: 266.544 bits (680), Expect = 1.121e-70 Identity = 126/164 (76.83%), Postives = 149/164 (90.85%), Query Frame = -3 Query: 285 DLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDYE 776 DL+VTDIACAALNGIKMGDKTLTVRRANQG+ QP+PEQE++LL AQQQ+ LQ+L+ Q G++P+KVVCLTQVV+ADELKDDEEYE+I+EDMR E GK+G LV V+IPRP+P+GEP GVGKVFLEYAD+DG+TKA+T M+GRKFGGN VVAVFYPENKFA DY+ Sbjct: 377 DLNVTDIACAALNGIKMGDKTLTVRRANQGSAQPRPEQENILLQAQQQVQLQKLVYQVGALPTKVVCLTQVVTADELKDDEEYEDIMEDMRLEAGKYGNLVKVVIPRPHPSGEPVSGVGKVFLEYADVDGSTKAKTAMHGRKFGGNPVVAVFYPENKFADEDYD 540
BLAST of CX676536 vs. ExPASy Swiss-Prot
Match: U2A2B_ORYSJ (Splicing factor U2af large subunit B OS=Oryza sativa subsp. japonica GN=U2AF65B PE=2 SV=2) HSP 1 Score: 265.774 bits (678), Expect = 1.912e-70 Identity = 126/164 (76.83%), Postives = 148/164 (90.24%), Query Frame = -3 Query: 285 DLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDYE 776 DL+VTDIACAALNGIKMGDKTLTVRRANQGA QP+PEQES+LL AQQQ+ LQ+L+ Q G++P+KVVCLTQVVSADELKDDEEYE+I+EDMR E GK+G L+ V+IPRP+P+G P GVGKVFLEYAD+DGATKA+T M+GRKFGGN VVAVFYPENKF+ +Y+ Sbjct: 384 DLNVTDIACAALNGIKMGDKTLTVRRANQGAAQPRPEQESILLQAQQQVQLQKLVYQVGALPTKVVCLTQVVSADELKDDEEYEDIMEDMRLEAGKYGNLIKVVIPRPDPSGLPVAGVGKVFLEYADVDGATKAKTAMHGRKFGGNPVVAVFYPENKFSSAEYD 547
BLAST of CX676536 vs. ExPASy Swiss-Prot
Match: U2A2A_ORYSJ (Splicing factor U2af large subunit A OS=Oryza sativa subsp. japonica GN=U2AF65A PE=2 SV=2) HSP 1 Score: 252.292 bits (643), Expect = 2.188e-66 Identity = 119/167 (71.26%), Postives = 148/167 (88.62%), Query Frame = -3 Query: 282 DLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPG--SVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDYEG 776 DL+VTDIACAALNGIKMGDKTLTVRRANQGA+QP+PEQES+LLH QQQ +Q+LM Q G ++P+KVVCLTQVVS DEL+DDEEYE+I++DMR+EG ++G LV V+IPRP+P+G P GVG+VFLE+AD++ +TKA+ GM+GRKF NQVVAVFYPE+KFA+G Y+G Sbjct: 408 DLNVTDIACAALNGIKMGDKTLTVRRANQGASQPRPEQESMLLHVQQQAQMQKLMFQVGGGALPTKVVCLTQVVSPDELRDDEEYEDIVQDMREEGCRYGNLVKVVIPRPDPSGAPVAGVGRVFLEFADVESSTKAKNGMHGRKFANNQVVAVFYPEDKFAEGQYDG 574
BLAST of CX676536 vs. ExPASy Swiss-Prot
Match: U2A2A_WHEAT (Splicing factor U2af large subunit A OS=Triticum aestivum GN=U2AF65A PE=2 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 7.351e-30 Identity = 69/113 (61.06%), Postives = 91/113 (80.53%), Query Frame = -3 Query: 450 DLSVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESVLLHAQQQIALQRLMLQPG-SVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKF---GTLVNVIIPRPN 776 D +VTDIACAALNGI++GD+TLTVRRANQGA +P+PEQE++LL AQQ+ ++RL+ + G ++ +KVVCLTQVVSAD+L+DDEEY +ILEDM EG K+ T+ I RP+ Sbjct: 442 DGTVTDIACAALNGIQLGDRTLTVRRANQGA-EPRPEQENILLQAQQEAQMKRLVYEVGRTLTTKVVCLTQVVSADDLRDDEEYNDILEDMTLEGHKYVPHSTIAESFIIRPH 553
BLAST of CX676536 vs. ExPASy Swiss-Prot
Match: U2AF2_HUMAN (Splicing factor U2AF 65 kDa subunit OS=Homo sapiens GN=U2AF2 PE=1 SV=4) HSP 1 Score: 115.931 bits (289), Expect = 2.447e-25 Identity = 66/167 (39.52%), Postives = 99/167 (59.28%), Query Frame = -3 Query: 288 DLSVTDIACAALNGIKMGDKTLTVRRANQGA-NQPKPEQESVLLHAQQQIALQRLM---LQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDY 776 D++VTD A A LNG+++GDK L V+RA+ GA N S + + + LM +Q G P++V+CL +V +EL DDEEYEEI+ED+R E K+G + ++ IPRP +G PG GK+F+E+ + KA G+ GRKF VV + + + + D+ Sbjct: 309 DINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLVSPPSTINQTPVTLQVPGLMSSQVQMGGHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRP-VDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHRRDF 474
BLAST of CX676536 vs. ExPASy Swiss-Prot
Match: U2AF2_MOUSE (Splicing factor U2AF 65 kDa subunit OS=Mus musculus GN=U2af2 PE=1 SV=3) HSP 1 Score: 115.546 bits (288), Expect = 3.196e-25 Identity = 66/167 (39.52%), Postives = 99/167 (59.28%), Query Frame = -3 Query: 288 DLSVTDIACAALNGIKMGDKTLTVRRANQGA-NQPKPEQESVLLHAQQQIALQRLM---LQPGSVPSKVVCLTQVVSADELKDDEEYEEILEDMRQEGGKFGTLVNVIIPRPNPNGEPSPGVGKVFLEYADIDGATKARTGMNGRKFGGNQVVAVFYPENKFAQGDY 776 D++VTD A A LNG+++GDK L V+RA+ GA N S + + + LM +Q G P++V+CL +V +EL DDEEYEEI+ED+R E K+G + ++ IPRP +G PG GK+F+E+ + KA G+ GRKF VV + + + + D+ Sbjct: 309 DINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLVSLPSTINQTPVTLQVPGLMSSQVQMGGHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRP-VDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHRRDF 474 The following BLAST results are available for this feature:
BLAST of CX676536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 18
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Sequences
The
following sequences are available for this feature:
EST sequence >CX676536 ID=CX676536; Name=CX676536; organism=Citrus sinensis; type=EST; length=778bpback to top |