CX676529

Overview
NameCX676529
Unique NameCX676529
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length766
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX676529 vs. ExPASy Swiss-Prot
Match: SKI35_ARATH (F-box/ankyrin repeat protein SKIP35 OS=Arabidopsis thaliana GN=SKIP35 PE=1 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 2.103e-53
Identity = 111/168 (66.07%), Postives = 128/168 (76.19%), Query Frame = -2 
Query:  208 EGSEGSNVVFSREAPLISKESR-ISSG--CSCSAKNLKSRRIIATDSDFATEKIGHEKKLSKSERVELGKMFQSAMSSHDWELAESLILLADPHTLNDALCITLDSIWFLRTQQELHGVTGLIKKIIANGAYDFTRAALRTSFLASCVSACQSRTMSLQDTVTVMAQR 702
            EG EGS VVFSREAPLI K+S   +SG  C CSAK L  +     D     E I  +KKL++ ER+ELG++FQ A++S DWELAE LI LADP TLND LC+ LDS+WFL T+ E  G+TGLIKKII +GA+DFTRA LRTSFLASCVSACQSRTMSL DTVTVMAQR
Sbjct:   38 EGGEGSKVVFSREAPLIGKDSAGTNSGECCGCSAKKLNFK---GDDDLVEKENIEQQKKLNRQERIELGRLFQGAVTSLDWELAERLIQLADPQTLNDLLCVGLDSVWFLSTKPEFQGITGLIKKIICHGAHDFTRATLRTSFLASCVSACQSRTMSLSDTVTVMAQR 202
The following BLAST results are available for this feature:
BLAST of CX676529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SKI35_ARATH2.103e-5366.07F-box/ankyrin repeat protein SKIP35 OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_70E01_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-70E01-I2-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676529 ID=CX676529; Name=CX676529; organism=Citrus sinensis; type=EST; length=766bp
TTTTTCTCCAAATGCATAGACCCATCAAACCAAACAACAGCCTGGTTTCT
TTTATAGATTAATTAAGCAAATATACGTGCATCAAGCAGGCCCTCTTGTT
CAAAGAGTCCATTTAAAAATTCTGATGAATTCCACCGAACAAAAAGAAAA
GAGCAGAGGAAAAAAAACTATTCTTCCATCTATTACTAAAAAGTATGAAC
TTGATTACCTCTGGGCCATAACAGTTACTGTGTCTTGAAGACTCATTGTT
CTGCTCTGGCAAGCTGAAACACATGAGGCAAGAAATGAAGTCCTGAGGGC
TGCTCTTGTAAAGTCATAAGCACCATTAGCAATTATCTTCTTAATCAATC
CTGTCACTCCATGAAGCTCTTGCTGTGTCCTCAAGAACCAAATGGAGTCC
AGCGTAATGCATAATGCATCATTAAGGGTATGTGGATCTGCCAATAAAAT
CAGACTCTCCGCAAGTTCCCAATCATGGGAACTCATCGCACTTTGAAACA
TCTTGCCCAGCTCAACCCTCTCTGATTTACTGAGTTTTTTTTCATGCCCA
ATTTTCTCCGTAGCAAAATCAGAATCTGTTGCAATTATCCTCCTTGATTT
CAGATTCTTTGCACTACAACTACAACCACTGGATATTCTTGACTCTTTAC
TAATCAGGGGTGCTTCTCTGGAAAACACAACATTACTTCCCTCGCTTCCT
TCCGATGTAAAACCATGAACTTCATTCGCTGGAGTTCCAGTCTCATTCTC
ATCAGCTTCCATTTCA
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