CX676528

Overview
NameCX676528
Unique NameCX676528
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX676528 vs. ExPASy Swiss-Prot
Match: SKI35_ARATH (F-box/ankyrin repeat protein SKIP35 OS=Arabidopsis thaliana GN=SKIP35 PE=1 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 2.239e-56
Identity = 122/206 (59.22%), Postives = 146/206 (70.87%), Query Frame = 1 
Query:   73 DNMYLEDGIDHEEPFCAEMEADENETGTPANEVHGFTSEGSEGSNVVFSREAPLISKESR-ISSG--CSCSAKNLKSRRIIATDSDFATEKIGHEKKLSKSERVELGKMFQSAMSSHDWELAESLILLADPHTLNDALCITLDSIWFLRTQQELHGVTGLIKKIIANGAYDFTRAALRTSFLASCVSACQSRTMSLQDTVTVMAQR 681
            D + L D +  +EPFC+EM+    ET   + +      EG EGS VVFSREAPLI K+S   +SG  C CSAK L  +     D     E I  +KKL++ ER+ELG++FQ A++S DWELAE LI LADP TLND LC+ LDS+WFL T+ E  G+TGLIKKII +GA+DFTRA LRTSFLASCVSACQSRTMSL DTVTVMAQR
Sbjct:    8 DTINLSDQMYPDEPFCSEMKT---ETIASSQKF-----EGGEGSKVVFSREAPLIGKDSAGTNSGECCGCSAKKLNFK---GDDDLVEKENIEQQKKLNRQERIELGRLFQGAVTSLDWELAERLIQLADPQTLNDLLCVGLDSVWFLSTKPEFQGITGLIKKIICHGAHDFTRATLRTSFLASCVSACQSRTMSLSDTVTVMAQR 202
The following BLAST results are available for this feature:
BLAST of CX676528 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SKI35_ARATH2.239e-5659.22F-box/ankyrin repeat protein SKIP35 OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_70E01_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-70E01-I2-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676528 ID=CX676528; Name=CX676528; organism=Citrus sinensis; type=EST; length=814bp
AGATCTTGGAGGATTGGCAGGGTTGTGTAGAGGTTAAGAATGGTAAAGGA
GAGATTTTTCGTCTCGAAGAACGATAATATGTATTTGGAGGATGGGATTG
ATCATGAAGAACCCTTTTGTGCTGAAATGGAAGCTGATGAGAATGAGACT
GGAACTCCAGCGAATGAAGTTCATGGTTTTACATCGGAAGGAAGCGAGGG
AAGTAATGTTGTGTTTTCCAGAGAAGCACCCCTGATTAGTAAAGAGTCAA
GAATATCCAGTGGTTGTAGTTGTAGTGCAAAGAATCTGAAATCAAGGAGG
ATAATTGCAACAGATTCTGATTTTGCTACGGAGAAAATTGGGCATGAAAA
AAAACTCAGTAAATCAGAGAGGGTTGAGCTGGGCAAGATGTTTCAAAGTG
CGATGAGTTCCCATGATTGGGAACTTGCGGAGAGTCTGATTTTATTGGCA
GATCCACATACCCTTAATGATGCATTATGCATTACGCTGGACTCCATTTG
GTTCTTGAGGACACAGCAAGAGCTTCATGGAGTGACAGGATTGATTAAGA
AGATAATTGCTAATGGTGCTTATGACTTTACAAGAGCAGCCCTCAGGACT
TCATTTCTTGCCTCATGTGTTTCAGCTTGCCAGAGCAGAACAATGAGTCT
TCAAGACACAGTAACTGTTATGGCCCAGAGGTAATCAAGTTCATACTTTT
TAGTAATAGATGGAAGAATAGTTTTTTTTCCTCTGCTCTTTTCTTTTTGT
TCGGTGGAATTCATCAGAATTTTTAAATGGACTCTTTGAACAAGAGGGCC
TGCTTGATGCACGT
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