CX676525

Overview
NameCX676525
Unique NameCX676525
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length813
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676525 vs. ExPASy Swiss-Prot
Match: SAR1A_ARATH (GTP-binding protein SAR1A OS=Arabidopsis thaliana GN=SAR1A PE=2 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 1.096e-79
Identity = 151/193 (78.24%), Postives = 159/193 (82.38%), Query Frame = -2
Query:  204 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDE----HQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKRXXXXXXXXXXXANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLMDSSVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 770
            MF++DWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDE    HQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVW                  KERFAESK+           A+VPFLILGNKIDIPYAASEDELRYHLGL+NFTTGKGKVNL DS+VRPLEVFMCSIVRKMGYG+GFKW+SQYIK
Sbjct:    1 MFMIDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDESLASVPFLILGNKIDIPYAASEDELRYHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFKWVSQYIK 193          
BLAST of CX676525 vs. ExPASy Swiss-Prot
Match: SAR1B_ARATH (GTP-binding protein SAR1B OS=Arabidopsis thaliana GN=SAR1B PE=2 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 5.441e-79
Identity = 152/192 (79.17%), Postives = 154/192 (80.21%), Query Frame = -2
Query:  207 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDE----HQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKRXXXXXXXXXXXANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLMDSSVRPLEVFMCSIVRKMGYGDGFKWLSQYI 770
            MFL DWFYG+LASLGLWQKEAKILFLGLDNAGKTTLLHMLKDE    HQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVW                  KERFAESKR           A VPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKV L DS VRPLEVFMCSIVRKMGYG+GFKWLSQYI
Sbjct:    1 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKRELDALLSDEALATVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVTLGDSGVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192          
BLAST of CX676525 vs. ExPASy Swiss-Prot
Match: SAR1A_BRACM (GTP-binding protein SAR1A OS=Brassica campestris GN=SAR1A PE=2 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 1.212e-78
Identity = 150/193 (77.72%), Postives = 158/193 (81.87%), Query Frame = -2
Query:  204 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDE----HQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKRXXXXXXXXXXXANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLMDSSVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 770
            MF++DWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDE    HQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVW                  KERFAESK+           A VPFLILGNKIDIPYAASEDELRYHLGL+NFTTGKGKV+L+ S+VRPLEVFMCSIVRKMGYG+GFKWLSQYIK
Sbjct:    1 MFVIDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRYHLGLSNFTTGKGKVDLVGSNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193          
BLAST of CX676525 vs. ExPASy Swiss-Prot
Match: SAR1B_BRACM (GTP-binding protein SAR1B OS=Brassica campestris GN=SAR1B PE=2 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 1.254e-75
Identity = 148/194 (76.29%), Postives = 152/194 (78.35%), Query Frame = -2
Query:  207 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDE----HQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKRXXXXXXXXXXXANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLM--DSSVRPLEVFMCSIVRKMGYGDGFKWLSQYI 770
            MFL DWFYG+LASLGLWQKEAKILFLGLDNAGKTTLLHMLKDE    HQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVW                  KERF+ESK+           A VPFLILGNKID PYAASEDELRYHLGLTNFTTGKGKV     DS VRPLEVFMCSIVRKMGYG+GFKWLSQYI
Sbjct:    1 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFSESKKELDALLSDDALATVPFLILGNKIDNPYAASEDELRYHLGLTNFTTGKGKVTTAGGDSGVRPLEVFMCSIVRKMGYGEGFKWLSQYI 194          
BLAST of CX676525 vs. ExPASy Swiss-Prot
Match: SAR2_SOLLC (GTP-binding protein SAR2 OS=Solanum lycopersicum GN=SAR2 PE=2 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 8.131e-75
Identity = 140/193 (72.54%), Postives = 152/193 (78.76%), Query Frame = -2
Query:  204 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDE----HQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKRXXXXXXXXXXXANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLMDSSVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 770
            MFL+DWFYGVLASLGLWQK+AKILFLGLDNAGKTTLLHMLKDE    HQPTQ+PTSEELSIG IKFKAFDLGGHQIARRVW                  +ERF E+K+            NVPFLILGNKIDIPYAASEDELRYHLGLT  TTGKG +NL  ++VRP+EVFMCSIVRKMGYG+GFKW+SQYIK
Sbjct:    1 MFLVDWFYGVLASLGLWQKDAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGNIKFKAFDLGGHQIARRVWRDYYAKVDAVVYLVDANDRERFPEAKKELDGLLSDESLTNVPFLILGNKIDIPYAASEDELRYHLGLTGVTTGKGNINLAGTNVRPIEVFMCSIVRKMGYGEGFKWMSQYIK 193          
BLAST of CX676525 vs. ExPASy Swiss-Prot
Match: SAR1_TOBAC (GTP-binding protein SAR1 OS=Nicotiana tabacum GN=SAR1 PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 5.295e-58
Identity = 122/198 (61.62%), Postives = 139/198 (70.20%), Query Frame = -2
Query:  204 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDE----HQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKRXXXXXXXXXXXANVPFLILGN---KIDIPYAA-SEDELRYHLGLTNFT-TGKGKVNLMDSSVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 770
            MFL+DWFYG+LA+LGLWQKEAKILFLGLDNAGKTTLLHMLKDE    HQPTQ+PTSEELSIGKIKFKAFDLGGHQIARRVW                  KERFAESK+               FL L N   +I+ P     +   RYH+G    +   +GKVNL DS+VRP+EVFMCSIVR+MGYG+GF+W+SQYIK
Sbjct:    1 MFLVDWFYGILATLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDSFDKERFAESKKELDALLSGWSSLAHCFLFLDNWVTRIEHPICCLRKMNWRYHMGANGASPLARGKVNLADSNVRPVEVFMCSIVRQMGYGEGFRWMSQYIK 198          
BLAST of CX676525 vs. ExPASy Swiss-Prot
Match: SAR1_USTMA (Small COPII coat GTPase SAR1 OS=Ustilago maydis GN=SAR1 PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 6.698e-53
Identity = 107/192 (55.73%), Postives = 133/192 (69.27%), Query Frame = -2
Query:  207 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDEH----QPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKRXXXXXXXXXXXANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLMDSSVRPLEVFMCSIVRKMGYGDGFKWLSQYI 770
            MF+++WF+ +LA LGL  K AKILFLGLDNAGKTTLLHMLK++     QPT HPTSEEL+IG++KF  +DLGGHQ ARR+W                   ERFAE++            ++VPFLILGNKID P A SE+ELR  +GL   TTGKGKV L D  +RP+E+FMCS+V + GYG+GF+W+SQYI
Sbjct:    1 MFIINWFWDILAQLGLAHKNAKILFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGQVKFTTYDLGGHQQARRLWKDYFPEVDGIVFLVDTQDHERFAEARAELDALLSIEELSSVPFLILGNKIDAPGAVSEEELRQAIGLYQ-TTGKGKVPLKD--IRPIEIFMCSVVMRQGYGEGFRWISQYI 189          
BLAST of CX676525 vs. ExPASy Swiss-Prot
Match: SAR1_NEOFI (Small COPII coat GTPase sar1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=sar1 PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.143e-52
Identity = 111/192 (57.81%), Postives = 129/192 (67.19%), Query Frame = -2
Query:  207 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDEH----QPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKRXXXXXXXXXXXANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLMDSSVRPLEVFMCSIVRKMGYGDGFKWLSQYI 770
            M++++WFY VLASLGL  K AK+LFLGLDNAGKTTLLHMLK++     QPT HPTSEEL+IG  +F  FDLGGHQ ARR+W                   ERF ESK            A VPFLILGNKID P A SEDELR+ LGL   TTGKGKV L    +RP+EVFMCS+V + GYG+G +WLSQY+
Sbjct:    1 MWIINWFYDVLASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVATLQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDELRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCSVVMRQGYGEGIRWLSQYV 189          
BLAST of CX676525 vs. ExPASy Swiss-Prot
Match: SAR1_ASPOR (Small COPII coat GTPase sar1 OS=Aspergillus oryzae GN=sar1 PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.143e-52
Identity = 111/192 (57.81%), Postives = 129/192 (67.19%), Query Frame = -2
Query:  207 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDEH----QPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKRXXXXXXXXXXXANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLMDSSVRPLEVFMCSIVRKMGYGDGFKWLSQYI 770
            M++++WFY VLASLGL  K AK+LFLGLDNAGKTTLLHMLK++     QPT HPTSEEL+IG  +F  FDLGGHQ ARR+W                   ERF ESK            A VPFLILGNKID P A SEDELR+ LGL   TTGKGKV L    +RP+EVFMCS+V + GYG+G +WLSQY+
Sbjct:    1 MWIINWFYDVLASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVAVLQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDELRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCSVVMRQGYGEGIRWLSQYV 189          
BLAST of CX676525 vs. ExPASy Swiss-Prot
Match: SAR1_ASPCL (Small COPII coat GTPase sar1 OS=Aspergillus clavatus GN=sar1 PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.143e-52
Identity = 110/192 (57.29%), Postives = 129/192 (67.19%), Query Frame = -2
Query:  207 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDEH----QPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKRXXXXXXXXXXXANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLMDSSVRPLEVFMCSIVRKMGYGDGFKWLSQYI 770
            M++++WFY VLASLGL  K AK+LFLGLDNAGKTTLLHMLK++     QPT HPTSEEL+IG  +F  FDLGGHQ ARR+W                   ERF ESK            + VPFLILGNKID P A SEDELR+ LGL   TTGKGKV L    +RP+EVFMCS+V + GYG+G +WLSQY+
Sbjct:    1 MWIINWFYDVLASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVATLQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELSKVPFLILGNKIDHPDAVSEDELRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCSVVMRQGYGEGIRWLSQYV 189          
The following BLAST results are available for this feature:
BLAST of CX676525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
SAR1A_ARATH1.096e-7978.24GTP-binding protein SAR1A OS=Arabidopsis thaliana ... [more]
SAR1B_ARATH5.441e-7979.17GTP-binding protein SAR1B OS=Arabidopsis thaliana ... [more]
SAR1A_BRACM1.212e-7877.72GTP-binding protein SAR1A OS=Brassica campestris G... [more]
SAR1B_BRACM1.254e-7576.29GTP-binding protein SAR1B OS=Brassica campestris G... [more]
SAR2_SOLLC8.131e-7572.54GTP-binding protein SAR2 OS=Solanum lycopersicum G... [more]
SAR1_TOBAC5.295e-5861.62GTP-binding protein SAR1 OS=Nicotiana tabacum GN=S... [more]
SAR1_USTMA6.698e-5355.73Small COPII coat GTPase SAR1 OS=Ustilago maydis GN... [more]
SAR1_NEOFI1.143e-5257.81Small COPII coat GTPase sar1 OS=Neosartorya fische... [more]
SAR1_ASPOR1.143e-5257.81Small COPII coat GTPase sar1 OS=Aspergillus oryzae... [more]
SAR1_ASPCL1.143e-5257.29Small COPII coat GTPase sar1 OS=Aspergillus clavat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_70D11_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-70D11-G22-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676525 ID=CX676525; Name=CX676525; organism=Citrus sinensis; type=EST; length=813bp
TTTTTTTTTTTTTTTTTGAAAGAAAATAAAAACAAATTTCACATTGATCA
ATTGGTGCAACAATTGTCGGGTCTTTTCATAGCAGTCAAATAAACATCAA
AAATTTGGTTTTTCAATTAACTGTAGTCAGACACAGCAAAAAATGACGGG
AAAAATATCCCAGAAGAATGAATACATATGACCATATGATGTCATCAACT
CTACTTGATATACTGAGAGAGCCACTTGAAGCCATCGCCATATCCCATCT
TGCGCACAATACTACACATGAAGACCTCGAGCGGTCGAACGCTGGAATCC
ATTAGATTCACCTTCCCCTTGCCGGTTGTGAAATTGGTTAGTCCAAGATG
GTAACGAAGCTCGTCTTCTGAAGCTGCATACGGAATGTCAATCTTATTGC
CTAAAATGAGAAAGGGAACATTGGCCAGGGCTTCATCTGAAAGAAGGGCA
TCCAGCTCTCTTTTCGATTCTGCAAATCTCTCCTTGTCGTAAGCATCCAC
CAAGTACACCACCGCATCCACCTTAGCATAATAATCTTTCCAAACACGGC
GAGCGATCTGGTGACCACCCAAATCAAAAGCTTTGAACTTGATTTTCCCA
ATGCTCAATTCCTCTGATGTGGGGTGCTGTGTTGGCTGGTGCTCGTCTTT
TAACATATGAAGAAGGGTAGTTTTGCCGGCGTTATCGAGGCCTAAAAAGA
GAATCTTGGCTTCTTTTTGCCATAACCCAAGAGAAGCAAGAACGCCATAG
AACCAGTCTAAGAGAAACATTGCTTTCTTTCTTTTGTTTGTTTGTCTAAT
GAGATCTGCTGCG
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