CX676517

Overview
NameCX676517
Unique NameCX676517
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676517 vs. ExPASy Swiss-Prot
Match: PRU1_PRUAR (Major allergen Pru ar 1 OS=Prunus armeniaca PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.020e-28
Identity = 65/140 (46.43%), Postives = 86/140 (61.43%), Query Frame = -1
Query:  192 KLFVLQFDXXXXXXXXXXXXXVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVFYESKVVGTPDGGSKSPVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKVLEAYALANPNA 611
            K F+L  D              E++ GDGG G+IKK  F EG+ + Y KHRVD +DK+N  Y+YT IEG  DA    I+++ Y+ K+V +PDGGS       ++ K   EIKEEQVK G EK  G+FK++EAY LANP+A
Sbjct:   21 KAFILDADNLIPKVAPTAVKGTEILEGDGGVGTIKKVTFGEGSQYAYVKHRVDGIDKDNLSYSYTLIEG--DALSDVIENIAYDIKLVASPDGGSIVKTTSHYHTKGDVEIKEEQVKAGKEKAAGLFKLVEAYLLANPDA 158          
BLAST of CX676517 vs. ExPASy Swiss-Prot
Match: PRU1_PRUAV (Major allergen Pru av 1 OS=Prunus avium GN=PRUA1 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.213e-26
Identity = 60/140 (42.86%), Postives = 83/140 (59.29%), Query Frame = -1
Query:  192 KLFVLQFDXXXXXXXXXXXXXVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVFYESKVVGTPDGGSKSPVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKVLEAYALANPNA 611
            K FVL  D              E++ GDGGPG+IKK  F EG+ + Y KH++D++DKEN  Y+YT I  EGDA   T++ + YE+K+V +P GGS       ++ K   EIKEE VK G EK   +FK++E Y   +P+A
Sbjct:   21 KAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGEGSQYGYVKHKIDSIDKENYSYSYTLI--EGDALGDTLEKISYETKLVASPSGGSIIKSTSHYHTKGNVEIKEEHVKAGKEKASNLFKLIETYLKGHPDA 158          
BLAST of CX676517 vs. ExPASy Swiss-Prot
Match: PR1_MEDSA (Class-10 pathogenesis-related protein 1 OS=Medicago sativa GN=MSPR10-1 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.338e-23
Identity = 51/117 (43.59%), Postives = 76/117 (64.96%), Query Frame = -1
Query:  195 ELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVFYESKVVGTPDGGSKSPVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKVLEAYALANPN 545
            E++ G+GG G+IKK  FVEG + KY  H+VD +D  N  YNY+ + G G  +  T++ + +ESK+   PDGGS + + +K++ K  A   EE++KGG  +  G+FK LE Y LANP+
Sbjct:   42 EIVEGNGGAGTIKKLTFVEGGETKYDLHKVDLVDDVNFAYNYSIVGGGGLPD--TVEKISFESKLSAGPDGGSTAKLTVKYFTKGDAAPSEEEIKGGKARGDGLFKALEGYVLANPD 156          
BLAST of CX676517 vs. ExPASy Swiss-Prot
Match: MAL12_MALDO (Major allergen Mal d 1 OS=Malus domestica PE=1 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 4.360e-23
Identity = 59/140 (42.14%), Postives = 82/140 (58.57%), Query Frame = -1
Query:  192 KLFVLQFDXXXXXXXXXXXXXVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVFYESKVVGTPDGGSKSPVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKVLEAYALANPNA 611
            K FVL  D              E++ GDGGPG+IKK  F EG+ + Y KH++D++D+ N  Y YT I  EGDA   TI+ V YE+K+V +   GS    +  ++ K   EIKEE VK G EK  G+FK++E+Y   +P+A
Sbjct:   21 KAFVLDADNLIPKIAPQAIKHAEILEGDGGPGTIKKITFGEGSQYGYVKHKIDSVDEANYSYAYTLI--EGDALTDTIEKVSYETKLVAS-GSGSIIKSISHYHTKGDVEIKEEHVKAGKEKAHGLFKLIESYLKGHPDA 157          
BLAST of CX676517 vs. ExPASy Swiss-Prot
Match: PYRC1_PYRCO (Major allergen Pyr c 1 OS=Pyrus communis GN=PYRC1 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.826e-22
Identity = 58/140 (41.43%), Postives = 82/140 (58.57%), Query Frame = -1
Query:  192 KLFVLQFDXXXXXXXXXXXXXVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVFYESKVVGTPDGGSKSPVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKVLEAYALANPNA 611
            K FVL  D              E++ G+GGPG+IKK  F EG+ + Y KHRVD++D+ +  Y YT I  EGDA   TI+ + YE+K+V +   GS    +  ++ K   EIKEE VK G EK  G+FK++E+Y   +P+A
Sbjct:   21 KAFVLDADNLIPKIAPQAIKHAEILEGNGGPGTIKKITFGEGSQYGYVKHRVDSIDEASYSYAYTLI--EGDALTDTIEKISYEAKLVAS-GSGSTIKSISHYHTKGDIEIKEEHVKAGKEKAHGLFKLIESYLKDHPDA 157          
BLAST of CX676517 vs. ExPASy Swiss-Prot
Match: MAL11_MALDO (Major allergen Mal d 1 OS=Malus domestica GN=MALD1 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 4.820e-22
Identity = 57/140 (40.71%), Postives = 82/140 (58.57%), Query Frame = -1
Query:  192 KLFVLQFDXXXXXXXXXXXXXVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVFYESKVVGTPDGGSKSPVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKVLEAYALANPNA 611
            K FVL  D              E++ G+GGPG+IKK  F EG+ + Y KHR+D++D+ +  Y+YT I  EGDA   TI+ + YE+K+V     GS    +  ++ K   EIKEE VK G EK  G+FK++E+Y   +P+A
Sbjct:   21 KAFVLDADNLIPKIAPQAIKQAEILEGNGGPGTIKKITFGEGSQYGYVKHRIDSIDEASYSYSYTLI--EGDALTDTIEKISYETKLVAC-GSGSTIKSISHYHTKGNIEIKEEHVKVGKEKAHGLFKLIESYLKDHPDA 157          
BLAST of CX676517 vs. ExPASy Swiss-Prot
Match: DRR4_PEA (Disease resistance response protein DRRG49-C OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.090e-21
Identity = 48/117 (41.03%), Postives = 75/117 (64.10%), Query Frame = -1
Query:  195 ELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVFYESKVVGTPDGGSKSPVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKVLEAYALANPN 545
            E++ G+GGPG+IKK  FVE  + KY  H+V+ +D  N   NY+ + G G  +  T++ + +E+K+   P+GGS + + +K+Y K  A   EE++K G  K +GIFK LE Y +ANP+
Sbjct:   42 EIVEGNGGPGTIKKLTFVEDGETKYVLHKVELVDDANWANNYSIVGGVGLPD--TVEKISFEAKLSAGPNGGSIAKLSVKYYTKGDAIPSEEEIKNGKAKGEGIFKALEGYCVANPD 156          
BLAST of CX676517 vs. ExPASy Swiss-Prot
Match: BEV1G_BETVE (Major pollen allergen Bet v 1-G OS=Betula verrucosa GN=BETV1G PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.551e-20
Identity = 58/142 (40.85%), Postives = 80/142 (56.34%), Query Frame = -1
Query:  192 KLFVLQFDXXXXXXXXXXXXXVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEG--EGDANIPTIDHVFYESKVVGTPDGGSKSPVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKVLEAYALANPNA 611
            K F+L+ D             VE I G+GGPG+IKK NF EG  +KY K RVD +D  N  YNY+ IEG   GD    T++ +  E K+V TPDGG    +  K++ K   E+K EQVK   E  + + + +E+Y LA+ +A
Sbjct:   21 KAFILEGDNLIPKVAPQAISSVENIEGNGGPGTIKKINFPEGFPFKYVKDRVDEVDHTNFKYNYSVIEGGPVGD----TLEKISNEIKIVATPDGGCVLKISNKYHTKGNHEVKAEQVKASKEMGETLLRAVESYLLAHSDA 158          
BLAST of CX676517 vs. ExPASy Swiss-Prot
Match: BEV1L_BETVE (Major pollen allergen Bet v 1-L OS=Betula verrucosa GN=BETV1L PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 2.645e-20
Identity = 58/142 (40.85%), Postives = 79/142 (55.63%), Query Frame = -1
Query:  192 KLFVLQFDXXXXXXXXXXXXXVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEG--EGDANIPTIDHVFYESKVVGTPDGGSKSPVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKVLEAYALANPNA 611
            K F+L  D             VE I G+GGPG+IKK NF EG  +KY K RVD +D  N  YNY+ IEG   GD    T++ +  E K+V TPDGG    +  K++ K   E+K EQVK   E  + + + +E+Y LA+ +A
Sbjct:   21 KAFILDGDKLVPKVAPQAISSVENIEGNGGPGTIKKINFPEGFPFKYVKDRVDEVDHTNFKYNYSVIEGGPVGD----TLEKISNEIKIVATPDGGCVLKISNKYHTKGNHEVKAEQVKASKEMGETLLRAVESYLLAHSDA 158          
BLAST of CX676517 vs. ExPASy Swiss-Prot
Match: BEV1D_BETVE (Major pollen allergen Bet v 1-D/H OS=Betula verrucosa GN=BETV1D PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 2.645e-20
Identity = 58/142 (40.85%), Postives = 79/142 (55.63%), Query Frame = -1
Query:  192 KLFVLQFDXXXXXXXXXXXXXVELISGDGGPGSIKKFNFVEGADWKYFKHRVDALDKENKIYNYTAIEG--EGDANIPTIDHVFYESKVVGTPDGGSKSPVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKVLEAYALANPNA 611
            K F+L  D             VE I G+GGPG+IKK NF EG  +KY K RVD +D  N  YNY+ IEG   GD    T++ +  E K+V TPDGG    +  K++ K   E+K EQVK   E  + + + +E+Y LA+ +A
Sbjct:   21 KAFILDGDNLVPKVAPQAISSVENIEGNGGPGTIKKINFPEGFPFKYVKDRVDEVDHTNFKYNYSVIEGGPVGD----TLEKISNEIKIVATPDGGCVLKISNKYHTKGNHEVKAEQVKASKEMGETLLRAVESYLLAHSDA 158          
The following BLAST results are available for this feature:
BLAST of CX676517 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
PRU1_PRUAR2.020e-2846.43Major allergen Pru ar 1 OS=Prunus armeniaca PE=1 S... [more]
PRU1_PRUAV4.213e-2642.86Major allergen Pru av 1 OS=Prunus avium GN=PRUA1 P... [more]
PR1_MEDSA3.338e-2343.59Class-10 pathogenesis-related protein 1 OS=Medicag... [more]
MAL12_MALDO4.360e-2342.14Major allergen Mal d 1 OS=Malus domestica PE=1 SV=... [more]
PYRC1_PYRCO2.826e-2241.43Major allergen Pyr c 1 OS=Pyrus communis GN=PYRC1 ... [more]
MAL11_MALDO4.820e-2240.71Major allergen Mal d 1 OS=Malus domestica GN=MALD1... [more]
DRR4_PEA9.090e-2141.03Disease resistance response protein DRRG49-C OS=Pi... [more]
BEV1G_BETVE1.551e-2040.85Major pollen allergen Bet v 1-G OS=Betula verrucos... [more]
BEV1L_BETVE2.645e-2040.85Major pollen allergen Bet v 1-L OS=Betula verrucos... [more]
BEV1D_BETVE2.645e-2040.85Major pollen allergen Bet v 1-D/H OS=Betula verruc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_70D06_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-70D06-G12-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676517 ID=CX676517; Name=CX676517; organism=Citrus sinensis; type=EST; length=611bp
TTTTTTTTTTTTTTTTTGAAAAAGGGAAAAGCAAACTCTTTTTTTTTTTT
ATTTAACCAAAAGCCAATTATATAAATTGGCATATTTGAAAACAAAAAAA
CACGACATACGGAAGCCATAAACATGATTATTCATAATGTTGCAACAAAG
GCGACCCAAGTGCGGGGAAATGTTGACGTAAAAACTTATACGGCATTGGG
GTTTGCCAAGGCATAGGCTTCCAAAACCTTAAAAATTCCCTTCTCCTTTT
CCAAGCCTCCCTTAACCTGCTCTTCCTTAATCTCGGCACCTGGTTTGGGA
TAAAACTTGATAACAACGGGGCTCTTGCTTCCTCCGTCAGGGGTGCCCAC
AACCTTACTCTCATAAAAAACATGATCAATAGTAGGGATGTTAGCATCAC
CCTCACCTTCAATTGCCGTGTAATTGTATATCTTGTTCTCTTTGTCCAAT
GCATCAACCCTATGCTTAAAGTACTTCCAATCAGCACCTTCAACAAAGTT
AAACTTCTTGATGCTTCCAGGGCCTCCATCCCCTGAAATCAATTCAACGT
TCTTTACAACCTGAAGCAGGACTTTGGGCAGAAGGGGGTCGAACTGAAGG
ACAAAAAGTTT
back to top