CN184058
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN184058 vs. ExPASy Swiss-Prot
Match: SWI3B_ARATH (SWI/SNF complex subunit SWI3B OS=Arabidopsis thaliana GN=SWI3B PE=1 SV=1) HSP 1 Score: 183.341 bits (464), Expect = 3.533e-46 Identity = 88/144 (61.11%), Postives = 116/144 (80.56%), Query Frame = 2 Query: 5 VRGNHRVGVSSSDFRRVEISEEARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKLPFGQEFICKESDSEDVDNKFFSINNPSDAVSESENVGATSPSKRMRLTPLADASNPIMAQAAFLSALAGVEIAEVA 436 VR N+RVG++SS+F+RVEISEE++ +W++KE L LLEA+MH+GDDW+KVA HV G++EKDC++ F+KLPFG++F+ KESDSED F I + SE + +SP+KR++LTPLADASNPIMAQAAFLSALAG +AE A Sbjct: 202 VRSNYRVGINSSEFKRVEISEESKPEWSDKEILLLLEAVMHYGDDWKKVASHVIGRTEKDCVSQFVKLPFGEQFV-KESDSEDGLEMFDQIKDSDIPESEGIDKDGSSPNKRIKLTPLADASNPIMAQAAFLSALAGTNVAEAA 344
BLAST of CN184058 vs. ExPASy Swiss-Prot
Match: SWI3A_ARATH (SWI/SNF complex subunit SWI3A OS=Arabidopsis thaliana GN=SWI3A PE=1 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 3.019e-13 Identity = 47/160 (29.38%), Postives = 80/160 (50.00%), Query Frame = 2 Query: 11 GNHRVGVSSSDFRRVEISEEARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKLPFGQ------------EFICKESDSEDVD------NKFFSINNPSDAVSESENVGATSPSKRMRLTPLADASNPIMAQAAFLSALAGVEIAEVA 436 GN+ ++ DF+ I A + WTE+E L LLE+++ GDDW ++Q VS KS DCI+ I+LPFG+ + ++ ++E V + + D V+E E P+KR R+ +++ + +M Q A +++ G +A A Sbjct: 206 GNYGENNTADDFKL--IGNSAAAVWTEEEILLLLESVLKHGDDWELISQSVSTKSRLDCISKLIELPFGEFLMGSASGRLNPSILTEDENTEQVQTDGQEHEETETREEKEDRVNEDE-----PPAKRKRVALISEGDSSLMKQVAAMASKVGPSVATAA 358
BLAST of CN184058 vs. ExPASy Swiss-Prot
Match: SWI3C_ARATH (SWI/SNF complex subunit SWI3C OS=Arabidopsis thaliana GN=SWI3C PE=1 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 2.556e-12 Identity = 47/152 (30.92%), Postives = 73/152 (48.03%), Query Frame = 2 Query: 11 GNHRVGVSSSDFRRVE----ISEEARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKLPFGQEFICK---------ESDSEDVDNKFFSINNPSDAVSESENVGATSPSKRMRLTPLADASNPIMAQAAFLSALAGVEIA 427 G VG S DF RV+ ++ +WT++ETL LLEA+ + ++W ++A HV KS+ CI HF++LP + E+ + D+K N SE G+ + K P + NP+MA AFL++ G +A Sbjct: 375 GRFVVGHSCLDFVRVDPMKFYGDQDGDNWTDQETLLLLEAVELYNENWVQIADHVGSKSKAQCILHFLRLPVEDGLLDNVEVSGVTNTENPTNGYDHKGTDSNGDLPGYSEQ---GSDTEIK----LPFVKSPNPVMALVAFLASAVGPRVA 519
BLAST of CN184058 vs. ExPASy Swiss-Prot
Match: MYBX_DICDI (Myb-like protein X OS=Dictyostelium discoideum GN=mybX PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 4.359e-12 Identity = 37/106 (34.91%), Postives = 59/106 (55.66%), Query Frame = 2 Query: 11 GNHRVGVSSSDFRRVEISEEARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSG-KSEKDCITHFIKLPFGQEFI-------------CKESDSEDVDNKFFSINNP 286 GN+ + SS F+R+E + WT+ ETL LLE I F D+W++++ ++ G K+ + C+THFI+LP EF+ KE DS + + + +NNP Sbjct: 906 GNYENFIQSSSFQRIEQHQPEEFGWTDIETLLLLEGIEIFRDNWQEISDYIGGSKTPEQCLTHFIRLPIEDEFLERKISSFPVGSLSKKEIDSNNPFSITYGVNNP 1011
BLAST of CN184058 vs. ExPASy Swiss-Prot
Match: SMRC1_MOUSE (SWI/SNF complex subunit SMARCC1 OS=Mus musculus GN=Smarcc1 PE=1 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 5.693e-12 Identity = 36/122 (29.51%), Postives = 60/122 (49.18%), Query Frame = 2 Query: 71 ARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKLPFGQEFICKESDSEDVDNKFFSINNPSDAVSESENVGATSPSKRMRLTPLADASNPIMAQAAFLSALAGVEIAEVA 436 A +WTE+ETL LLEA+ + DDW KV++HV +++ +CI HF++LP ++ EN A+ + P + + NP+M+ AFL+++ +A A Sbjct: 618 AGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYL--------------------------ENSDASLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVASAA 713
BLAST of CN184058 vs. ExPASy Swiss-Prot
Match: SMRC1_HUMAN (SWI/SNF complex subunit SMARCC1 OS=Homo sapiens GN=SMARCC1 PE=1 SV=3) HSP 1 Score: 69.707 bits (169), Expect = 5.693e-12 Identity = 36/122 (29.51%), Postives = 60/122 (49.18%), Query Frame = 2 Query: 71 ARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKLPFGQEFICKESDSEDVDNKFFSINNPSDAVSESENVGATSPSKRMRLTPLADASNPIMAQAAFLSALAGVEIAEVA 436 A +WTE+ETL LLEA+ + DDW KV++HV +++ +CI HF++LP ++ EN A+ + P + + NP+M+ AFL+++ +A A Sbjct: 619 AGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYL--------------------------ENSDASLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVASAA 714
BLAST of CN184058 vs. ExPASy Swiss-Prot
Match: SMRC2_MOUSE (SWI/SNF complex subunit SMARCC2 OS=Mus musculus GN=Smarcc2 PE=1 SV=2) HSP 1 Score: 68.1662 bits (165), Expect = 1.656e-11 Identity = 37/122 (30.33%), Postives = 61/122 (50.00%), Query Frame = 2 Query: 71 ARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKLPFGQEFICKESDSEDVDNKFFSINNPSDAVSESENVGATSPSKRMRLTPLADASNPIMAQAAFLSALAGVEIAEVA 436 A +WTE+ETL LLEA+ + DDW KV++HV +++ +CI HF++LP ++ DSE A+ + P + + NP+M+ AFL+++ +A A Sbjct: 597 ATREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYL---EDSE-----------------------ASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVASAA 692
BLAST of CN184058 vs. ExPASy Swiss-Prot
Match: SMRC2_HUMAN (SWI/SNF complex subunit SMARCC2 OS=Homo sapiens GN=SMARCC2 PE=1 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 1.656e-11 Identity = 37/122 (30.33%), Postives = 61/122 (50.00%), Query Frame = 2 Query: 71 ARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKLPFGQEFICKESDSEDVDNKFFSINNPSDAVSESENVGATSPSKRMRLTPLADASNPIMAQAAFLSALAGVEIAEVA 436 A +WTE+ETL LLEA+ + DDW KV++HV +++ +CI HF++LP ++ DSE A+ + P + + NP+M+ AFL+++ +A A Sbjct: 597 ATREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYL---EDSE-----------------------ASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVASAA 692
BLAST of CN184058 vs. ExPASy Swiss-Prot
Match: SWI3_YEAST (SWI/SNF complex subunit SWI3 OS=Saccharomyces cerevisiae GN=SWI3 PE=1 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 4.820e-11 Identity = 36/128 (28.12%), Postives = 62/128 (48.44%), Query Frame = 2 Query: 26 GVSSSDFRRVEISEEARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKLPFGQEFICKESDSEDVDNKFFSINNPSDAVSESENVGATSPSKRMRLTPLADASNPIMAQAAFLSAL 409 G +S ++V+I E+ +W++++ +LL+ I FG DW KVA++V KS + CI F++LP +F+ D + +N P K P + + NP+++ AFL L Sbjct: 508 GETSRPLKKVKILEQIDENWSKEDLQKLLKGIQEFGADWYKVAKNVGNKSPEQCILRFLQLPIEDKFLY------------------GDGNGKGDNDNGLGPLKYAPHLPFSKSENPVLSTIAFLVGL 617 The following BLAST results are available for this feature:
BLAST of CN184058 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 9
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CN184058 ID=CN184058; Name=CN184058; organism=Citrus sinensis; type=EST; length=436bpback to top |