CN184058

Overview
NameCN184058
Unique NameCN184058
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length436
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184058 vs. ExPASy Swiss-Prot
Match: SWI3B_ARATH (SWI/SNF complex subunit SWI3B OS=Arabidopsis thaliana GN=SWI3B PE=1 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 3.533e-46
Identity = 88/144 (61.11%), Postives = 116/144 (80.56%), Query Frame = 2
Query:    5 VRGNHRVGVSSSDFRRVEISEEARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKLPFGQEFICKESDSEDVDNKFFSINNPSDAVSESENVGATSPSKRMRLTPLADASNPIMAQAAFLSALAGVEIAEVA 436
            VR N+RVG++SS+F+RVEISEE++ +W++KE L LLEA+MH+GDDW+KVA HV G++EKDC++ F+KLPFG++F+ KESDSED    F  I +     SE  +   +SP+KR++LTPLADASNPIMAQAAFLSALAG  +AE A
Sbjct:  202 VRSNYRVGINSSEFKRVEISEESKPEWSDKEILLLLEAVMHYGDDWKKVASHVIGRTEKDCVSQFVKLPFGEQFV-KESDSEDGLEMFDQIKDSDIPESEGIDKDGSSPNKRIKLTPLADASNPIMAQAAFLSALAGTNVAEAA 344          
BLAST of CN184058 vs. ExPASy Swiss-Prot
Match: SWI3A_ARATH (SWI/SNF complex subunit SWI3A OS=Arabidopsis thaliana GN=SWI3A PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.019e-13
Identity = 47/160 (29.38%), Postives = 80/160 (50.00%), Query Frame = 2
Query:   11 GNHRVGVSSSDFRRVEISEEARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKLPFGQ------------EFICKESDSEDVD------NKFFSINNPSDAVSESENVGATSPSKRMRLTPLADASNPIMAQAAFLSALAGVEIAEVA 436
            GN+    ++ DF+   I   A + WTE+E L LLE+++  GDDW  ++Q VS KS  DCI+  I+LPFG+              + ++ ++E V        +  +     D V+E E      P+KR R+  +++  + +M Q A +++  G  +A  A
Sbjct:  206 GNYGENNTADDFKL--IGNSAAAVWTEEEILLLLESVLKHGDDWELISQSVSTKSRLDCISKLIELPFGEFLMGSASGRLNPSILTEDENTEQVQTDGQEHEETETREEKEDRVNEDE-----PPAKRKRVALISEGDSSLMKQVAAMASKVGPSVATAA 358          
BLAST of CN184058 vs. ExPASy Swiss-Prot
Match: SWI3C_ARATH (SWI/SNF complex subunit SWI3C OS=Arabidopsis thaliana GN=SWI3C PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.556e-12
Identity = 47/152 (30.92%), Postives = 73/152 (48.03%), Query Frame = 2
Query:   11 GNHRVGVSSSDFRRVE----ISEEARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKLPFGQEFICK---------ESDSEDVDNKFFSINNPSDAVSESENVGATSPSKRMRLTPLADASNPIMAQAAFLSALAGVEIA 427
            G   VG S  DF RV+      ++   +WT++ETL LLEA+  + ++W ++A HV  KS+  CI HF++LP     +           E+ +   D+K    N      SE    G+ +  K     P   + NP+MA  AFL++  G  +A
Sbjct:  375 GRFVVGHSCLDFVRVDPMKFYGDQDGDNWTDQETLLLLEAVELYNENWVQIADHVGSKSKAQCILHFLRLPVEDGLLDNVEVSGVTNTENPTNGYDHKGTDSNGDLPGYSEQ---GSDTEIK----LPFVKSPNPVMALVAFLASAVGPRVA 519          
BLAST of CN184058 vs. ExPASy Swiss-Prot
Match: MYBX_DICDI (Myb-like protein X OS=Dictyostelium discoideum GN=mybX PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.359e-12
Identity = 37/106 (34.91%), Postives = 59/106 (55.66%), Query Frame = 2
Query:   11 GNHRVGVSSSDFRRVEISEEARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSG-KSEKDCITHFIKLPFGQEFI-------------CKESDSEDVDNKFFSINNP 286
            GN+   + SS F+R+E  +     WT+ ETL LLE I  F D+W++++ ++ G K+ + C+THFI+LP   EF+              KE DS +  +  + +NNP
Sbjct:  906 GNYENFIQSSSFQRIEQHQPEEFGWTDIETLLLLEGIEIFRDNWQEISDYIGGSKTPEQCLTHFIRLPIEDEFLERKISSFPVGSLSKKEIDSNNPFSITYGVNNP 1011          
BLAST of CN184058 vs. ExPASy Swiss-Prot
Match: SMRC1_MOUSE (SWI/SNF complex subunit SMARCC1 OS=Mus musculus GN=Smarcc1 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.693e-12
Identity = 36/122 (29.51%), Postives = 60/122 (49.18%), Query Frame = 2
Query:   71 ARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKLPFGQEFICKESDSEDVDNKFFSINNPSDAVSESENVGATSPSKRMRLTPLADASNPIMAQAAFLSALAGVEIAEVA 436
            A  +WTE+ETL LLEA+  + DDW KV++HV  +++ +CI HF++LP    ++                          EN  A+      +  P + + NP+M+  AFL+++    +A  A
Sbjct:  618 AGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYL--------------------------ENSDASLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVASAA 713          
BLAST of CN184058 vs. ExPASy Swiss-Prot
Match: SMRC1_HUMAN (SWI/SNF complex subunit SMARCC1 OS=Homo sapiens GN=SMARCC1 PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 5.693e-12
Identity = 36/122 (29.51%), Postives = 60/122 (49.18%), Query Frame = 2
Query:   71 ARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKLPFGQEFICKESDSEDVDNKFFSINNPSDAVSESENVGATSPSKRMRLTPLADASNPIMAQAAFLSALAGVEIAEVA 436
            A  +WTE+ETL LLEA+  + DDW KV++HV  +++ +CI HF++LP    ++                          EN  A+      +  P + + NP+M+  AFL+++    +A  A
Sbjct:  619 AGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYL--------------------------ENSDASLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVASAA 714          
BLAST of CN184058 vs. ExPASy Swiss-Prot
Match: SMRC2_MOUSE (SWI/SNF complex subunit SMARCC2 OS=Mus musculus GN=Smarcc2 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.656e-11
Identity = 37/122 (30.33%), Postives = 61/122 (50.00%), Query Frame = 2
Query:   71 ARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKLPFGQEFICKESDSEDVDNKFFSINNPSDAVSESENVGATSPSKRMRLTPLADASNPIMAQAAFLSALAGVEIAEVA 436
            A  +WTE+ETL LLEA+  + DDW KV++HV  +++ +CI HF++LP    ++    DSE                       A+      +  P + + NP+M+  AFL+++    +A  A
Sbjct:  597 ATREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYL---EDSE-----------------------ASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVASAA 692          
BLAST of CN184058 vs. ExPASy Swiss-Prot
Match: SMRC2_HUMAN (SWI/SNF complex subunit SMARCC2 OS=Homo sapiens GN=SMARCC2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.656e-11
Identity = 37/122 (30.33%), Postives = 61/122 (50.00%), Query Frame = 2
Query:   71 ARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKLPFGQEFICKESDSEDVDNKFFSINNPSDAVSESENVGATSPSKRMRLTPLADASNPIMAQAAFLSALAGVEIAEVA 436
            A  +WTE+ETL LLEA+  + DDW KV++HV  +++ +CI HF++LP    ++    DSE                       A+      +  P + + NP+M+  AFL+++    +A  A
Sbjct:  597 ATREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYL---EDSE-----------------------ASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVASAA 692          
BLAST of CN184058 vs. ExPASy Swiss-Prot
Match: SWI3_YEAST (SWI/SNF complex subunit SWI3 OS=Saccharomyces cerevisiae GN=SWI3 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.820e-11
Identity = 36/128 (28.12%), Postives = 62/128 (48.44%), Query Frame = 2
Query:   26 GVSSSDFRRVEISEEARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKLPFGQEFICKESDSEDVDNKFFSINNPSDAVSESENVGATSPSKRMRLTPLADASNPIMAQAAFLSAL 409
            G +S   ++V+I E+   +W++++  +LL+ I  FG DW KVA++V  KS + CI  F++LP   +F+                    D   + +N     P K     P + + NP+++  AFL  L
Sbjct:  508 GETSRPLKKVKILEQIDENWSKEDLQKLLKGIQEFGADWYKVAKNVGNKSPEQCILRFLQLPIEDKFLY------------------GDGNGKGDNDNGLGPLKYAPHLPFSKSENPVLSTIAFLVGL 617          
The following BLAST results are available for this feature:
BLAST of CN184058 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
SWI3B_ARATH3.533e-4661.11SWI/SNF complex subunit SWI3B OS=Arabidopsis thali... [more]
SWI3A_ARATH3.019e-1329.38SWI/SNF complex subunit SWI3A OS=Arabidopsis thali... [more]
SWI3C_ARATH2.556e-1230.92SWI/SNF complex subunit SWI3C OS=Arabidopsis thali... [more]
MYBX_DICDI4.359e-1234.91Myb-like protein X OS=Dictyostelium discoideum GN=... [more]
SMRC1_MOUSE5.693e-1229.51SWI/SNF complex subunit SMARCC1 OS=Mus musculus GN... [more]
SMRC1_HUMAN5.693e-1229.51SWI/SNF complex subunit SMARCC1 OS=Homo sapiens GN... [more]
SMRC2_MOUSE1.656e-1130.33SWI/SNF complex subunit SMARCC2 OS=Mus musculus GN... [more]
SMRC2_HUMAN1.656e-1130.33SWI/SNF complex subunit SMARCC2 OS=Homo sapiens GN... [more]
SWI3_YEAST4.820e-1128.13SWI/SNF complex subunit SWI3 OS=Saccharomyces cere... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0004P05_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0004P05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184058 ID=CN184058; Name=CN184058; organism=Citrus sinensis; type=EST; length=436bp
GAGGGTCCGTGGTAACCATCGGGTGGGTGTTAGCTCGTCTGATTTCAGGC
GGGTCGAGATCAGTGAGGAGGCTAGATCGGATTGGACAGAGAAAGAAACT
TTGCAACTTCTGGAGGCCATTATGCATTTTGGTGATGACTGGAGGAAGGT
TGCACAGCATGTCAGTGGTAAAAGTGAGAAGGACTGCATCACTCATTTTA
TCAAGCTCCCTTTTGGGCAGGAATTTATTTGTAAAGAATCAGATTCGGAG
GATGTGGATAATAAGTTTTTTTCTATCAACAACCCTAGTGATGCTGTAAG
TGAATCGGAAAATGTTGGCGCTACATCCCCGAGTAAGAGAATGCGTCTCA
CCCCTCTTGCCGATGCAAGTAACCCAATAATGGCTCAGGCAGCTTTCCTG
TCGGCTTTGGCTGGTGTCGAGATTGCTGAAGTTGCT
back to top