CN183986

Overview
NameCN183986
Unique NameCN183986
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN183986 vs. ExPASy Swiss-Prot
Match: IF41_WHEAT (Eukaryotic initiation factor iso-4F subunit p82-34 OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 238.039 bits (606), Expect = 3.988e-62
Identity = 132/227 (58.15%), Postives = 159/227 (70.04%), Query Frame = 3
Query:  105 LPPHGGVASAF-KMGDLRFEGHERVRYTREQLLQLKEVAQLTEDILKIKQEIESEFDGEGQSWGGRAENNNLQSQFQA------RYLEADNRDWRTRSTTSG-----QEKSLEANQEKMEFGAHEGQLNSQFASAQISTNQGA--GPAPALIKAEVPWSARRGNLSEKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYA 743
            L PHGG AS   ++GDL  E  ERVRY+R+QLL L+++  +TE IL+++QEIE+E +G+ QSW     N  LQ+Q Q       R+ E DNRDWR R+         +EKS +  +E  E     G+   QF     S++Q A  GP PALIKA+VPWSARRGNLSEKDRVLKTVKGILNKLTPEKFD+LKGQL+DSGITT DILK VI LIF+KAV EPTFCPMYA
Sbjct:   40 LRPHGGGASGVSRIGDLHSESRERVRYSRDQLLDLRKITDVTEQILRLQQEIEAELNGDDQSWVRNDSNVQLQTQAQPQVQAQNRFTETDNRDWRARTEKPPAPAVQEEKSWDNIREVKEQYNASGRQQEQFNRQDQSSSQKAQVGPPPALIKADVPWSARRGNLSEKDRVLKTVKGILNKLTPEKFDLLKGQLLDSGITTADILKDVISLIFEKAVFEPTFCPMYA 266          
BLAST of CN183986 vs. ExPASy Swiss-Prot
Match: C3H43_ORYSJ (Zinc finger CCCH domain-containing protein 43 OS=Oryza sativa subsp. japonica GN=Os06g0520600 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.634e-31
Identity = 83/205 (40.49%), Postives = 120/205 (58.54%), Query Frame = 3
Query:  165 HERVRYTREQLLQLKEVAQLTEDILKIKQEIESEFDGEGQSWGGRAENNNLQSQFQARYLEADNRDWRTRSTTSGQEKSLEAN----QEKMEFGAHEGQLNSQFASAQISTNQG-------AGPAPA-LIKAEVPWSARRGNLSEKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGVIELIFDKAVLEPTFCPMYA 743
            H+R+ YTR+QLLQL +  ++ +DILK  Q+I  E +GE +  G  AE +++Q+    R+   D+RDW + S  +  E+    N    +E    G  + + N    S+    ++          P  + LIKAEVP S +RG +S KD VLKT+K ILN  +P+ FD+ KGQLI++ I++ DILK VI LIF+K V EP FC  YA
Sbjct:  235 HQRISYTRDQLLQLCQNVEVPKDILKFCQDINVELNGEDKISGFGAEKDHVQTPSYKRFDATDSRDWHSWSAQTNWEQKFWDNFSEAKEPYSLGWKQEKFNKPDQSSFHFDSKDQWLKFIKCTPCKSTLIKAEVPLSIQRGIISGKDEVLKTLKSILNTFSPKMFDLQKGQLIETRISSADILKDVINLIFEKVVAEPAFCSTYA 439          
The following BLAST results are available for this feature:
BLAST of CN183986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
IF41_WHEAT3.988e-6258.15Eukaryotic initiation factor iso-4F subunit p82-34... [more]
C3H43_ORYSJ1.634e-3140.49Zinc finger CCCH domain-containing protein 43 OS=O... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0004N09_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0004N09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN183986 ID=CN183986; Name=CN183986; organism=Citrus sinensis; type=EST; length=743bp
GAGGGATAAGCTTGAGACCCGGTGGCGGCGGCGGTCCACGTGGCACCAGA
TTGTTCACTCATCGCTTCGATTCCTCATCAACACCCTCGTCTGATTCTCA
AACTCTTCCCCCTCATGGCGGCGTCGCTTCCGCTTTCAAGATGGGGGACT
TGCGGTTTGAAGGTCATGAACGTGTTCGATACACCCGAGAGCAGCTGTTA
CAACTTAAGGAGGTTGCTCAACTAACTGAAGACATTTTGAAGATAAAGCA
AGAAATTGAGTCTGAGTTTGATGGCGAAGGTCAAAGCTGGGGTGGTCGTG
CAGAAAATAACAATCTGCAATCTCAATTCCAAGCTCGTTACTTGGAGGCA
GACAATCGTGATTGGCGTACTCGATCAACCACCTCTGGACAAGAGAAATC
CTTGGAAGCAAATCAAGAAAAGATGGAATTTGGTGCTCATGAGGGCCAAC
TTAATTCCCAGTTCGCAAGTGCTCAAATCTCCACTAACCAAGGGGCAGGA
CCTGCTCCAGCTCTAATTAAGGCTGAAGTTCCATGGTCAGCAAGACGAGG
AAATCTCTCAGAGAAGGATCGTGTTCTTAAGACTGTTAAAGGAATACTGA
ATAAATTGACTCCAGAGAAGTTTGATGTTCTCAAGGGTCAGCTAATAGAC
TCTGGAATTACAACCCCAGATATTCTGAAGGGTGTTATTGAACTTATATT
TGATAAGGCTGTCTTGGAGCCTACATTTTGTCCCATGTATGCA
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