FC921884

Overview
NameFC921884
Unique NameFC921884
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length209
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10774 contig Csv1_Contig10774:583..792. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC921884 vs. ExPASy Swiss-Prot
Match: ISPG_PARUW (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Protochlamydia amoebophila (strain UWE25) GN=ispG PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.494e-21
Identity = 46/54 (85.19%), Postives = 50/54 (92.59%), Query Frame = -1 
Query:   45 RAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASN 206
            RA+RIGTNHGSLSDRIM+ YGD+P GMVESA EFARICRK D+HNFLFSMKASN
Sbjct:  162 RAMRIGTNHGSLSDRIMNRYGDTPFGMVESALEFARICRKNDYHNFLFSMKASN 215

HSP 2 Score: 23.0978 bits (48), Expect = 5.494e-21
Identity = 9/15 (60.00%), Postives = 12/15 (80.00%), Query Frame = -3 
Query:   13 ESKQPVVMVQAYRLL 57
            ++  P VM+QAYRLL
Sbjct:  212 KASNPQVMIQAYRLL 226
[Close]
BLAST of FC921884 vs. ExPASy Swiss-Prot
Match: ISPG_AKKM8 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=ispG PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.335e-17
Identity = 39/55 (70.91%), Postives = 49/55 (89.09%), Query Frame = -1 
Query:   45 GRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASN 209
            GRA+RIG+NHGSLSDRI++ +GD+P GMVESA EFA+I R LD+H+ +FSMKASN
Sbjct:  159 GRAMRIGSNHGSLSDRILNRFGDTPEGMVESAIEFAQIARDLDYHSLVFSMKASN 213
[Close]
BLAST of FC921884 vs. ExPASy Swiss-Prot
Match: ISPG_SYNP2 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ispG PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.006e-15
Identity = 36/54 (66.67%), Postives = 45/54 (83.33%), Query Frame = -1 
Query:   48 GRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKAS 209
            G+A+RIG NHGSL++R++  YGD+P GMVESA EF RIC+ LDFHN + SMKAS
Sbjct:  168 GKAMRIGVNHGSLAERMLFTYGDTPEGMVESALEFIRICQSLDFHNLIISMKAS 221
[Close]
BLAST of FC921884 vs. ExPASy Swiss-Prot
Match: ISPG_SYNSC (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Synechococcus sp. (strain CC9605) GN=ispG PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.242e-15
Identity = 36/53 (67.92%), Postives = 44/53 (83.02%), Query Frame = -1 
Query:   48 RAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKAS 206
            +A+RIG NHGSL++R++  YGD+P GMVESA EF RIC +LDFHN L SMKAS
Sbjct:  162 KALRIGVNHGSLAERMLFTYGDTPEGMVESAMEFVRICHELDFHNILISMKAS 214
[Close]
BLAST of FC921884 vs. ExPASy Swiss-Prot
Match: ISPG_LEPBL (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=ispG PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.752e-15
Identity = 36/55 (65.45%), Postives = 46/55 (83.64%), Query Frame = -1 
Query:   45 GRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASN 209
            G ++RIGTNHGSLSDRIM+ YGD+P+GMVESA EF RI   L++++ + SMKASN
Sbjct:  159 GVSMRIGTNHGSLSDRIMNRYGDTPQGMVESALEFIRIAESLNYYDIVVSMKASN 213

HSP 2 Score: 23.0978 bits (48), Expect = 2.752e-15
Identity = 9/17 (52.94%), Postives = 13/17 (76.47%), Query Frame = -3 
Query:    7 ESKQPVVMVQAYRLLVA 57
            ++  P VMVQAYR+L +
Sbjct:  210 KASNPQVMVQAYRMLAS 226
[Close]
BLAST of FC921884 vs. ExPASy Swiss-Prot
Match: ISPG_LEPBJ (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=ispG PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.752e-15
Identity = 36/55 (65.45%), Postives = 46/55 (83.64%), Query Frame = -1 
Query:   45 GRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASN 209
            G ++RIGTNHGSLSDRIM+ YGD+P+GMVESA EF RI   L++++ + SMKASN
Sbjct:  159 GVSMRIGTNHGSLSDRIMNRYGDTPQGMVESALEFIRIAESLNYYDIVVSMKASN 213

HSP 2 Score: 23.0978 bits (48), Expect = 2.752e-15
Identity = 9/17 (52.94%), Postives = 13/17 (76.47%), Query Frame = -3 
Query:    7 ESKQPVVMVQAYRLLVA 57
            ++  P VMVQAYR+L +
Sbjct:  210 KASNPQVMVQAYRMLAS 226
[Close]
BLAST of FC921884 vs. ExPASy Swiss-Prot
Match: ISPG_CHLTE (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlorobium tepidum GN=ispG PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.568e-15
Identity = 36/55 (65.45%), Postives = 46/55 (83.64%), Query Frame = -1 
Query:   45 GRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASN 209
            G ++RIGTNHGSLSDRI+S YG+SP GMVE+A EF+RIC    +++ LFSMK+SN
Sbjct:  220 GVSMRIGTNHGSLSDRIVSRYGNSPEGMVEAALEFSRICEDEGYYDQLFSMKSSN 274

HSP 2 Score: 23.483 bits (49), Expect = 3.568e-15
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = -3 
Query:    7 VMVQAYRLLVA 39
            VM+QAYRLLVA
Sbjct:  277 VMIQAYRLLVA 287
[Close]
BLAST of FC921884 vs. ExPASy Swiss-Prot
Match: ISPG_LEPIN (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Leptospira interrogans GN=ispG PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.576e-15
Identity = 36/55 (65.45%), Postives = 45/55 (81.82%), Query Frame = -1 
Query:   45 GRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASN 209
            G ++RIGTNHGSLSDRIM+ YGD+P+GMVESA EF RI   L +++ + SMKASN
Sbjct:  159 GVSMRIGTNHGSLSDRIMNRYGDTPQGMVESALEFIRIAESLGYYDIIVSMKASN 213

HSP 2 Score: 23.0978 bits (48), Expect = 3.576e-15
Identity = 9/17 (52.94%), Postives = 13/17 (76.47%), Query Frame = -3 
Query:    7 ESKQPVVMVQAYRLLVA 57
            ++  P VMVQAYR+L +
Sbjct:  210 KASNPQVMVQAYRMLAS 226
[Close]
BLAST of FC921884 vs. ExPASy Swiss-Prot
Match: ISPG_LEPIC (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=ispG PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.576e-15
Identity = 36/55 (65.45%), Postives = 45/55 (81.82%), Query Frame = -1 
Query:   45 GRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASN 209
            G ++RIGTNHGSLSDRIM+ YGD+P+GMVESA EF RI   L +++ + SMKASN
Sbjct:  159 GVSMRIGTNHGSLSDRIMNRYGDTPQGMVESALEFIRIAESLGYYDIIVSMKASN 213

HSP 2 Score: 23.0978 bits (48), Expect = 3.576e-15
Identity = 9/17 (52.94%), Postives = 13/17 (76.47%), Query Frame = -3 
Query:    7 ESKQPVVMVQAYRLLVA 57
            ++  P VMVQAYR+L +
Sbjct:  210 KASNPQVMVQAYRMLAS 226
[Close]
BLAST of FC921884 vs. ExPASy Swiss-Prot
Match: ISPG_SYNPX (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Synechococcus sp. (strain WH8102) GN=ispG PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.994e-15
Identity = 35/53 (66.04%), Postives = 45/53 (84.91%), Query Frame = -1 
Query:   48 RAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKAS 206
            +A+RIG NHGSL++R++  YGD+P+GMVESA EF RIC +LDFHN + SMKAS
Sbjct:  162 KALRIGVNHGSLAERMLFTYGDTPKGMVESAMEFVRICDELDFHNIVISMKAS 214
The following BLAST results are available for this feature:
BLAST of FC921884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
ISPG_PARUW5.494e-2185.194-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_AKKM85.335e-1770.914-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SYNP21.006e-1566.674-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SYNSC2.242e-1567.924-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_LEPBL2.752e-1565.454-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_LEPBJ2.752e-1565.454-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLTE3.568e-1565.454-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_LEPIN3.576e-1565.454-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_LEPIC3.576e-1565.454-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SYNPX4.994e-1566.044-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]

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Properties
Property NameValue
Genbank descriptionC06053E06T7 RindPdigS Citrus sinensis cDNA clone C06053E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921884 ID=FC921884; Name=FC921884; organism=Citrus sinensis; type=EST; length=209bp
CTTTTCAGCTACAAGTAGACGGTATGCTTGGACCATTACGACTGGTTGCT
TGCTTTCATTGAAAAGAGAAAATTATGGAAGTCCAATTTCCGGCAGATTC
TTGCAAACTCAAAGGCAGATTCAACCATTCCCCTAGGAGAATCCCCATAG
TAGCTCATGATACGATCTGAAAGGCTCCCATGGTTAGTCCCAATACGCAC
TGCCCTTCC
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