FC921882

Overview
NameFC921882
Unique NameFC921882
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length374
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13532 contig Csv1_Contig13532:15..388. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921882 vs. ExPASy Swiss-Prot
Match: Y3545_ARATH (Probable receptor-like protein kinase At3g55450 OS=Arabidopsis thaliana GN=At3g55450 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.620e-16
Identity = 47/125 (37.60%), Postives = 71/125 (56.80%), Query Frame = 1
Query:    4 ISEGLSSVMYRASFGDDASTSKKFEA----TVTRLNPSS-QGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRVLIYERLFHGSLDRLIY--GRSDGPPIDWNTRVKIALCAAQGLTFLHEE 357
            + EG    ++R    +   T  K  +     V RLNP   QG +E++ ++N L  L HPNL KL+G+   D  +QR+L+YE +  GSL+  ++  G  D  P+ W  R+K+AL AA+GL FLH +
Sbjct:   67 VGEGGFGCVFRGWLDETTLTPTKSSSGLVIAVKRLNPDGFQGHREWLTEINYLGQLSHPNLVKLIGYCLED--EQRLLVYEFMHKGSLENHLFANGNKDFKPLSWILRIKVALDAAKGLAFLHSD 189          
BLAST of FC921882 vs. ExPASy Swiss-Prot
Match: RLCK7_ARATH (Probable serine/threonine-protein kinase RLCKVII OS=Arabidopsis thaliana GN=At1g07870 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.451e-15
Identity = 46/115 (40.00%), Postives = 68/115 (59.13%), Query Frame = 1
Query:   43 FGDDASTSKKFEATVTRLNP----------SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRVLIYERLFHGSLDRLIYGRSDGP-PIDWNTRVKIALCAAQGLTFLHE 354
            F  +    K F+ T+ +L+             QG++EF+ +V TL+   HPNL KL+GF A    DQR+L+YE +  GSL+  ++    G  P+DWNTR+KIA  AA+GL +LH+
Sbjct:  108 FLGEGGFGKVFKGTIEKLDQVVAIKQLDRNGVQGIREFVVEVLTLSLADHPNLVKLIGFCAE--GDQRLLVYEYMPQGSLEDHLHVLPSGKKPLDWNTRMKIAAGAARGLEYLHD 220          
BLAST of FC921882 vs. ExPASy Swiss-Prot
Match: Y1765_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g07650 OS=Arabidopsis thaliana GN=At1g07650 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.461e-14
Identity = 39/87 (44.83%), Postives = 57/87 (65.52%), Query Frame = 1
Query:  103 SSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRVLIYERLFHGSLDRLIYGRSDGP--PIDWNTRVKIALCAAQGLTFLHEE 357
            S QG +EF+N++  +++LQHPNL KL G       +Q +L+YE L +  L R ++G+ +     +DW+TR KI L  A+GLTFLHEE
Sbjct:  712 SRQGNREFVNEIGMISALQHPNLVKLYGCCVE--GNQLILVYEYLENNCLSRALFGKDESSRLKLDWSTRKKIFLGIAKGLTFLHEE 796          
BLAST of FC921882 vs. ExPASy Swiss-Prot
Match: NORK_MEDTR (Nodulation receptor kinase OS=Medicago truncatula GN=NORK PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 7.132e-14
Identity = 47/117 (40.17%), Postives = 69/117 (58.97%), Query Frame = 1
Query:    4 ISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRVLIYERLFHGS-LDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLH 351
            I EG    +YR +  D    + K      R + S+QG +EF N++N L+++QH NL  LLG+   +  DQ++L+Y  + +GS LDRL    S    +DW TR+ IAL AA+GL +LH
Sbjct:  602 IGEGGFGSVYRGTLDDGQEVAVK-----VRSSTSTQGTREFDNELNLLSAIQHENLVPLLGY--CNEYDQQILVYPFMSNGSLLDRLYGEASKRKILDWPTRLSIALGAARGLAYLH 711          
BLAST of FC921882 vs. ExPASy Swiss-Prot
Match: NAK_ARATH (Probable serine/threonine-protein kinase NAK OS=Arabidopsis thaliana GN=NAK PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 9.315e-14
Identity = 41/95 (43.16%), Postives = 60/95 (63.16%), Query Frame = 1
Query:   85 VTRLNPSS-QGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRVLIYERLFHGSLDRLIYGRSDG-PPIDWNTRVKIALCAAQGLTFLHEEGP 363
            V RLN    QG +E++ ++N L  L HPNL KL+G+   +  + R+L+YE +  GSL+  ++ R     P+ WNTRV++AL AA+GL FLH   P
Sbjct:  105 VKRLNQEGFQGHREWLAEINYLGQLDHPNLVKLIGYCLEE--EHRLLVYEFMTRGSLENHLFRRGTFYQPLSWNTRVRMALGAARGLAFLHNAQP 197          
BLAST of FC921882 vs. ExPASy Swiss-Prot
Match: CRK41_ARATH (Cysteine-rich receptor-like protein kinase 41 OS=Arabidopsis thaliana GN=CRK41 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.589e-13
Identity = 43/99 (43.43%), Postives = 61/99 (61.62%), Query Frame = 1
Query:   76 EATVTRLN-PSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRVLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHEEGPFQ 369
            E  V RL+  S QG  EFIN+V+ +A LQH NL +LLGF  +   ++R+LIYE   + SLD  I+  +    +DW TR +I    A+GL +LHE+  F+
Sbjct:  368 EIAVKRLSMKSGQGDNEFINEVSLVAKLQHRNLVRLLGFCLQ--GEERILIYEFFKNTSLDHYIFDSNRRMILDWETRYRIISGVARGLLYLHEDSRFK 464          
BLAST of FC921882 vs. ExPASy Swiss-Prot
Match: NORK_PEA (Nodulation receptor kinase OS=Pisum sativum GN=NORK PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.623e-13
Identity = 45/117 (38.46%), Postives = 68/117 (58.12%), Query Frame = 1
Query:    4 ISEGLSSVMYRASFGDDASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRVLIYERLFHGS-LDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLH 351
            I EG    +YR +  D    + K  +       S+QG +EF N++N L+++QH NL  LLG+   +  DQ++L+Y  + +GS LDRL    +    +DW TR+ IAL AA+GL +LH
Sbjct:  601 IGEGGFGSVYRGTLDDGQEVAVKVRSAT-----STQGTREFDNELNLLSAIQHENLVPLLGY--CNEYDQQILVYPFMSNGSLLDRLYGEPAKRKILDWPTRLSIALGAARGLAYLH 710          
BLAST of FC921882 vs. ExPASy Swiss-Prot
Match: Y1677_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g67720 OS=Arabidopsis thaliana GN=At1g67720 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.885e-13
Identity = 42/119 (35.29%), Postives = 70/119 (58.82%), Query Frame = 1
Query:    7 SEGLSSVMYRASFGD----DASTSKKFEATVTRLNPSSQGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRVLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLH 351
            ++  S  + R SFG          K+    +T  +PSS   ++F+ +V  L+ + H NL  L+G+   + +D+R+L+YE + +GSL   ++G SD  P+DW TR++IA  AA+GL +LH
Sbjct:  605 TDNFSKKVGRGSFGSVYYGRMKDGKEVAVKITA-DPSSHLNRQFVTEVALLSRIHHRNLVPLIGYC--EEADRRILVYEYMHNGSLGDHLHGSSDYKPLDWLTRLQIAQDAAKGLEYLH 720          
BLAST of FC921882 vs. ExPASy Swiss-Prot
Match: APK2A_ARATH (Protein kinase 2A, chloroplastic OS=Arabidopsis thaliana GN=APK2A PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.345e-12
Identity = 40/91 (43.96%), Postives = 58/91 (63.74%), Query Frame = 1
Query:   85 VTRLNPSS-QGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRVLIYERLFHGSLDRLIYGRSDGPPIDWNTRVKIALCAAQGLTFLHE 354
            V +L P   QG KE++ +VN L  L HPNL  L+G+ A    + R+L+YE +  GSL+  ++ R    P+ W  R+K+A+ AA+GLTFLHE
Sbjct:  123 VKQLKPEGFQGHKEWLTEVNYLGQLSHPNLVLLVGYCAE--GENRLLVYEFMPKGSLENHLFRRG-AQPLTWAIRMKVAVGAAKGLTFLHE 210          
BLAST of FC921882 vs. ExPASy Swiss-Prot
Match: LRKA2_ARATH (Lectin-domain containing receptor kinase A4.2 OS=Arabidopsis thaliana GN=LECRKA4.2 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.757e-12
Identity = 42/108 (38.89%), Postives = 63/108 (58.33%), Query Frame = 1
Query:   43 FGDDASTSKKFEATVTRLNPSS-QGVKEFINDVNTLASLQHPNLCKLLGFHARDGSDQRVLIYERLFHGSLDRLIYGR--SDGPPIDWNTRVKIALCAAQGLTFLHEE 357
            F  + S+    +  V ++ P+S QGV+EFI ++ +L  L+H NL  L G+  +   +  +LIY+ + +GSLD L+Y R    G  + WN R KIA   A GL +LHEE
Sbjct:  376 FRGNLSSPSSDQIAVKKITPNSMQGVREFIAEIESLGRLRHKNLVNLQGWCKQ--KNDLLLIYDYIPNGSLDSLLYSRPRQSGVVLSWNARFKIAKGIASGLLYLHEE 481          
The following BLAST results are available for this feature:
BLAST of FC921882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
Y3545_ARATH7.620e-1637.60Probable receptor-like protein kinase At3g55450 OS... [more]
RLCK7_ARATH6.451e-1540.00Probable serine/threonine-protein kinase RLCKVII O... [more]
Y1765_ARATH5.461e-1444.83Probable LRR receptor-like serine/threonine-protei... [more]
NORK_MEDTR7.132e-1440.17Nodulation receptor kinase OS=Medicago truncatula ... [more]
NAK_ARATH9.315e-1443.16Probable serine/threonine-protein kinase NAK OS=Ar... [more]
CRK41_ARATH1.589e-1343.43Cysteine-rich receptor-like protein kinase 41 OS=A... [more]
NORK_PEA4.623e-1338.46Nodulation receptor kinase OS=Pisum sativum GN=NOR... [more]
Y1677_ARATH7.885e-1335.29Probable LRR receptor-like serine/threonine-protei... [more]
APK2A_ARATH1.345e-1243.96Protein kinase 2A, chloroplastic OS=Arabidopsis th... [more]
LRKA2_ARATH1.757e-1238.89Lectin-domain containing receptor kinase A4.2 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionC06053E04T7 RindPdigS Citrus sinensis cDNA clone C06053E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921882 ID=FC921882; Name=FC921882; organism=Citrus sinensis; type=EST; length=374bp
TGCATTTCAGAAGGTCTATCCTCTGTAATGTATAGGGCTTCGTTTGGAGA
TGATGCTTCAACTTCAAAAAAGTTTGAAGCCACTGTTACTCGCCTTAATC
CATCCAGCCAGGGTGTGAAGGAATTTATAAATGATGTAAACACCCTTGCA
TCATTGCAACATCCAAATCTCTGTAAATTGCTTGGTTTTCATGCACGTGA
TGGATCGGACCAGAGAGTGTTGATCTATGAGAGACTTTTTCATGGAAGCT
TGGACCGTCTTATTTATGGGAGATCAGATGGGCCTCCAATTGATTGGAAC
ACCAGGGTAAAAATTGCATTATGTGCTGCACAAGGTCTTACCTTCTTGCA
TGAAGAAGGGCCTTTTCAGGCAAT
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