CX676432

Overview
NameCX676432
Unique NameCX676432
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length499
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX676432 vs. ExPASy Swiss-Prot
Match: RL40_NICSY (60S ribosomal protein L40 OS=Nicotiana sylvestris GN=UBICEP52-7 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.476e-24
Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = -2 
Query:  226 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 381
            IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCR+KKCGHSNQLRPKKKIK
Sbjct:    1 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRRKKCGHSNQLRPKKKIK 52
[Close]
BLAST of CX676432 vs. ExPASy Swiss-Prot
Match: RL40_ORYSJ (60S ribosomal protein L40 OS=Oryza sativa subsp. japonica GN=Ub-CEP52-1 PE=3 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 2.517e-24
Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = -2 
Query:  226 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 381
            IIEPSL ALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK
Sbjct:    1 IIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 52
[Close]
BLAST of CX676432 vs. ExPASy Swiss-Prot
Match: RL40_ARATH (60S ribosomal protein L40 OS=Arabidopsis thaliana GN=UBQ1 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.517e-24
Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = -2 
Query:  226 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 381
            IIEPSLM LARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK
Sbjct:    1 IIEPSLMMLARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 52
[Close]
BLAST of CX676432 vs. ExPASy Swiss-Prot
Match: RL40_BRARA (60S ribosomal protein L40 OS=Brassica rapa PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 5.607e-24
Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = -2 
Query:  226 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 381
            IIEPSLMALARKYNQ KMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK
Sbjct:    1 IIEPSLMALARKYNQAKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 52
[Close]
BLAST of CX676432 vs. ExPASy Swiss-Prot
Match: RL40_CHLRE (60S ribosomal protein L40 OS=Chlamydomonas reinhardtii GN=UBI1 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 5.248e-22
Identity = 46/52 (88.46%), Postives = 49/52 (94.23%), Query Frame = -2 
Query:  226 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 381
            IIEPSL ALARKYNQ+KMICRKCYARLHPRA NCRKK CGH+NQLRPKKK+K
Sbjct:    1 IIEPSLQALARKYNQEKMICRKCYARLHPRAKNCRKKSCGHTNQLRPKKKLK 52
[Close]
BLAST of CX676432 vs. ExPASy Swiss-Prot
Match: RL40_SHEEP (60S ribosomal protein L40 OS=Ovis aries GN=UBA52 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.402e-21
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = -2 
Query:  226 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 381
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of CX676432 vs. ExPASy Swiss-Prot
Match: RL40_RAT (60S ribosomal protein L40 OS=Rattus norvegicus GN=Uba52 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.402e-21
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = -2 
Query:  226 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 381
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of CX676432 vs. ExPASy Swiss-Prot
Match: RL40_PONAB (60S ribosomal protein L40 OS=Pongo abelii GN=UBA52 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.402e-21
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = -2 
Query:  226 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 381
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of CX676432 vs. ExPASy Swiss-Prot
Match: RL40_PIG (60S ribosomal protein L40 OS=Sus scrofa GN=UBA52 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.402e-21
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = -2 
Query:  226 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 381
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of CX676432 vs. ExPASy Swiss-Prot
Match: RL40_OPHHA (60S ribosomal protein L40 OS=Ophiophagus hannah PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.402e-21
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = -2 
Query:  226 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 381
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
The following BLAST results are available for this feature:
BLAST of CX676432 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
RL40_NICSY1.476e-2498.0860S ribosomal protein L40 OS=Nicotiana sylvestris ... [more]
RL40_ORYSJ2.517e-2498.0860S ribosomal protein L40 OS=Oryza sativa subsp. j... [more]
RL40_ARATH2.517e-2498.0860S ribosomal protein L40 OS=Arabidopsis thaliana ... [more]
RL40_BRARA5.607e-2498.0860S ribosomal protein L40 OS=Brassica rapa PE=3 SV... [more]
RL40_CHLRE5.248e-2288.4660S ribosomal protein L40 OS=Chlamydomonas reinhar... [more]
RL40_SHEEP3.402e-2186.5460S ribosomal protein L40 OS=Ovis aries GN=UBA52 P... [more]
RL40_RAT3.402e-2186.5460S ribosomal protein L40 OS=Rattus norvegicus GN=... [more]
RL40_PONAB3.402e-2186.5460S ribosomal protein L40 OS=Pongo abelii GN=UBA52... [more]
RL40_PIG3.402e-2186.5460S ribosomal protein L40 OS=Sus scrofa GN=UBA52 P... [more]
RL40_OPHHA3.402e-2186.5460S ribosomal protein L40 OS=Ophiophagus hannah PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_69F08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-69F08-K15-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676432 ID=CX676432; Name=CX676432; organism=Citrus sinensis; type=EST; length=499bp
TTTTTAGAAAATAGTAGATTCAGGCAAGTTATAATAAAGTGCTCAATGTC
ACGGCACATAGAGGCGATAGTAATCAGTCTACAAATACTCTCAACCCTGG
AAACATCTTGAAACAGAAATCACGTACTAAGTGACAACTATTACTAGGCA
ATAGTTGATGCTACATATTCTAGGCAAAACATCCTGTTTCAGTATAAAAT
GTAGCATTTCTCTGCAGAATATCTACTTGATCTTCTTCTTTGGCCTCAGC
TGGTTGCTGTGCCCACATTTCTTCTTCCTGCAGTTCACAGCACGGGGGTG
CAGGCGTGCATAACATTTTCGGCAGATCATCTTGTCCTGGTTATACTTCC
TTGCCAATGCCATCAAAGAAGGCTCAATAATACCACCACGAAGCCTCAGA
ACCAGATGCAGAGTTGACTCCTTTTGGATATTGTAATCGGCTAGAGTACG
GCCATCCTCAAGTTGCTTCCCAGCGAAGATAAGTCTCTGCTGGTCCGGC
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