FC921880

Overview
NameFC921880
Unique NameFC921880
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length184
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3699 contig Csv1_Contig3699:297..480. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC921880 vs. ExPASy Swiss-Prot
Match: BAMT_ANTMA (Benzoate carboxyl methyltransferase OS=Antirrhinum majus GN=BAMT PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.751e-12
Identity = 34/59 (57.63%), Postives = 40/59 (67.80%), Query Frame = -1 
Query:    8 LNDLPGNDFNTLFKGLSSFADRYNDASLFMMGAPGSFYGRLFPTNSLQLAHSSYGVHWL 184
            LNDLP NDFN LFK LS     + + + F+ G PGSFYGRL P  SL  A+SSY +HWL
Sbjct:   99 LNDLPDNDFNNLFKLLS-----HENGNCFVYGLPGSFYGRLLPKKSLHFAYSSYSIHWL 152
[Close]
BLAST of FC921880 vs. ExPASy Swiss-Prot
Match: JMT_ARATH (Jasmonate O-methyltransferase OS=Arabidopsis thaliana GN=JMT PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.634e-11
Identity = 34/71 (47.89%), Postives = 38/71 (53.52%), Query Frame = -1 
Query:    8 LNDLPGNDFNTLFKGLSSFADRYND------------ASLFMMGAPGSFYGRLFPTNSLQLAHSSYGVHWL 184
            LNDLP NDFN +   L  F DR N+             S F+   PGSFYGRLFP  SL   HSS  +HWL
Sbjct:   95 LNDLPSNDFNYICASLPEFYDRVNNNKEGLGFGRGGGESCFVSAVPGSFYGRLFPRRSLHFVHSSSSLHWL 165
The following BLAST results are available for this feature:
BLAST of FC921880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
BAMT_ANTMA1.751e-1257.63Benzoate carboxyl methyltransferase OS=Antirrhinum... [more]
JMT_ARATH5.634e-1147.89Jasmonate O-methyltransferase OS=Arabidopsis thali... [more]
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Properties
Property NameValue
Genbank descriptionC06053E01T7 RindPdigS Citrus sinensis cDNA clone C06053E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921880 ID=FC921880; Name=FC921880; organism=Citrus sinensis; type=EST; length=184bp
CCTTACAGAGCCAATGGACCCCATAGGAGGAATGAGCAAGCTGCAAGCTG
TTGGTCGGGAAAAGCCGGCCATAGAAAGAACCAGGAGCCCCCATCATAAA
CAGTGACGCATCATTATATCTATCAGCAAAGCTGGAGAGTCCCTTAAACA
GTGTGTTAAAATCGTTACCCGGCAAATCATTCAA
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