CX676403

Overview
NameCX676403
Unique NameCX676403
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676403 vs. ExPASy Swiss-Prot
Match: SOSSB_DICDI (SOSS complex subunit B homolog OS=Dictyostelium discoideum GN=DDB_G0279223 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.601e-15
Identity = 51/125 (40.80%), Postives = 70/125 (56.00%), Query Frame = 2
Query:  161 VNMISLKDLSPAAQNNINTKFIVLDK-MKTAAMEGQNKTCLALVADETAAVHFQFWQDECDAFEPGDILRLTNGIFSYVRKSLVLRAGKRGSVQKIGEYTMAFVETPNMSEIRWVPH--PNDSHN 526
            +N+I + ++ P ++N IN  FIVLDK   T   EG       LVAD TA+++   W    +  +PGDILRL  G  +   + L L  GK G ++KIGE+T  FVE PN+S   W  H  PN+  N
Sbjct:    1 MNLIKVNEIKPYSKN-INCVFIVLDKGPPTKKKEGT--IYQVLVADSTASINMTVWDALGEQIQPGDILRLKGGYSNIYIELLNLYVGKTGIIEKIGEFTFPFVEAPNLSSTLWNVHQDPNNPKN 122          
BLAST of CX676403 vs. ExPASy Swiss-Prot
Match: SOSB1_RAT (SOSS complex subunit B1 OS=Rattus norvegicus GN=Obfc2b PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.686e-14
Identity = 43/121 (35.54%), Postives = 66/121 (54.55%), Query Frame = 2
Query:  176 LKDLSPAAQNNINTKFIVLDKMKTAAMEGQNKTCLALVADETAAVHFQFWQDECDAFEPGDILRLTNGIFSYVRKSLVLRAGKRGSVQKIGEYTMAFVETPNMSEIRWVPHPNDSHNKYVQ 538
            +KD+ P  +N +N  FIVL+  +    +  ++     VAD+T +++   W D  +  +PGDI+RLT G  S  +  L L  G+ G +QKIGE+ M + E PN SE     +   + NK VQ
Sbjct:    7 VKDIKPGLKN-LNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQPGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNPEYNTQQASNKSVQ 126          
BLAST of CX676403 vs. ExPASy Swiss-Prot
Match: SOSB1_MOUSE (SOSS complex subunit B1 OS=Mus musculus GN=Obfc2b PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.686e-14
Identity = 43/123 (34.96%), Postives = 67/123 (54.47%), Query Frame = 2
Query:  176 LKDLSPAAQNNINTKFIVLDKMKTAAMEGQNKTCLALVADETAAVHFQFWQDECDAFEPGDILRLTNGIFSYVRKSLVLRAGKRGSVQKIGEYTMAFVETPNMSEIRWVPHPNDSHNKYVQES 544
            +KD+ P  +N +N  FIVL+  +    +  ++     VAD+T +++   W D  +  +PGDI+RLT G  S  +  L L  G+ G +QKIGE+ M + E PN SE     +   + NK VQ +
Sbjct:    7 VKDIKPGLKN-LNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQPGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNPEYNTQQAPNKSVQNN 128          
BLAST of CX676403 vs. ExPASy Swiss-Prot
Match: SOSB1_BOVIN (SOSS complex subunit B1 OS=Bos taurus GN=OBFC2B PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.202e-14
Identity = 45/136 (33.09%), Postives = 71/136 (52.21%), Query Frame = 2
Query:  176 LKDLSPAAQNNINTKFIVLDKMKTAAMEGQNKTCLALVADETAAVHFQFWQDECDAFEPGDILRLTNGIFSYVRKSLVLRAGKRGSVQKIGEYTMAFVETPNMSEIRWVPHPNDSHNKYVQESVISSHSRIFPPMP 583
            +KD+ P  +N +N  FIVL+  +    +  ++     VAD+T +++   W D  +  +PGDI+RLT G  S  +  L L  G+ G +QKIGE+ M + E PN SE    P+P  S  +   ++V +      P  P
Sbjct:    7 VKDIKPGLKN-LNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQPGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSE----PNPEYSAQQAPNKTVQNDSGPAAPQPP 137          
BLAST of CX676403 vs. ExPASy Swiss-Prot
Match: SOSB1_HUMAN (SOSS complex subunit B1 OS=Homo sapiens GN=OBFC2B PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.875e-14
Identity = 45/130 (34.62%), Postives = 68/130 (52.31%), Query Frame = 2
Query:  176 LKDLSPAAQNNINTKFIVLDKMKTAAMEGQNKTCLALVADETAAVHFQFWQDECDAFEPGDILRLTNGIFSYVRKSLVLRAGKRGSVQKIGEYTMAFVETPNMSEIRWVPHPNDSHNKYVQESVISSHSR 565
            +KD+ P  +N +N  FIVL+  +    +  ++     VAD+T +++   W D  +  +PGDI+RLT G  S  +  L L  G+ G +QKIGE+ M + E PN SE         + NK VQ     S S+
Sbjct:    7 VKDIKPGLKN-LNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQPGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNPEYSTQQAPNKAVQNDSNPSASQ 135          
BLAST of CX676403 vs. ExPASy Swiss-Prot
Match: SOSB1_XENTR (SOSS complex subunit B1 OS=Xenopus tropicalis GN=obfc2b PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.366e-14
Identity = 48/143 (33.57%), Postives = 74/143 (51.75%), Query Frame = 2
Query:  176 LKDLSPAAQNNINTKFIVLDKMKTAAMEGQNKTCLALVADETAAVHFQFWQDECDAFEPGDILRLTNGIFSYVRKSLVLRAGKRGSVQKIGEYTMAFVETPNMSEIRWVPHP----NDSHNKYVQE---SVISSHSRIFPPMP 583
            +KD+ P  +N ++  FIVL+  +    +  ++     VAD+T +++   W D  +  +PGDI+RLT G  S  +  L L  G+ G +QKIGE+ M + E PN SE    P+P      S NK  Q    +  +SH+   P  P
Sbjct:    7 VKDVKPGLKN-LSVLFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDLGNFIQPGDIIRLTKGYASLFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSE----PNPEYIAQQSQNKQAQAESGTGTNSHNSSSPAPP 144          
BLAST of CX676403 vs. ExPASy Swiss-Prot
Match: SOSSB_DROME (SOSS complex subunit B homolog OS=Drosophila melanogaster GN=CG5181 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.434e-13
Identity = 45/110 (40.91%), Postives = 57/110 (51.82%), Query Frame = 2
Query:  161 VNMISLKDLSPAAQNNINTKFIVLDKMKTAAMEGQNKTCLALVADETAAVHFQFWQDECDAFEPGDILRLTNGIFSYVRKSLVLRAGKRGSVQKIGEYTMAFVETPNMSE 490
            V  I +KD+ P  +N IN  FIVL+       +   +     V D TA ++   W +      PGDI+RLT G  S  R  L L +GK G V KIGEY M F E+ NMSE
Sbjct:    4 VECIPIKDIKPGLKN-INVIFIVLEVGVATVTKENREVRNFKVGDPTACINVSIWDEPGKLIAPGDIVRLTKGYASIWRHCLTLYSGKNGEVFKIGEYCMVFNESVNMSE 112          
BLAST of CX676403 vs. ExPASy Swiss-Prot
Match: SOB1B_XENLA (SOSS complex subunit B1-B OS=Xenopus laevis GN=obfc2b-B PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.152e-13
Identity = 41/121 (33.88%), Postives = 63/121 (52.07%), Query Frame = 2
Query:  176 LKDLSPAAQNNINTKFIVLDKMKTAAMEGQNKTCLALVADETAAVHFQFWQDECDAFEPGDILRLTNGIFSYVRKSLVLRAGKRGSVQKIGEYTMAFVETPNMSEIRWVPHPNDSHNKYVQ 538
            +KD+ P  +N ++  FIVL+  +    +  ++     VAD+T  ++   W +  +  +PGDI+RLT G  S  +  L L  G+ G +QKIGE+ M + E PN SE         S NK  Q
Sbjct:    7 VKDVKPGLKN-LSVLFIVLETGRVTKTKDGHEVRTCKVADKTGTINISVWDEVGNFIQPGDIIRLTKGYASLFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNPEYTAQQSQNKQAQ 126          
BLAST of CX676403 vs. ExPASy Swiss-Prot
Match: SOSB2_BOVIN (SOSS complex subunit B2 OS=Bos taurus GN=OBFC2A PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.250e-13
Identity = 44/136 (32.35%), Postives = 72/136 (52.94%), Query Frame = 2
Query:  176 LKDLSPAAQNNINTKFIVLDKMKTAAMEGQNKTCLALVADETAAVHFQFWQDECDAFEPGDILRLTNGIFSYVRKSLVLRAGKRGSVQKIGEYTMAFVETPNMSEIRWVPHPN-------DSHNKYVQESVISSHS 562
            +KD+ P  +N +N  FIVL+  +    +  ++     VAD+T ++    W +     +PGDI+RLT G  S  +  L L  G+ G +QKIGE+ M + E PN SE    P+P+        +HN+    S+ +S++
Sbjct:   11 IKDIKPGLKN-LNVVFIVLEIGRVTKTKDGHEVRSCKVADKTGSITISVWDEIGGLIQPGDIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSELPNFSE----PNPDYRGQQNKGAHNEQKNNSMNNSNN 141          
BLAST of CX676403 vs. ExPASy Swiss-Prot
Match: SOSB2_HUMAN (SOSS complex subunit B2 OS=Homo sapiens GN=OBFC2A PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.208e-12
Identity = 40/116 (34.48%), Postives = 64/116 (55.17%), Query Frame = 2
Query:  167 MISLKDLSPAAQNNINTKFIVLDKMKTAAMEGQNKTCLALVADETAAVHFQFWQDECDAFEPGDILRLTNGIFSYVRKSLVLRAGKRGSVQKIGEYTMAFVETPNMSEIRWVPHPN 514
            +I ++D+ P  +N +N  FIVL+  +    +  ++     VAD+T ++    W +     +PGDI+RLT G  S  +  L L  G+ G +QKIGE+ M + E PN SE    P+P+
Sbjct:    8 LIFIRDIKPGLKN-LNVVFIVLEIGRVTKTKDGHEVRSCKVADKTGSITISVWDEIGGLIQPGDIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSE----PNPD 118          
The following BLAST results are available for this feature:
BLAST of CX676403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
SOSSB_DICDI2.601e-1540.80SOSS complex subunit B homolog OS=Dictyostelium di... [more]
SOSB1_RAT1.686e-1435.54SOSS complex subunit B1 OS=Rattus norvegicus GN=Ob... [more]
SOSB1_MOUSE1.686e-1434.96SOSS complex subunit B1 OS=Mus musculus GN=Obfc2b ... [more]
SOSB1_BOVIN2.202e-1433.09SOSS complex subunit B1 OS=Bos taurus GN=OBFC2B PE... [more]
SOSB1_HUMAN2.875e-1434.62SOSS complex subunit B1 OS=Homo sapiens GN=OBFC2B ... [more]
SOSB1_XENTR8.366e-1433.57SOSS complex subunit B1 OS=Xenopus tropicalis GN=o... [more]
SOSSB_DROME2.434e-1340.91SOSS complex subunit B homolog OS=Drosophila melan... [more]
SOB1B_XENLA4.152e-1333.88SOSS complex subunit B1-B OS=Xenopus laevis GN=obf... [more]
SOSB2_BOVIN9.250e-1332.35SOSS complex subunit B2 OS=Bos taurus GN=OBFC2A PE... [more]
SOSB2_HUMAN1.208e-1234.48SOSS complex subunit B2 OS=Homo sapiens GN=OBFC2A ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_69D10_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-69D10-G19-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676403 ID=CX676403; Name=CX676403; organism=Citrus sinensis; type=EST; length=709bp
ATTGAGATCCCAGGCATGCGTGTTTTATAGTTTTGTGTTAAAACGAAACT
AACAGGGGGGGTGCTTGGAGTCAGAACAGCCGACCATTCCTCAGATGTTT
GTAGAAATGACTGAATGAAAATAGAAACTCTGTTTTAGCTGCAGGTAACA
AAGGCTGGCCGTGAATATGATTTCTCTGAAAGACTTATCACCAGCAGCTC
AAAACAACATAAACACAAAGTTCATAGTTCTCGACAAAATGAAGACCGCA
GCAATGGAAGGGCAGAACAAGACCTGCTTAGCGCTGGTGGCTGACGAAAC
GGCTGCCGTTCACTTCCAGTTCTGGCAAGACGAGTGTGATGCATTTGAGC
CTGGTGATATTTTACGCTTGACTAATGGCATATTTTCTTACGTCAGAAAA
AGTCTCGTGCTGAGAGCAGGCAAGAGAGGCAGCGTCCAGAAAATTGGAGA
GTACACAATGGCATTTGTGGAGACGCCAAACATGAGTGAGATTCGTTGGG
TTCCTCATCCCAATGATTCCCACAATAAGTATGTGCAGGAATCTGTTATT
TCTTCTCATTCGCGTATTTTCCCTCCAATGCCTTGAATGTCATGTCATCA
TCAGTCCCTTTAATGATTCTTCTCAATTAAAAGTCAAAAAGAGTTTGATT
GTACTTTCACTTCTATTTCTTTGAATCAATCAACATCTACTTAGTTTTAT
CAAAAAAAA
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