CX676401

Overview
NameCX676401
Unique NameCX676401
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length825
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676401 vs. ExPASy Swiss-Prot
Match: STS3_ARATH (Strictosidine synthase 3 OS=Arabidopsis thaliana GN=SS3 PE=2 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 8.458e-27
Identity = 70/165 (42.42%), Postives = 97/165 (58.79%), Query Frame = 3
Query:  339 GPESMAFDPLGRGPYTGVADGRILFWDGLK-WTDFA-FTSNNRSELCNPKPIAMSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDID-DEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLL 824
            GPE+ AFD  G+G YTGV  G+IL +   K + DFA  T++++S LC+          N   CGRP G+ F+ KTGDLY+ADA  GL  +   GGLA  +A    G P  F + LD+D   G VYFT  S+ +  R+ ++ V + + TG+  KYDP+ K  TVL+
Sbjct:   40 GPEAFAFDSTGKGFYTGVTGGKILKYLPKKGYVDFAQITNSSKSSLCD----GALGTTNVEKCGRPAGIAFNTKTGDLYVADAALGLHVIPRRGGLAKKIADSVGGKPFLFLDGLDVDPTTGVVYFTSFSSTFGPRDVLKAVATKDSTGKFFKYDPSKKVVTVLM 200          
BLAST of CX676401 vs. ExPASy Swiss-Prot
Match: STS1_ARATH (Strictosidine synthase 1 OS=Arabidopsis thaliana GN=SS1 PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 7.160e-26
Identity = 68/165 (41.21%), Postives = 97/165 (58.79%), Query Frame = 3
Query:  339 GPESMAFDPLGRGPYTGVADGRIL-FWDGLKWTDFA-FTSNNRSELCNPKPIAMSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDID-DEGNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLL 824
            GPE+ AFD  G+G YTGV+ G+IL +     + DFA  T ++ S  C+   I  +       CGRP G+ F++KTGDLY+ADA  GL  + P GGLAT +    +G P +F + LD+D   G VYFT  S+ +     +  +   + TG++ KYDP+TK  TVL+
Sbjct:   38 GPEAFAFDSTGKGFYTGVSGGKILKYLPETGYVDFAQITESSNSSWCDGT-IGTALAGR---CGRPAGIAFNEKTGDLYVADAPLGLHVISPAGGLATKITDSVDGKPFKFLDGLDVDPTTGVVYFTSFSSRFSPIQVLIALGLKDATGKLYKYDPSTKVVTVLM 198          
BLAST of CX676401 vs. ExPASy Swiss-Prot
Match: STSY_RAUSE (Strictosidine synthase OS=Rauvolfia serpentina GN=STR1 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.595e-25
Identity = 65/165 (39.39%), Postives = 96/165 (58.18%), Query Frame = 3
Query:  342 PESMAFDPLGRGPYTGVADGRILFWDGLK--WTDFAFTSNNRSE-LCNPKPIAMSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDE-GNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLL 824
            P S  FD   +G YT V DGR++ ++G    + DFA+ S   ++  C     A    +   +CGR   + ++ +   LYI D Y+ L  VG EGG AT LAT  +GVP ++   + +D   G VYFTD ST Y  R   Q++ +++ TGR++KYDP+TK+TT+LL
Sbjct:   43 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDA----EKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLL 203          
BLAST of CX676401 vs. ExPASy Swiss-Prot
Match: STSY_RAUMA (Strictosidine synthase (Fragment) OS=Rauvolfia mannii GN=STR1 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.595e-25
Identity = 65/165 (39.39%), Postives = 96/165 (58.18%), Query Frame = 3
Query:  342 PESMAFDPLGRGPYTGVADGRILFWDGLK--WTDFAFTSNNRSE-LCNPKPIAMSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAEGVPLRFTNDLDIDDE-GNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLL 824
            P S  FD   +G YT V DGR++ ++G    + DFA+ S   ++  C     A    +   +CGR   + ++ +   LYI D Y+ L  VG EGG AT LAT  +GVP ++   + +D   G VYFTD ST Y  R   Q++ +++ TGR++KYDP+TK+TT+LL
Sbjct:   41 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDA----EKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLL 201          
BLAST of CX676401 vs. ExPASy Swiss-Prot
Match: APMAP_SALSA (Adipocyte plasma membrane-associated protein OS=Salmo salar GN=apmap PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.554e-25
Identity = 74/179 (41.34%), Postives = 101/179 (56.42%), Query Frame = 3
Query:  300 LQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIAMSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAE---GVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLL 824
            L+ ++  F +Q+ GPES+A    G   YTG ADG+I+  +G   T  A            KP      + E  CGRPLG+R     G L++ADAY GL KV P  G  T+L +  +   G  L F NDLD+  +G  VYFTDSS+ +QRR+++ L+  A   GRVL+YD  TK+ TVL+
Sbjct:   87 LREAQRLFEDQLVGPESIA--NFGDLIYTGTADGKIVKIEGKSITVIARLG---------KPPCDGSREQEPSCGRPLGIRVGPN-GTLFVADAYLGLFKVNPVTGEVTNLVSAGQMVGGRRLSFVNDLDVTQDGRKVYFTDSSSRWQRRDYLHLIMEATADGRVLEYDTETKEVTVLM 253          
BLAST of CX676401 vs. ExPASy Swiss-Prot
Match: APMAP_DANRE (Adipocyte plasma membrane-associated protein OS=Danio rerio GN=apmap PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.929e-24
Identity = 72/179 (40.22%), Postives = 99/179 (55.31%), Query Frame = 3
Query:  300 LQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIAMSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGGLATSLATEAE---GVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLL 824
            L+ +E  F  ++ GPES+A   +G   YTG ADG+I+  +G           N   L           ++EH CGRPLG+R     G L++ADAY GL +V P  G   SL +  +   G  L F NDLD+  +G  VYFTDSS+ +QRR+FM L+  A   GRVL+YD  TK+  V++
Sbjct:   87 LRQAERLFEERLVGPESLA--NIGDVFYTGTADGKIVKIEG----------RNIHVLATIGKPPCGSREHEHTCGRPLGIRVGPN-GTLFVADAYLGLFEVNPVTGEVKSLVSTEKRIAGRRLGFVNDLDVTQDGKKVYFTDSSSRWQRRDFMHLIMEATADGRVLEYDTETKEVNVMM 252          
BLAST of CX676401 vs. ExPASy Swiss-Prot
Match: APMAP_HUMAN (Adipocyte plasma membrane-associated protein OS=Homo sapiens GN=APMAP PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 3.326e-23
Identity = 85/230 (36.96%), Postives = 119/230 (51.74%), Query Frame = 3
Query:  147 FLGLVILLLAMYCGLDPLKHSAISEFPDFVSHKVDMPPWSLIPTVKDDKNLLQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIAMSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGP---EGGLATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLL 824
            FL L + L     G   L  S I   P  +S K   PP  L+  V      L+ +E  F NQ+ GPES+A   +G   +TG ADGR++    L+  +    +   S  C  +        +E +CGRPLG+R     G L++ADAY GL +V P   E  L  S  T  EG  + F NDL +  +G  +YFTDSS+ +QRR+++ LV    D GR+L+YD  T++  VLL
Sbjct:   43 FLMLAVSLTVPLLGAMMLLESPIDPQP--LSFKE--PP--LLLGVLHPNTKLRQAERLFENQLVGPESIAH--IGDVMFTGTADGRVV---KLENGEIETIARFGSGPCKTRD-------DEPVCGRPLGIRAGPN-GTLFVADAYKGLFEVNPWKREVKLLLSSETPIEGKNMSFVNDLTVTQDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTREVKVLL 253          
BLAST of CX676401 vs. ExPASy Swiss-Prot
Match: APMAP_CHICK (Adipocyte plasma membrane-associated protein OS=Gallus gallus GN=APMAP PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.677e-23
Identity = 74/194 (38.14%), Postives = 105/194 (54.12%), Query Frame = 3
Query:  255 PPWSLIPTVKDDKNLLQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIAMSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGG---LATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLL 824
            PP  L+  V +  N LQ +E  + NQ+ GPES+    +G   +TG ADG+IL  +  +    A   +     C          ++E  CGRPLG+R       L++ADAY+GL +V P  G   +  S  T  EG  L F NDL +  +G  +YFTDSS+ +QRR+F+ LV    D GR+L+YD  TK+  VL+
Sbjct:   74 PP--LLTGVLEPNNKLQKAERLWENQLVGPESIV--NIGDVLFTGTADGKILKIEDGEVQTVARIGHGP---CGTP-------EDEPTCGRPLGIRVGPNN-TLFVADAYYGLYEVNPGTGETKMLVSTKTLIEGQKLSFLNDLTVTQDGRKIYFTDSSSKWQRRDFLFLVMEGTDDGRLLEYDTVTKEVKVLM 252          
BLAST of CX676401 vs. ExPASy Swiss-Prot
Match: APMAP_MOUSE (Adipocyte plasma membrane-associated protein OS=Mus musculus GN=Apmap PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.816e-22
Identity = 80/228 (35.09%), Postives = 116/228 (50.88%), Query Frame = 3
Query:  156 LVILLLAMYCGLDPLKHSAISEFP-DFVSHKVDMPPWSLIPTVKDDKNLLQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIAMSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGG---LATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLL 824
            +  L+LA+   +  L    + E P D  S     PP+     V      L+ +E  F NQ+ GPES+    +G   +TG ADGR++    L+  +    +   S  C  +        +E  CGRPLG+R     G L++ DAY GL +V P+     L  S  T  EG  + F NDL +  +G  +YFTDSS+ +QRR+++ LV  A D GR+L+YD  TK+  VLL
Sbjct:   40 MTFLMLAVSLAIPLLGAMMLLESPIDPQSFSFKEPPFMF--GVLHPNTKLRQAERLFENQLSGPESIV--NIGDVLFTGTADGRVV---KLENGEIETIARFGSGPCKTRD-------DEPTCGRPLGIRAGPN-GTLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVNDLTVTRDGRKIYFTDSSSKWQRRDYLLLVMEATDDGRLLEYDTVTKEVKVLL 252          
BLAST of CX676401 vs. ExPASy Swiss-Prot
Match: APMAP_RAT (Adipocyte plasma membrane-associated protein OS=Rattus norvegicus GN=Apmap PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 3.677e-22
Identity = 80/228 (35.09%), Postives = 115/228 (50.44%), Query Frame = 3
Query:  156 LVILLLAMYCGLDPLKHSAISEFP-DFVSHKVDMPPWSLIPTVKDDKNLLQNSEIKFLNQIQGPESMAFDPLGRGPYTGVADGRILFWDGLKWTDFAFTSNNRSELCNPKPIAMSYLKNEHICGRPLGLRFDKKTGDLYIADAYFGLMKVGPEGG---LATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLL 824
            +  L+LA+   +  L    + E P D  S     PP+     V      L+ +E  F NQ+ GPES+    +G   +TG ADGR++    L+  +    +   S  C  +        +E  CGRPLG+R     G L++ DAY GL +V P+     L  S  T  EG  + F NDL I  +G  +YFTDSS+ +QRR+++ LV    D GR+L+YD  TK+  VLL
Sbjct:    1 MTFLMLAVSLAIPLLGAMMLLESPIDPQSFSFKEPPFMF--GVLQPNTKLRQAERLFENQLNGPESIV--NIGDVLFTGTADGRVV---KLENGEIETIARFGSGPCKTRD-------DEPTCGRPLGIRVGPN-GTLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVNDLTITRDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTKEVKVLL 213          
The following BLAST results are available for this feature:
BLAST of CX676401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
STS3_ARATH8.458e-2742.42Strictosidine synthase 3 OS=Arabidopsis thaliana G... [more]
STS1_ARATH7.160e-2641.21Strictosidine synthase 1 OS=Arabidopsis thaliana G... [more]
STSY_RAUSE1.595e-2539.39Strictosidine synthase OS=Rauvolfia serpentina GN=... [more]
STSY_RAUMA1.595e-2539.39Strictosidine synthase (Fragment) OS=Rauvolfia man... [more]
APMAP_SALSA3.554e-2541.34Adipocyte plasma membrane-associated protein OS=Sa... [more]
APMAP_DANRE3.929e-2440.22Adipocyte plasma membrane-associated protein OS=Da... [more]
APMAP_HUMAN3.326e-2336.96Adipocyte plasma membrane-associated protein OS=Ho... [more]
APMAP_CHICK9.677e-2338.14Adipocyte plasma membrane-associated protein OS=Ga... [more]
APMAP_MOUSE2.816e-2235.09Adipocyte plasma membrane-associated protein OS=Mu... [more]
APMAP_RAT3.677e-2235.09Adipocyte plasma membrane-associated protein OS=Ra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_69D08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-69D08-G15-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676401 ID=CX676401; Name=CX676401; organism=Citrus sinensis; type=EST; length=825bp
TTTCAACAAAACTGAACCAGTTTTCAACAAACTGTACACTTATAACAACA
ACATATAAAACAAAAGAAACACTCAGTCCGTTATTGTTACAATGCATTAA
TCTTTTATGAGTCTTTTTGTTTTATTTAGCAATGACGCCTAGAGGATTTT
TGGGGTTGGTGATTTTGCTTCTGGCCATGTACTGTGGCCTCGACCCTTTG
AAGCACAGTGCGATTTCTGAGTTCCCTGACTTTGTGTCTCACAAAGTTGA
CATGCCGCCGTGGTCACTGATTCCTACAGTGAAAGATGACAAGAACTTGC
TTCAGAATTCGGAAATCAAGTTCTTGAACCAAATTCAGGGCCCCGAGAGC
ATGGCTTTTGACCCTCTTGGCCGTGGACCTTATACTGGTGTTGCTGATGG
CAGAATTCTCTTCTGGGATGGCCTTAAATGGACTGATTTTGCTTTTACTT
CCAACAACAGGTCGGAACTATGTAATCCGAAACCAATTGCCATGAGTTAT
CTGAAGAATGAGCACATCTGTGGCAGGCCTTTGGGGCTCCGATTTGACAA
GAAAACTGGTGATTTATACATTGCAGATGCATATTTTGGTCTGATGAAGG
TCGGTCCGGAAGGTGGATTGGCAACATCACTTGCAACTGAAGCAGAAGGT
GTGCCACTGAGGTTCACTAATGATCTAGACATTGATGATGAAGGGAATGT
TTACTTTACTGACAGCAGCACCAATTATCAGAGGCGGAATTTCATGCAGT
TGGTTTTCTCTGCAGAAGATACTGGTAGGGTTCTAAAGTATGATCCAACT
ACAAAACAGACCACTGTCCTTTTGA
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