CX676400

Overview
NameCX676400
Unique NameCX676400
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length841
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676400 vs. ExPASy Swiss-Prot
Match: APMAP_MOUSE (Adipocyte plasma membrane-associated protein OS=Mus musculus GN=Apmap PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.384e-32
Identity = 77/225 (34.22%), Postives = 124/225 (55.11%), Query Frame = -1
Query:  170 LATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-ILPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFVLKLPISAKTHYLIHIGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFV 838
            L  S  T  EG  + F NDL +  +G  +YFTDSS+ +QRR+++ LV  A D GR+L+YD  TK+  VLL  LQFPNG+ LS ++ F +  E ++ R+ + ++ G   G  + F   +PG+PDN+R +  G +WVA    R+     M  +   + F+ ++     +   +      +++ ++ S  G   + L D  G+VV  +SE  E DG L++GS   PF+
Sbjct:  183 LLLSSETPIEGKKMSFVNDLTVTRDGRKIYFTDSSSKWQRRDYLLLVMEATDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLSPEEDFVLVAETTMARIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWVAAATIRANPGFSMLDFLSDKPFIKRMIFKMFSQETVMKFVPRYSLVLEVSDSGAFRRSLHDPDGQVVTYVSEAHEHDGYLYLGSFRSPFI 407          
BLAST of CX676400 vs. ExPASy Swiss-Prot
Match: APMAP_RAT (Adipocyte plasma membrane-associated protein OS=Rattus norvegicus GN=Apmap PE=2 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 3.083e-32
Identity = 77/225 (34.22%), Postives = 123/225 (54.67%), Query Frame = -1
Query:  170 LATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-ILPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFVLKLPISAKTHYLIHIGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFV 838
            L  S  T  EG  + F NDL I  +G  +YFTDSS+ +QRR+++ LV    D GR+L+YD  TK+  VLL  LQFPNG+ LS ++ F +  E ++ R+ + ++ G   G  + F   +PG+PDN+R +  G +WVA    R+     M  +   + F+ ++     +   +      +++ ++ S  G   + L D  G+VV  +SE  E DG L++GS   PF+
Sbjct:  144 LLLSSETPIEGKKMSFVNDLTITRDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLSPEEDFVLVAETAMARIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWVAAATIRANPGFSMLDFLSDKPFIKRMIFKLFSQETVMKFVPRYSLVLEVSDSGAFRRSLHDPDGQVVTYVSEAHEHDGYLYLGSFRSPFI 368          
BLAST of CX676400 vs. ExPASy Swiss-Prot
Match: APMAP_SALSA (Adipocyte plasma membrane-associated protein OS=Salmo salar GN=apmap PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.610e-31
Identity = 77/235 (32.77%), Postives = 126/235 (53.62%), Query Frame = -1
Query:  152 GLATSLATEAE---GVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-ILPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFVLKLPISAKTHYLIHIGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDLS 841
            G  T+L +  +   G  L F NDLD+  +G  VYFTDSS+ +QRR+++ L+  A   GRVL+YD  TK+ TVL+ NL+F NG+ L  D+   +  E ++ R+ +  + G   G ++ F   LPG+PDN+R +  G +WVA+   R      M  +   + ++ KL     +  ++      +++ ++    G  ++   D  G V   +SE  E DG L++GS   P++   DLS
Sbjct:  180 GEVTNLVSAGQMVGGRRLSFVNDLDVTQDGRKVYFTDSSSRWQRRDYLHLIMEATADGRVLEYDTETKEVTVLMENLRFANGIQLFPDEESVLVAETTMARIRRVHVSGLNKGGMDTFVDNLPGFPDNIRRSSSGGYWVAMSAVRPNPGFSMLDFLSQKPWIKKLIFKLFSQDVLMKFVPRYSLVIELQESGACMRSFHDPHGMVAAYVSEAHEHDGHLYLGSFRSPYLCKLDLS 414          
BLAST of CX676400 vs. ExPASy Swiss-Prot
Match: APMAP_BOVIN (Adipocyte plasma membrane-associated protein OS=Bos taurus GN=APMAP PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.813e-31
Identity = 75/225 (33.33%), Postives = 126/225 (56.00%), Query Frame = -1
Query:  170 LATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-ILPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFVLKLPISAKTHYLIHIGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFV 838
            L  S  T  EG  + F NDL +  +G  +YFTDSS+ +QRR+++ L+    D GR+L+YD  TK+  VLL +L+FPNG+ LS  + F +  E ++ R+ ++++ G   G  + F   LPG+PDN+R +  G +WV++   R+     M  +   R F+ K+     +   +      +++ ++ S  G  L+ L D +G+VV  +SE  E  G L++GS   P++
Sbjct:  183 LLLSSETPIEGRKMSFLNDLTVTRDGRKIYFTDSSSKWQRRDYLLLLMEGTDDGRLLEYDTQTKEVKVLLDHLRFPNGVQLSPAEDFVLVVELAMVRIRRFYVSGLMKGGADVFVENLPGFPDNIRASSSGGYWVSMAAIRANPGFSMLDFLSERPFLKKVIFKLFSQETVMKFVPRYSLVLELSDSGTFLRSLHDPEGQVVTYVSEAHEHSGHLYLGSFRAPYL 407          
BLAST of CX676400 vs. ExPASy Swiss-Prot
Match: APMAP_DANRE (Adipocyte plasma membrane-associated protein OS=Danio rerio GN=apmap PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.768e-30
Identity = 76/221 (34.39%), Postives = 119/221 (53.85%), Query Frame = -1
Query:  152 GVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAF-AILPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFVLKLPISAKTHYLIHIGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDLS 808
            G  L F NDLD+  +G  VYFTDSS+ +QRR+FM L+  A   GRVL+YD  TK+  V++ NL+FPNG+ L  D+   +  E ++ R+ +  + G   G ++ F   LPG+PDN+R +  G +WVA+   R      M  +   R ++ KL     +   +      +++ V+   +G  ++   D +G V    SE  E  G L++GS   P++   DLS
Sbjct:  193 GRRLGFVNDLDVTQDGKKVYFTDSSSRWQRRDFMHLIMEATADGRVLEYDTETKEVNVMMENLRFPNGIQLFPDEESVLVAETTMARIKRVHVSGLNKGGMDTFIENLPGFPDNIRRSSSGGYWVAMSAVRPNPGFSMLDFLSQRPWLKKLIFKLFSQDTLLKFVPRYSLVVELQSDGTCVRSFHDPQGLVSAYSSEAHEYSGHLYLGSFRSPYLCKLDLS 413          
BLAST of CX676400 vs. ExPASy Swiss-Prot
Match: APMAP_HUMAN (Adipocyte plasma membrane-associated protein OS=Homo sapiens GN=APMAP PE=1 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 4.921e-30
Identity = 74/225 (32.89%), Postives = 120/225 (53.33%), Query Frame = -1
Query:  170 LATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-ILPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFVLKLPISAKTHYLIHIGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFV 838
            L  S  T  EG  + F NDL +  +G  +YFTDSS+ +QRR+++ LV    D GR+L+YD  T++  VLL  L+FPNG+ LS  + F +  E ++ R+ + ++ G   G  + F   +PG+PDN+R +  G +WV +   R      M  +   R ++ ++     +   +      +++ ++ S  G   + L D  G V   ISEV E DG L++GS   PF+
Sbjct:  184 LLLSSETPIEGKNMSFVNDLTVTQDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTREVKVLLDQLRFPNGVQLSPAEDFVLVAETTMARIRRVYVSGLMKGGADLFVENMPGFPDNIRPSSSGGYWVGMSTIRPNPGFSMLDFLSERPWIKRMIFKLFSQETVMKFVPRYSLVLELSDSGAFRRSLHDPDGLVATYISEVHEHDGHLYLGSFRSPFL 408          
BLAST of CX676400 vs. ExPASy Swiss-Prot
Match: APMAP_CHICK (Adipocyte plasma membrane-associated protein OS=Gallus gallus GN=APMAP PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.096e-29
Identity = 79/234 (33.76%), Postives = 121/234 (51.71%), Query Frame = -1
Query:  155 LATSLATEAEGVPLRFTNDLDIDDEGN-VYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFA-ILPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMALY----PKIRHFVLKLPISAKTHYLIHIGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVAVYDL 838
            +  S  T  EG  L F NDL +  +G  +YFTDSS+ +QRR+F+ LV    D GR+L+YD  TK+  VL+  L+FPNG+ LS  + F +  E ++ R+ +Y++ G   G  + F   +PG PDN+R +  G +WVA+   R      M  +    P I+  + KL        L+       ++ V+ S  G   +   D  G  V  +SE  E +G L++GS   PF+   +L
Sbjct:  183 MLVSTKTLIEGQKLSFLNDLTVTQDGRKIYFTDSSSKWQRRDFLFLVMEGTDDGRLLEYDTVTKEVKVLMVGLRFPNGVQLSPAEDFVLVLETAMARIRRYYVSGLMKGGADMFVENMPGLPDNIRLSSSGGYWVAMPVVRPNPGFSMLDFLSEKPWIKRMIFKLLSQETVTKLL----PKRSLVVELSETGSYRRSFHDPTGLTVPYVSEAHEHNGYLYLGSFRSPFICRLNL 412          
BLAST of CX676400 vs. ExPASy Swiss-Prot
Match: STSY_RAUSE (Strictosidine synthase OS=Rauvolfia serpentina GN=STR1 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.935e-26
Identity = 75/231 (32.47%), Postives = 114/231 (49.35%), Query Frame = -1
Query:  158 GLATSLATEAEGVPLRFTNDLDIDDE-GNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFVLKLPISAKTHYLIHIGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVA--VYD 841
            G AT LAT  +GVP ++   + +D   G VYFTD ST Y  R   Q++ +++ TGR++KYDP+TK+TT+LL+ L  P G  +S D SF +  E    ++ KYWL G K G  E    +P  P N++ N  G FWV                            S+      ++ GR+    +K+   G IL+V+        +   +++E DG L++G++    V   VYD
Sbjct:  133 GHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWV----------------------------SSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYD 334          
BLAST of CX676400 vs. ExPASy Swiss-Prot
Match: STSY_RAUMA (Strictosidine synthase (Fragment) OS=Rauvolfia mannii GN=STR1 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.935e-26
Identity = 75/231 (32.47%), Postives = 114/231 (49.35%), Query Frame = -1
Query:  158 GLATSLATEAEGVPLRFTNDLDIDDE-GNVYFTDSSTNYQRRNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFVLKLPISAKTHYLIHIGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVA--VYD 841
            G AT LAT  +GVP ++   + +D   G VYFTD ST Y  R   Q++ +++ TGR++KYDP+TK+TT+LL+ L  P G  +S D SF +  E    ++ KYWL G K G  E    +P  P N++ N  G FWV                            S+      ++ GR+    +K+   G IL+V+        +   +++E DG L++G++    V   VYD
Sbjct:  131 GHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWV----------------------------SSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYD 332          
BLAST of CX676400 vs. ExPASy Swiss-Prot
Match: STSY_CATRO (Strictosidine synthase OS=Catharanthus roseus GN=STR1 PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 2.366e-24
Identity = 75/233 (32.19%), Postives = 113/233 (48.50%), Query Frame = -1
Query:  158 GLATSLATEAEGVPLRFTNDLDIDDE-GNVYFTDSSTNYQR--RNFMQLVFSAEDTGRVLKYDPTTKQTTVLLRNLQFPNGLSLSKDKSFFVFCEGSVGRLHKYWLIGEKAGNLEAFAILPGYPDNVRTNEKGEFWVAIHCRRSLYSHLMALYPKIRHFVLKLPISAKTHYLIHIGGRLHAMAVKYSPEGKILQVLEDSKGKVVKAISEVEEKDGKLWMGSVLMPFVA--VYD 841
            G AT LAT  +GVP ++   + +D   G VYFTD S+ +        +++ +++ TGR++KYDP+TK+TT+LL+ L  P G  +S D SF V  E    R+ KYWL G K G+ E    +P  P N++ N  G FWV+         H                            GR+ +  +K+   G ILQV+        +   +++E DG L++GS+    V   VYD
Sbjct:  137 GYATQLATSVQGVPFKWLYAVTVDQRTGIVYFTDVSSIHDDSPEGVEEIMNTSDRTGRLMKYDPSTKETTLLLKELHVPGGAEISADGSFVVVAEFLSNRIVKYWLEGPKKGSAEFLVTIPN-PGNIKRNSDGHFWVSSSEELDGGQH----------------------------GRVVSRGIKFDGFGNILQVIPLPPPYEGEHFEQIQEHDGLLYIGSLFHSSVGILVYD 340          
The following BLAST results are available for this feature:
BLAST of CX676400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
APMAP_MOUSE1.384e-3234.22Adipocyte plasma membrane-associated protein OS=Mu... [more]
APMAP_RAT3.083e-3234.22Adipocyte plasma membrane-associated protein OS=Ra... [more]
APMAP_SALSA2.610e-3132.77Adipocyte plasma membrane-associated protein OS=Sa... [more]
APMAP_BOVIN5.813e-3133.33Adipocyte plasma membrane-associated protein OS=Bo... [more]
APMAP_DANRE3.768e-3034.39Adipocyte plasma membrane-associated protein OS=Da... [more]
APMAP_HUMAN4.921e-3032.89Adipocyte plasma membrane-associated protein OS=Ho... [more]
APMAP_CHICK1.096e-2933.76Adipocyte plasma membrane-associated protein OS=Ga... [more]
STSY_RAUSE1.935e-2632.47Strictosidine synthase OS=Rauvolfia serpentina GN=... [more]
STSY_RAUMA1.935e-2632.47Strictosidine synthase (Fragment) OS=Rauvolfia man... [more]
STSY_CATRO2.366e-2432.19Strictosidine synthase OS=Catharanthus roseus GN=S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_69D08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-69D08-G15-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676400 ID=CX676400; Name=CX676400; organism=Citrus sinensis; type=EST; length=841bp
TTTTTTTTTTTTTTTTTAAGAAGAAATTCTTGCCCTGTGCGTAACATTTT
CGATACTTTCAGGAAATAAAGAAAGTCAGTTAAAACGATCTATCTACCTC
CAGCGTAAAGAACAACAGCTTTTAATCATAAATAGACGTGCTTCTACCTC
AAGACAAGTCATAAACTGCAACAAAAGGCATCAACACACTGCCCATCCAC
AGCTTCCCGTCCTTCTCTTCAACTTCACTGATTGCTTTAACAACCTTCCC
CTTACTGTCCTCCAATACCTGCAAAATCTTTCCCTCTGGGCTGTATTTGA
CAGCCATAGCATGAAGCCTTCCCCCAATGTGAATCAGGTAATGAGTCTTG
GCTGAAATTGGGAGCTTGAGCACGAAATGCCTAATTTTAGGGTATAAAGC
CATCAGATGAGAGTACAAGCTCCGCCGACAGTGGATTGCCACCCAAAACT
CACCCTTTTCATTTGTGCGGACGTTGTCAGGATATCCTGGTAAGATGGCA
AATGCCTCTAAATTACCCGCTTTCTCACCTATCAACCAGTACTTGTGTAA
TCTGCCAACAGATCCTTCACAAAAGACAAAGAAGGATTTGTCCTTGCTCA
GGGAAAGCCCATTAGGGAATTGAAGATTCCTCAAAAGGACAGTGGTCTGT
TTTGTAGTTGGATCATACTTTAGAACCCTACCAGTATCTTCTGCAGAGAA
AACCAACTGCATGAAATTCCGCCTCTGATAATTGGTGCTGCTGTCAGTAA
AGTAAACATTCCCTTCATCATCAATGTCTAGATCATTAGTGAACCTCAGT
GGCACACCTTCTGCTTCAGTTGCAAGTGATGTTGCCAATCC
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