CX676398

Overview
NameCX676398
Unique NameCX676398
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length508
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676398 vs. ExPASy Swiss-Prot
Match: HSP72_SOLLC (Heat shock cognate 70 kDa protein 2 OS=Solanum lycopersicum GN=HSC-2 PE=2 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 2.919e-76
Identity = 144/169 (85.21%), Postives = 145/169 (85.80%), Query Frame = 1
Query:    1 DLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 507
            DLFRKCMEPVEKCLRDAKMDKS+VHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDE           ILSGEGNEKVQD             ETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV
Sbjct:  314 DLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 482          
BLAST of CX676398 vs. ExPASy Swiss-Prot
Match: HSP7E_SPIOL (Chloroplast envelope membrane 70 kDa heat shock-related protein OS=Spinacia oleracea GN=SCE70 PE=1 SV=3)

HSP 1 Score: 280.411 bits (716), Expect = 3.227e-75
Identity = 142/169 (84.02%), Postives = 143/169 (84.62%), Query Frame = 1
Query:    1 DLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 507
            DLFRKCMEPVEKCLRDAKMDKS+VHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDE           ILSGEGNEKVQD             ETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPP PRGVPQI V
Sbjct:  314 DLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPGPRGVPQINV 482          
BLAST of CX676398 vs. ExPASy Swiss-Prot
Match: HSP7C_PETHY (Heat shock cognate 70 kDa protein OS=Petunia hybrida GN=HSP70 PE=2 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 7.190e-75
Identity = 142/169 (84.02%), Postives = 143/169 (84.62%), Query Frame = 1
Query:    1 DLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 507
            DLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDE           ILSGEGNEKVQD             ETAGG MTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGER RT+DNNLLGKFELSGIPPAPRGVPQITV
Sbjct:  314 DLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGGMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELSGIPPAPRGVPQITV 482          
BLAST of CX676398 vs. ExPASy Swiss-Prot
Match: HSP71_ARATH (Heat shock cognate 70 kDa protein 1 OS=Arabidopsis thaliana GN=HSC70-1 PE=1 SV=3)

HSP 1 Score: 279.256 bits (713), Expect = 7.190e-75
Identity = 141/169 (83.43%), Postives = 143/169 (84.62%), Query Frame = 1
Query:    1 DLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 507
            DLFRKCMEPVEKCLRDAKMDKS+VHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDE           ILSGEGNEKVQD             ETAGGVMT LIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGER RT+DNNLLGKFELSGIPPAPRGVPQITV
Sbjct:  314 DLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQGAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTTLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELSGIPPAPRGVPQITV 482          
BLAST of CX676398 vs. ExPASy Swiss-Prot
Match: HSP72_ARATH (Heat shock cognate 70 kDa protein 2 OS=Arabidopsis thaliana GN=HSC70-2 PE=2 SV=2)

HSP 1 Score: 272.707 bits (696), Expect = 6.729e-73
Identity = 137/169 (81.07%), Postives = 142/169 (84.02%), Query Frame = 1
Query:    1 DLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 507
            DLFRKCMEPVEKCLRDAKMDKS+VH++VLVGGSTRIPKVQQLLQDFFNGKELCKSINPDE           ILSGEGNEKVQD             ETAGGVMT LI RNTTIPTKKEQVFSTYSDNQPGVLIQV+EGER RT+DNNLLGKFELSGIPPAPRGVPQITV
Sbjct:  314 DLFRKCMEPVEKCLRDAKMDKSTVHEIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTTLIQRNTTIPTKKEQVFSTYSDNQPGVLIQVFEGERARTKDNNLLGKFELSGIPPAPRGVPQITV 482          
BLAST of CX676398 vs. ExPASy Swiss-Prot
Match: HSP73_ARATH (Heat shock cognate 70 kDa protein 3 OS=Arabidopsis thaliana GN=HSC70-3 PE=1 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 1.958e-72
Identity = 138/169 (81.66%), Postives = 141/169 (83.43%), Query Frame = 1
Query:    1 DLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 507
            DLFRKCMEPVEKCLRDAKMDK+S+ DVVLVGGSTRIPKVQQLL DFFNGKELCKSINPDE           ILSGEGNEKVQD             ETAGGVMTVLI RNTTIPTKKEQVFSTYSDNQPGVLIQVYEGER RT+DNNLLGKFELSGIPPAPRGVPQITV
Sbjct:  314 DLFRKCMEPVEKCLRDAKMDKNSIDDVVLVGGSTRIPKVQQLLVDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIQRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELSGIPPAPRGVPQITV 482          
BLAST of CX676398 vs. ExPASy Swiss-Prot
Match: HSP70_SOYBN (Heat shock 70 kDa protein OS=Glycine max GN=HSP70 PE=3 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 3.692e-71
Identity = 132/169 (78.11%), Postives = 141/169 (83.43%), Query Frame = 1
Query:    1 DLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 507
            DLFRKCMEPVEKCLRDAK+DKS VH+VVLVGGSTRIPKV QLLQDFFNGKELCKSINPDE           ILSG+G+EKVQD             ETAGGVMTVLIPRNTTIPTKKEQ+FSTYSDNQPGVLIQV+EGER RT+DNNLLGKFEL+GIPPAPRGVPQ+ V
Sbjct:  313 DLFRKCMEPVEKCLRDAKIDKSQVHEVVLVGGSTRIPKVHQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGQGDEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVFEGERARTKDNNLLGKFELTGIPPAPRGVPQVNV 481          
BLAST of CX676398 vs. ExPASy Swiss-Prot
Match: HSP70_MAIZE (Heat shock 70 kDa protein OS=Zea mays GN=HSP70 PE=3 SV=2)

HSP 1 Score: 266.544 bits (680), Expect = 4.823e-71
Identity = 139/169 (82.25%), Postives = 141/169 (83.43%), Query Frame = 1
Query:    1 DLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 507
            DLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQL QDFFNGKELCKSINPDE           ILSGEGNE+  D             ETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGER RT+DNNLLGKFELSGIPPAPRGVPQITV
Sbjct:  312 DLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQL-QDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNER-SDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELSGIPPAPRGVPQITV 478          
BLAST of CX676398 vs. ExPASy Swiss-Prot
Match: HSP70_CHLRE (Heat shock 70 kDa protein OS=Chlamydomonas reinhardtii GN=HSP70 PE=2 SV=2)

HSP 1 Score: 264.618 bits (675), Expect = 1.833e-70
Identity = 134/169 (79.29%), Postives = 139/169 (82.25%), Query Frame = 1
Query:    1 DLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 507
            DLFRKCM+PVEKCL DAKMDK +VHDVVLVGGSTRIPKVQQLLQDFFNGKEL KSINPDE           IL+GEG EKVQD             ETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGER RT+DNNLLGKFEL+GIPPAPRGVPQI V
Sbjct:  314 DLFRKCMDPVEKCLHDAKMDKMTVHDVVLVGGSTRIPKVQQLLQDFFNGKELNKSINPDEAVAYGAAVQAAILTGEGGEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINV 482          
BLAST of CX676398 vs. ExPASy Swiss-Prot
Match: HSP71_SOLLC (Heat shock cognate 70 kDa protein 1 OS=Solanum lycopersicum GN=HSC-I PE=2 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 1.715e-68
Identity = 136/171 (79.53%), Postives = 141/171 (82.46%), Query Frame = 1
Query:    1 DLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQL-LQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGE-RTRTRDNNLLGKFELSGIPPAPRGVPQITV 507
            DLFRKCMEPVEKCLRDAKMDKS+VHDVVLVGGSTRIPKVQQ+ + +FFNGKELCKSINPDE           ILSGEGNEKVQD             ETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQV+EGE R RTRDNNLLGKFELS IPPAPR VPQITV
Sbjct:  314 DLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQVAMTNFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVFEGERRARTRDNNLLGKFELSVIPPAPRVVPQITV 484          
The following BLAST results are available for this feature:
BLAST of CX676398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSP72_SOLLC2.919e-7685.21Heat shock cognate 70 kDa protein 2 OS=Solanum lyc... [more]
HSP7E_SPIOL3.227e-7584.02Chloroplast envelope membrane 70 kDa heat shock-re... [more]
HSP7C_PETHY7.190e-7584.02Heat shock cognate 70 kDa protein OS=Petunia hybri... [more]
HSP71_ARATH7.190e-7583.43Heat shock cognate 70 kDa protein 1 OS=Arabidopsis... [more]
HSP72_ARATH6.729e-7381.07Heat shock cognate 70 kDa protein 2 OS=Arabidopsis... [more]
HSP73_ARATH1.958e-7281.66Heat shock cognate 70 kDa protein 3 OS=Arabidopsis... [more]
HSP70_SOYBN3.692e-7178.11Heat shock 70 kDa protein OS=Glycine max GN=HSP70 ... [more]
HSP70_MAIZE4.823e-7182.25Heat shock 70 kDa protein OS=Zea mays GN=HSP70 PE=... [more]
HSP70_CHLRE1.833e-7079.29Heat shock 70 kDa protein OS=Chlamydomonas reinhar... [more]
HSP71_SOLLC1.715e-6879.53Heat shock cognate 70 kDa protein 1 OS=Solanum lyc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_69D01_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-69D01-G1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676398 ID=CX676398; Name=CX676398; organism=Citrus sinensis; type=EST; length=508bp
GATCTGTTCAGAAAATGCATGGAGCCAGTTGAGAAGTGTTTGAGGGATGC
CAAGATGGACAAGAGCTCAGTCCATGATGTTGTTCTTGTCGGAGGATCTA
CTAGGATTCCCAAAGTCCAGCAGCTTTTGCAAGATTTCTTTAATGGGAAG
GAGCTTTGCAAGAGCATCAACCCCGATGAGGCTGTTGCCTATGGTGCTGC
TGTGCAAGCTGCTATCTTGAGTGGTGAGGGTAATGAGAAGGTGCAGGATC
TTCTGCTATTGGATGTCACACCTCTCTCCCTTGGTTTGGAGACTGCTGGT
GGTGTCATGACTGTGTTGATTCCAAGGAACACAACCATTCCCACCAAGAA
GGAGCAGGTCTTCTCAACTTACTCTGACAACCAACCTGGTGTGTTGATCC
AAGTCTATGAAGGCGAAAGGACAAGAACCAGGGACAATAACTTGTTGGGT
AAATTTGAGCTCTCTGGTATTCCCCCAGCTCCTAGGGGTGTTCCTCAAAT
CACTGTGT
back to top