CX676392 | Citrus Genome Database

Overview


Name	CX676392
Unique Name	CX676392
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	681

Libraries


Library Name	Type
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX676392 vs. ExPASy Swiss-Prot
Match: CDPK8_ARATH (Calcium-dependent protein kinase 8 OS=Arabidopsis thaliana GN=CPK8 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 4.054e-34
Identity = 58/72 (80.56%), Postives = 66/72 (91.67%), Query Frame = 3

Query:  306 FKRDPWPKVFENAKNLVKKLLNHDPKQRLTAEEVLEHPWLQNAKKAPNVSLGETVKARLKQFSVMNKLKKRA 521
            FKRDPWP+V E AK+LV+K+L  DPK+RL+A +VLEH W+QNAKKAPNVSLGETVKARLKQFSVMNKLKKRA
Sbjct:  276 FKRDPWPRVSETAKDLVRKMLEPDPKKRLSAAQVLEHSWIQNAKKAPNVSLGETVKARLKQFSVMNKLKKRA 347

HSP 2 Score: 43.1282 bits (100), Expect = 4.054e-34
Identity = 20/25 (80.00%), Postives = 24/25 (96.00%), Query Frame = 2

Query:  602 LQVVAEFLSVEEVAGLKEAFEMMDT 676
            L+V+AE LSVEEVAG+KEAFEMMD+
Sbjct:  348 LRVIAEHLSVEEVAGIKEAFEMMDS 372

HSP 3 Score: 76.2554 bits (186), Expect = 1.712e-13
Identity = 33/40 (82.50%), Postives = 36/40 (90.00%), Query Frame = 2

Query:    2 GSPYYMAPEVLKRNYGREVYVWNTGVILYILLCGVLPFWA 121
            GSPYYMAPEVL+RNYG EV +W+ GVILYILLCGV PFWA
Sbjct:  220 GSPYYMAPEVLRRNYGPEVDIWSAGVILYILLCGVPPFWA 259

[Close]

BLAST of CX676392 vs. ExPASy Swiss-Prot
Match: CDPK7_ARATH (Calcium-dependent protein kinase 7 OS=Arabidopsis thaliana GN=CPK7 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.166e-33
Identity = 57/72 (79.17%), Postives = 66/72 (91.67%), Query Frame = 3

Query:  306 FKRDPWPKVFENAKNLVKKLLNHDPKQRLTAEEVLEHPWLQNAKKAPNVSLGETVKARLKQFSVMNKLKKRA 521
            FKRDPWP+V ++AK+LV+K+L  DPK+RLTA +VLEH W+ NAKKAPNVSLGETVKARLKQFSVMNKLKKRA
Sbjct:  278 FKRDPWPRVSDSAKDLVRKMLEPDPKKRLTAAQVLEHTWILNAKKAPNVSLGETVKARLKQFSVMNKLKKRA 349

HSP 2 Score: 43.5134 bits (101), Expect = 1.166e-33
Identity = 20/26 (76.92%), Postives = 23/26 (88.46%), Query Frame = 2

Query:  602 LQVVAEFLSVEEVAGLKEAFEMMDTN 679
            L+V+AE LSVEE AG+KEAFEMMD N
Sbjct:  350 LRVIAEHLSVEEAAGIKEAFEMMDVN 375

HSP 3 Score: 76.2554 bits (186), Expect = 1.712e-13
Identity = 33/40 (82.50%), Postives = 36/40 (90.00%), Query Frame = 2

Query:    2 GSPYYMAPEVLKRNYGREVYVWNTGVILYILLCGVLPFWA 121
            GSPYYMAPEVL+RNYG E+ VW+ GVILYILLCGV PFWA
Sbjct:  222 GSPYYMAPEVLRRNYGPEIDVWSAGVILYILLCGVPPFWA 261

[Close]

BLAST of CX676392 vs. ExPASy Swiss-Prot
Match: CDPKW_ARATH (Calcium-dependent protein kinase 32 OS=Arabidopsis thaliana GN=CPK32 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.764e-31
Identity = 56/72 (77.78%), Postives = 68/72 (94.44%), Query Frame = 3

Query:  306 FKRDPWPKVFENAKNLVKKLLNHDPKQRLTAEEVLEHPWLQNAKKAPNVSLGETVKARLKQFSVMNKLKKRA 521
            F+RDPWPKV ENAK+L++K+L+ D K+RLTA++VL+HPWLQNAK APNVSLGETV+ARLKQF+VMNKLKKRA
Sbjct:  282 FRRDPWPKVSENAKDLIRKMLDPDQKRRLTAQQVLDHPWLQNAKTAPNVSLGETVRARLKQFTVMNKLKKRA 353

HSP 2 Score: 34.2686 bits (77), Expect = 1.764e-31
Identity = 14/26 (53.85%), Postives = 22/26 (84.62%), Query Frame = 2

Query:  602 LQVVAEFLSVEEVAGLKEAFEMMDTN 679
            L+V+AE LS EE +G++E F++MDT+
Sbjct:  354 LRVIAEHLSDEEASGIREGFQIMDTS 379

HSP 3 Score: 77.411 bits (189), Expect = 7.686e-14
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 2

Query:    2 GSPYYMAPEVLKRNYGREVYVWNTGVILYILLCGVLPFWA 121
            GSPYYMAPEVLKRNYG EV +W+ GVILYILLCGV PFWA
Sbjct:  226 GSPYYMAPEVLKRNYGPEVDIWSAGVILYILLCGVPPFWA 265

[Close]

BLAST of CX676392 vs. ExPASy Swiss-Prot
Match: CDPKE_ARATH (Calcium-dependent protein kinase 14 OS=Arabidopsis thaliana GN=CPK14 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.991e-31
Identity = 55/72 (76.39%), Postives = 67/72 (93.06%), Query Frame = 3

Query:  306 FKRDPWPKVFENAKNLVKKLLNHDPKQRLTAEEVLEHPWLQNAKKAPNVSLGETVKARLKQFSVMNKLKKRA 521
            FKRDPWPKV +NAK+L+KK+L+ DP++RLTA++VL+HPW+QN K A NVSLGETV+ARLKQFSVMNKLKKRA
Sbjct:  273 FKRDPWPKVSDNAKDLIKKMLHPDPRRRLTAQQVLDHPWIQNGKNASNVSLGETVRARLKQFSVMNKLKKRA 344

HSP 2 Score: 34.2686 bits (77), Expect = 2.991e-31
Identity = 15/26 (57.69%), Postives = 22/26 (84.62%), Query Frame = 2

Query:  602 LQVVAEFLSVEEVAGLKEAFEMMDTN 679
            L+V+AE LSVEE + +KE F++MDT+
Sbjct:  345 LRVIAEHLSVEETSCIKERFQVMDTS 370

HSP 3 Score: 75.0998 bits (183), Expect = 3.814e-13
Identity = 31/40 (77.50%), Postives = 37/40 (92.50%), Query Frame = 2

Query:    2 GSPYYMAPEVLKRNYGREVYVWNTGVILYILLCGVLPFWA 121
            GSPYYMAPEVL+R+YG+E+ +W+ GVILYILLCGV PFWA
Sbjct:  217 GSPYYMAPEVLRRSYGQEIDIWSAGVILYILLCGVPPFWA 256

[Close]

BLAST of CX676392 vs. ExPASy Swiss-Prot
Match: CDPKD_ARATH (Calcium-dependent protein kinase 13 OS=Arabidopsis thaliana GN=CPK13 PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 1.295e-28
Identity = 50/72 (69.44%), Postives = 64/72 (88.89%), Query Frame = 3

Query:  306 FKRDPWPKVFENAKNLVKKLLNHDPKQRLTAEEVLEHPWLQNAKKAPNVSLGETVKARLKQFSVMNKLKKRA 521
            FKR+PWP + E AKNLV+++L  DPK+RLTA++VLEHPW+QNAKKAPNV LG+ VK+RLKQFSVMN+ K++A
Sbjct:  273 FKREPWPNISETAKNLVRQMLEPDPKRRLTAKQVLEHPWIQNAKKAPNVPLGDVVKSRLKQFSVMNRFKRKA 344

HSP 2 Score: 32.7278 bits (73), Expect = 1.295e-28
Identity = 15/26 (57.69%), Postives = 19/26 (73.08%), Query Frame = 2

Query:  602 LQVVAEFLSVEEVAGLKEAFEMMDTN 679
            L+V+AEFLS EEV  +K  F  MDT+
Sbjct:  345 LRVIAEFLSTEEVEDIKVMFNKMDTD 370

HSP 3 Score: 77.0258 bits (188), Expect = 1.004e-13
Identity = 33/40 (82.50%), Postives = 36/40 (90.00%), Query Frame = 2

Query:    2 GSPYYMAPEVLKRNYGREVYVWNTGVILYILLCGVLPFWA 121
            GSPYYMAPEVLKRNYG E+ +W+ GVILYILLCGV PFWA
Sbjct:  217 GSPYYMAPEVLKRNYGPEIDIWSAGVILYILLCGVPPFWA 256

[Close]

BLAST of CX676392 vs. ExPASy Swiss-Prot
Match: CDPKA_ARATH (Calcium-dependent protein kinase 10 OS=Arabidopsis thaliana GN=CPK10 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 7.253e-26
Identity = 47/71 (66.20%), Postives = 64/71 (90.14%), Query Frame = 3

Query:  306 FKRDPWPKVFENAKNLVKKLLNHDPKQRLTAEEVLEHPWLQNAKKAPNVSLGETVKARLKQFSVMNKLKKR 518
            FKRDPWP++ E+AK+LVK++L+ DP +RLTA++VL HPW+QNAKKAPNV LG+ V++RLKQFS+MN+ KK+
Sbjct:  282 FKRDPWPQISESAKSLVKQMLDPDPTKRLTAQQVLAHPWIQNAKKAPNVPLGDIVRSRLKQFSMMNRFKKK 352

HSP 2 Score: 28.8758 bits (63), Expect = 7.253e-26
Identity = 12/24 (50.00%), Postives = 18/24 (75.00%), Query Frame = 2

Query:  602 LQVVAEFLSVEEVAGLKEAFEMMD 673
            L+V+AE LS++EV  +K  F +MD
Sbjct:  354 LRVIAEHLSIQEVEVIKNMFSLMD 377

HSP 3 Score: 72.4034 bits (176), Expect = 2.472e-12
Identity = 32/40 (80.00%), Postives = 35/40 (87.50%), Query Frame = 2

Query:    2 GSPYYMAPEVLKRNYGREVYVWNTGVILYILLCGVLPFWA 121
            GSPYYMAPEVLKR+YG  V VW+ GVI+YILLCGV PFWA
Sbjct:  226 GSPYYMAPEVLKRDYGPGVDVWSAGVIIYILLCGVPPFWA 265

[Close]

BLAST of CX676392 vs. ExPASy Swiss-Prot
Match: CDPKU_ARATH (Calcium-dependent protein kinase 30 OS=Arabidopsis thaliana GN=CPK30 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.011e-24
Identity = 47/72 (65.28%), Postives = 64/72 (88.89%), Query Frame = 3

Query:  306 FKRDPWPKVFENAKNLVKKLLNHDPKQRLTAEEVLEHPWLQNAKKAPNVSLGETVKARLKQFSVMNKLKKRA 521
            FKRDPW ++ E+AK+LVK++L  D  +RLTA++VL+HPW+QNAKKAPNV LG+ V++RLKQFS+MN+LKK+A
Sbjct:  278 FKRDPWSQISESAKSLVKQMLEPDSTKRLTAQQVLDHPWIQNAKKAPNVPLGDIVRSRLKQFSMMNRLKKKA 349

HSP 2 Score: 27.335 bits (59), Expect = 1.011e-24
Identity = 11/24 (45.83%), Postives = 18/24 (75.00%), Query Frame = 2

Query:  602 LQVVAEFLSVEEVAGLKEAFEMMD 673
            L+V+AE LS++EV  ++  F +MD
Sbjct:  350 LRVIAEHLSIQEVEVIRNMFTLMD 373

HSP 3 Score: 77.7962 bits (190), Expect = 5.885e-14
Identity = 35/40 (87.50%), Postives = 36/40 (90.00%), Query Frame = 2

Query:    2 GSPYYMAPEVLKRNYGREVYVWNTGVILYILLCGVLPFWA 121
            GSPYYMAPEVLKRNYG EV VW+ GVILYILLCGV PFWA
Sbjct:  222 GSPYYMAPEVLKRNYGPEVDVWSAGVILYILLCGVPPFWA 261

[Close]

BLAST of CX676392 vs. ExPASy Swiss-Prot
Match: CDPKO_ARATH (Calcium-dependent protein kinase 24 OS=Arabidopsis thaliana GN=CPK24 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.088e-21
Identity = 40/71 (56.34%), Postives = 58/71 (81.69%), Query Frame = 3

Query:  306 FKRDPWPKVFENAKNLVKKLLNHDPKQRLTAEEVLEHPWLQNAKKAPNVSLGETVKARLKQFSVMNKLKKR 518
            F+RDPWPKV   AK LVK +L+ +P  RLT +EVLEHPW++NA++APNV+LG+ V+ +++QF +MN+ KK+
Sbjct:  285 FERDPWPKVSHEAKELVKNMLDANPYSRLTVQEVLEHPWIRNAERAPNVNLGDNVRTKIQQFLLMNRFKKK 355

HSP 2 Score: 26.5646 bits (57), Expect = 2.088e-21
Identity = 11/26 (42.31%), Postives = 19/26 (73.08%), Query Frame = 2

Query:  602 LQVVAEFLSVEEVAGLKEAFEMMDTN 679
            L++VA+ L  EE+A + + F+ MDT+
Sbjct:  357 LRIVADNLPNEEIAAIVQMFQTMDTD 382

HSP 3 Score: 76.2554 bits (186), Expect = 1.712e-13
Identity = 33/40 (82.50%), Postives = 36/40 (90.00%), Query Frame = 2

Query:    2 GSPYYMAPEVLKRNYGREVYVWNTGVILYILLCGVLPFWA 121
            GSPYYMAPEVL+RNYG E+ VW+ GVILYILLCGV PFWA
Sbjct:  229 GSPYYMAPEVLRRNYGPEIDVWSAGVILYILLCGVPPFWA 268

[Close]

BLAST of CX676392 vs. ExPASy Swiss-Prot
Match: CDPKH_ARATH (Calcium-dependent protein kinase 17 OS=Arabidopsis thaliana GN=CPK17 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.013e-20
Identity = 41/72 (56.94%), Postives = 50/72 (69.44%), Query Frame = 3

Query:  306 FKRDPWPKVFENAKNLVKKLLNHDPKQRLTAEEVLEHPWLQNAKKAPNVSLGETVKARLKQFSVMNKLKKRA 521
            F  DPWP +   AK+LVKK+LN DPKQRLTA +VL HPW++   +AP+V L   V +RLKQF  MN  KK A
Sbjct:  292 FSSDPWPSISPQAKDLVKKMLNSDPKQRLTAAQVLNHPWIKEDGEAPDVPLDNAVMSRLKQFKAMNNFKKVA 363

HSP 2 Score: 31.5722 bits (70), Expect = 1.013e-20
Identity = 15/26 (57.69%), Postives = 20/26 (76.92%), Query Frame = 2

Query:  602 LQVVAEFLSVEEVAGLKEAFEMMDTN 679
            L+V+A  LS EE+ GLKE F+ MDT+
Sbjct:  364 LRVIAGCLSEEEIMGLKEMFKGMDTD 389

HSP 3 Score: 67.3958 bits (163), Expect = 7.954e-11
Identity = 29/40 (72.50%), Postives = 33/40 (82.50%), Query Frame = 2

Query:    2 GSPYYMAPEVLKRNYGREVYVWNTGVILYILLCGVLPFWA 121
            GS YY+APEVLKR YG E  +W+ GV+LYILLCGV PFWA
Sbjct:  236 GSAYYIAPEVLKRKYGPEADIWSIGVMLYILLCGVPPFWA 275

[Close]

BLAST of CX676392 vs. ExPASy Swiss-Prot
Match: CDPK_SOYBN (Calcium-dependent protein kinase SK5 OS=Glycine max PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.319e-20
Identity = 38/72 (52.78%), Postives = 52/72 (72.22%), Query Frame = 3

Query:  306 FKRDPWPKVFENAKNLVKKLLNHDPKQRLTAEEVLEHPWLQNAKKAPNVSLGETVKARLKQFSVMNKLKKRA 521
            F  +PWP + ++AK+L++K+L+ +PK RLTA EVL HPW+ +   AP+  L   V +RLKQFS MNKLKK A
Sbjct:  253 FHSEPWPSISDSAKDLIRKMLDQNPKTRLTAHEVLRHPWIVDDNIAPDKPLDSAVLSRLKQFSAMNKLKKMA 324

HSP 2 Score: 35.8094 bits (81), Expect = 1.319e-20
Identity = 16/26 (61.54%), Postives = 22/26 (84.62%), Query Frame = 2

Query:  602 LQVVAEFLSVEEVAGLKEAFEMMDTN 679
            L+V+AE LS EE+ GLKE F+M+DT+
Sbjct:  325 LRVIAERLSEEEIGGLKELFKMIDTD 350

The following BLAST results are available for this feature:

BLAST of CX676392 vs. ExPASy Swiss-Prot

BLAST of CX676392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38


Match Name	E-value	Identity	Description
CDPK8_ARATH	4.054e-34	80.56	Calcium-dependent protein kinase 8 OS=Arabidopsis ...	[more]
CDPK7_ARATH	1.166e-33	79.17	Calcium-dependent protein kinase 7 OS=Arabidopsis ...	[more]
CDPKW_ARATH	1.764e-31	77.78	Calcium-dependent protein kinase 32 OS=Arabidopsis...	[more]
CDPKE_ARATH	2.991e-31	76.39	Calcium-dependent protein kinase 14 OS=Arabidopsis...	[more]
CDPKD_ARATH	1.295e-28	69.44	Calcium-dependent protein kinase 13 OS=Arabidopsis...	[more]
CDPKA_ARATH	7.253e-26	66.20	Calcium-dependent protein kinase 10 OS=Arabidopsis...	[more]
CDPKU_ARATH	1.011e-24	65.28	Calcium-dependent protein kinase 30 OS=Arabidopsis...	[more]
CDPKO_ARATH	2.088e-21	56.34	Calcium-dependent protein kinase 24 OS=Arabidopsis...	[more]
CDPKH_ARATH	1.013e-20	56.94	Calcium-dependent protein kinase 17 OS=Arabidopsis...	[more]
CDPK_SOYBN	1.319e-20	52.78	Calcium-dependent protein kinase SK5 OS=Glycine ma...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS08_69C06_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-69C06-E11-5.g, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX676392 ID=CX676392; Name=CX676392; organism=Citrus sinensis; type=EST; length=681bp
TGGAAGTCCATATTACATGGCGCCAGAGGTTTTAAAGCGCAATTATGGAC
GAGAAGTTTATGTCTGGAATACTGGAGTTATCCTATATATTTTGCTTTGT
GGTGTCCTACCTTTTTGGGCAGGTCAATATCTTTATTTATACATTTGAGT
TCTATTGGGGTTAGGCTTTCTTTCTATTATTATAATTACTTTTTCATTTT
ACATTTGTTAGGGTTGTCAATGAGTGCTTTGAGAGTTGGAAGAATAGTCT
GAGTACCTTTTAAGCATCTCACTTTATTATTGTTGGTGTTTAACACATAT
ATATTTTTAAGAGGGACCCTTGGCCCAAAGTTTTTGAAAATGCAAAGAAC
CTTGTGAAAAAGTTGCTTAATCATGACCCAAAGCAGAGGCTTACAGCTGA
GGAAGTACTAGAGCATCCTTGGTTACAAAATGCCAAAAAGGCTCCAAATG
TTTCACTAGGTGAGACCGTGAAAGCAAGGCTTAAACAATTTTCTGTAATG
AACAAGCTTAAAAAAAGAGCTCTACAGGTAATAATTTTGATTCTTCTACA
TTATTTGCTGCTTTTCTGTAAATGAGATGGAAGCTTACTGGACATTTATA
TCTGCAAGTTGTGGCTGAGTTTTTGTCTGTGGAGGAAGTGGCTGGTTTAA
AGGAGGCATTTGAGATGATGGACACTAACAA