CX676385

Overview
NameCX676385
Unique NameCX676385
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length583
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX676385 vs. ExPASy Swiss-Prot
Match: KING1_ARATH (SNF1-related protein kinase regulatory subunit gamma 1 OS=Arabidopsis thaliana GN=KING1 PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 5.757e-38
Identity = 68/101 (67.33%), Postives = 88/101 (87.13%), Query Frame = 3 
Query:  135 HRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPGYFGDFFDGVLPLPENSRV 437
            +RSIT KNFL +VR+++E+     +P++SG++ C++NHT+KELI +LD++KIHRIYVVD  GNLEG+ITLRDII+RLVHEP GYFGDFFDGV+PLPEN RV
Sbjct:  324 YRSITTKNFLVSVREHLEKCGDTSAPIMSGVIACTKNHTLKELILMLDAEKIHRIYVVDDFGNLEGLITLRDIIARLVHEPSGYFGDFFDGVMPLPENYRV 424

HSP 2 Score: 30.4166 bits (67), Expect = 5.757e-38
Identity = 12/14 (85.71%), Postives = 13/14 (92.86%), Query Frame = 1 
Query:    1 LLTAPEIYHDYRFV 42
            LLTAPEIYHDYR +
Sbjct:  314 LLTAPEIYHDYRSI 327
The following BLAST results are available for this feature:
BLAST of CX676385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
KING1_ARATH5.757e-3867.33SNF1-related protein kinase regulatory subunit gam... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_69B12_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-69B12-C23-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676385 ID=CX676385; Name=CX676385; organism=Citrus sinensis; type=EST; length=583bp
CTTTTAACTGCACCGGAGATCTATCACGATTATAGGTTTGTCGATGAATC
TTTTATTTACCAGTATTTTACAATGTTTTGTTAAGATGTCTCATTGTTAA
CTGTTGAAGTTACTTATGCAAACTTGTGTTAATGCATAGATCTATCACTG
CTAAGAACTTCCTGACAGCAGTTAGAAAGTACATGGAAGAACATCATCAT
GAGGACTCACCATTGTTAAGTGGCATGGTAACATGCAGCAGAAACCACAC
AATAAAGGAATTAATCCATCTGCTTGATTCCAAAAAAATTCATCGAATTT
ATGTGGTGGATTTTAATGGGAATTTGGAAGGTGTGATCACATTGAGAGAC
ATCATCTCAAGGCTAGTACACGAGCCTCCAGGCTACTTTGGTGATTTCTT
CGATGGAGTCTTGCCATTGCCTGAGAATAGCAGGGTCTAAAGGTAACAAG
CCCCCTTATGTTTTCAGCAACTAATCATTTGCTTCTGTCTGATGTTCGTG
TGTCGGAGACTGGTTGGATGCAGTGATTGTAACGTAGTTTATTTCATGCT
GATGTAATTGAAAACCATCTTGCTTAAAAAAAA
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