FC921876

Overview
NameFC921876
Unique NameFC921876
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length323
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13855 contig Csv1_Contig13855:2..324. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921876 vs. ExPASy Swiss-Prot
Match: RS5_NEUCR (40S ribosomal protein S5 OS=Neurospora crassa GN=rps-5 PE=3 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 1.055e-28
Identity = 65/71 (91.55%), Postives = 68/71 (95.77%), Query Frame = 3
Query:    3 VLRQAVDVSPLRRVNQSISLLTIGAREASFRNIKSIAECLAEELINAAKSSSNSYAIKKKDELERVAKSNR 215
            V RQAVDVSPLRRVNQ+I+LLT GAREASFRN+KSIAECLAEELINAAK SSNSYAIKKKDELERVAKSNR
Sbjct:  143 VRRQAVDVSPLRRVNQAIALLTTGAREASFRNVKSIAECLAEELINAAKGSSNSYAIKKKDELERVAKSNR 213          
BLAST of FC921876 vs. ExPASy Swiss-Prot
Match: RS5B_SCHPO (40S ribosomal protein S5-B OS=Schizosaccharomyces pombe GN=rps5b PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.838e-28
Identity = 61/71 (85.92%), Postives = 69/71 (97.18%), Query Frame = 3
Query:    3 VLRQAVDVSPLRRVNQSISLLTIGAREASFRNIKSIAECLAEELINAAKSSSNSYAIKKKDELERVAKSNR 215
            V RQAVDVSPLRRVNQ+++L+TIGAREA+FRN+KSI+ECLAEE+INAAK SSNSYAIKKKDELERVAKSNR
Sbjct:  133 VRRQAVDVSPLRRVNQALALITIGAREAAFRNVKSISECLAEEIINAAKGSSNSYAIKKKDELERVAKSNR 203          
BLAST of FC921876 vs. ExPASy Swiss-Prot
Match: RS5A_SCHPO (40S ribosomal protein S5-A OS=Schizosaccharomyces pombe GN=rps5a PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.838e-28
Identity = 61/71 (85.92%), Postives = 69/71 (97.18%), Query Frame = 3
Query:    3 VLRQAVDVSPLRRVNQSISLLTIGAREASFRNIKSIAECLAEELINAAKSSSNSYAIKKKDELERVAKSNR 215
            V RQAVDVSPLRRVNQ+++L+TIGAREA+FRN+KSI+ECLAEE+INAAK SSNSYAIKKKDELERVAKSNR
Sbjct:  133 VRRQAVDVSPLRRVNQALALITIGAREAAFRNVKSISECLAEEIINAAKGSSNSYAIKKKDELERVAKSNR 203          
BLAST of FC921876 vs. ExPASy Swiss-Prot
Match: RS5_CICAR (40S ribosomal protein S5 (Fragment) OS=Cicer arietinum GN=RPS5 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.432e-27
Identity = 61/71 (85.92%), Postives = 67/71 (94.37%), Query Frame = 3
Query:    3 VLRQAVDVSPLRRVNQSISLLTIGAREASFRNIKSIAECLAEELINAAKSSSNSYAIKKKDELERVAKSNR 215
            V RQAVD+SPLRRVNQ+I LLT GAREA+FRNIKSIAECLA+ELINAAK SSNSYAIKKKDE+ERVAK+NR
Sbjct:  127 VRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKSIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 197          
BLAST of FC921876 vs. ExPASy Swiss-Prot
Match: RS51_ARATH (40S ribosomal protein S5-1 OS=Arabidopsis thaliana GN=RPS5A PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.874e-27
Identity = 60/71 (84.51%), Postives = 67/71 (94.37%), Query Frame = 3
Query:    3 VLRQAVDVSPLRRVNQSISLLTIGAREASFRNIKSIAECLAEELINAAKSSSNSYAIKKKDELERVAKSNR 215
            V RQAVD+SPLRRVNQ+I LLT GAREA+FRNIK+IAECLA+ELINAAK SSNSYAIKKKDE+ERVAK+NR
Sbjct:  137 VRRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207          
BLAST of FC921876 vs. ExPASy Swiss-Prot
Match: RS5_YEAST (40S ribosomal protein S5 OS=Saccharomyces cerevisiae GN=RPS5 PE=1 SV=3)

HSP 1 Score: 118.242 bits (295), Expect = 1.290e-26
Identity = 62/69 (89.86%), Postives = 66/69 (95.65%), Query Frame = 3
Query:    9 RQAVDVSPLRRVNQSISLLTIGAREASFRNIKSIAECLAEELINAAKSSSNSYAIKKKDELERVAKSNR 215
            RQAVDVSPLRRVNQ+I+LLTIGAREA+FRNIK+IAE LAEELINAAK SS SYAIKKKDELERVAKSNR
Sbjct:  157 RQAVDVSPLRRVNQAIALLTIGAREAAFRNIKTIAETLAEELINAAKGSSTSYAIKKKDELERVAKSNR 225          
BLAST of FC921876 vs. ExPASy Swiss-Prot
Match: RS5_PODCA (40S ribosomal protein S5 OS=Podocoryne carnea GN=RPS5 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.290e-26
Identity = 62/71 (87.32%), Postives = 66/71 (92.96%), Query Frame = 3
Query:    3 VLRQAVDVSPLRRVNQSISLLTIGAREASFRNIKSIAECLAEELINAAKSSSNSYAIKKKDELERVAKSNR 215
            V RQAVDV+PLRRVNQ+I LL  GAREASFRNIKSIAECLA+ELINAA+ SSNSYAIKKKDELERVAKSNR
Sbjct:  140 VRRQAVDVAPLRRVNQAIWLLCTGAREASFRNIKSIAECLADELINAARGSSNSYAIKKKDELERVAKSNR 210          
BLAST of FC921876 vs. ExPASy Swiss-Prot
Match: RS5_MOUSE (40S ribosomal protein S5 OS=Mus musculus GN=Rps5 PE=2 SV=3)

HSP 1 Score: 118.242 bits (295), Expect = 1.290e-26
Identity = 62/71 (87.32%), Postives = 66/71 (92.96%), Query Frame = 3
Query:    3 VLRQAVDVSPLRRVNQSISLLTIGAREASFRNIKSIAECLAEELINAAKSSSNSYAIKKKDELERVAKSNR 215
            V RQAVDVSPLRRVNQ+I LL  GAREA+FRNIK+IAECLA+ELINAAK SSNSYAIKKKDELERVAKSNR
Sbjct:  134 VRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKNIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204          
BLAST of FC921876 vs. ExPASy Swiss-Prot
Match: RS5_HUMAN (40S ribosomal protein S5 OS=Homo sapiens GN=RPS5 PE=1 SV=4)

HSP 1 Score: 118.242 bits (295), Expect = 1.290e-26
Identity = 62/71 (87.32%), Postives = 66/71 (92.96%), Query Frame = 3
Query:    3 VLRQAVDVSPLRRVNQSISLLTIGAREASFRNIKSIAECLAEELINAAKSSSNSYAIKKKDELERVAKSNR 215
            V RQAVDVSPLRRVNQ+I LL  GAREA+FRNIK+IAECLA+ELINAAK SSNSYAIKKKDELERVAKSNR
Sbjct:  134 VRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204          
BLAST of FC921876 vs. ExPASy Swiss-Prot
Match: RS5_BOVIN (40S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=2 SV=3)

HSP 1 Score: 118.242 bits (295), Expect = 1.290e-26
Identity = 62/71 (87.32%), Postives = 66/71 (92.96%), Query Frame = 3
Query:    3 VLRQAVDVSPLRRVNQSISLLTIGAREASFRNIKSIAECLAEELINAAKSSSNSYAIKKKDELERVAKSNR 215
            V RQAVDVSPLRRVNQ+I LL  GAREA+FRNIK+IAECLA+ELINAAK SSNSYAIKKKDELERVAKSNR
Sbjct:  134 VRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204          
The following BLAST results are available for this feature:
BLAST of FC921876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RS5_NEUCR1.055e-2891.5540S ribosomal protein S5 OS=Neurospora crassa GN=r... [more]
RS5B_SCHPO6.838e-2885.9240S ribosomal protein S5-B OS=Schizosaccharomyces ... [more]
RS5A_SCHPO6.838e-2885.9240S ribosomal protein S5-A OS=Schizosaccharomyces ... [more]
RS5_CICAR4.432e-2785.9240S ribosomal protein S5 (Fragment) OS=Cicer ariet... [more]
RS51_ARATH9.874e-2784.5140S ribosomal protein S5-1 OS=Arabidopsis thaliana... [more]
RS5_YEAST1.290e-2689.8640S ribosomal protein S5 OS=Saccharomyces cerevisi... [more]
RS5_PODCA1.290e-2687.3240S ribosomal protein S5 OS=Podocoryne carnea GN=R... [more]
RS5_MOUSE1.290e-2687.3240S ribosomal protein S5 OS=Mus musculus GN=Rps5 P... [more]
RS5_HUMAN1.290e-2687.3240S ribosomal protein S5 OS=Homo sapiens GN=RPS5 P... [more]
RS5_BOVIN1.290e-2687.3240S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC06053D09T7 RindPdigS Citrus sinensis cDNA clone C06053D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921876 ID=FC921876; Name=FC921876; organism=Citrus sinensis; type=EST; length=323bp
CCGTCCTTCGTCAAGCCGTCGATGTGTCTCCCCTCCGTCGCGTGAACCAG
TCCATCTCTCTGCTCACCATCGGTGCCCGCGAGGCTTCTTTCCGCAACAT
CAAGAGCATTGCTGAGTGCCTTGCTGAGGAGCTGATCAACGCCGCCAAGA
GTTCCTCTAACTCCTACGCTATCAAGAAGAAGGATGAGCTCGAGCGTGTT
GCCAAGAGCAACCGGTAAAGGGGTAGTGTTGGATTTGTTCTCCGTATGGT
CCTCTGTTTGCGTATACTGGAGTGGACGGGGGTTTAACCGGGATTCAGTG
GATTCGCATGCATCTGCAAGGCT
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