FC921875

Overview
NameFC921875
Unique NameFC921875
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length326
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7781 contig Csv1_Contig7781:348..678. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC921875 vs. ExPASy Swiss-Prot
Match: ASPL2_ARATH (Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 5.955e-32
Identity = 64/108 (59.26%), Postives = 82/108 (75.93%), Query Frame = -2 
Query:    2 TLA*LPPMLYDLVLSQILDRQPGLKMHTVEEQFSCFQFGKNVDDAFPTVTFKFKGSLSLTVYPHEYLFQIREDVWCIGWQNGGLQNHDGRQMILLGDLVLSNKLVVYD 325
            TLA  P +LYD ++  IL RQP +K+H VEE F CF F  NVD+AFP V+F+F+ S+ LTVYPH+YLF + E+++C GWQ GGL   +  ++ILLGDLVLSNKLVVYD
Sbjct:  307 TLAYFPKVLYDSLIETILARQP-VKLHIVEETFQCFSFSTNVDEAFPPVSFEFEDSVKLTVYPHDYLFTLEEELYCFGWQAGGLTTDERSEVILLGDLVLSNKLVVYD 413
The following BLAST results are available for this feature:
BLAST of FC921875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ASPL2_ARATH5.955e-3259.26Aspartic proteinase-like protein 2 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionC06053D08T7 RindPdigS Citrus sinensis cDNA clone C06053D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921875 ID=FC921875; Name=FC921875; organism=Citrus sinensis; type=EST; length=326bp
CATCATATACGACTAGCTTATTTGAAAGCACCAAATCTCCCAATAGAATC
ATCTGCCTCCCGTCATGATTCTGTAGACCACCATTTTGCCAACCAATACA
CCACACATCTTCTCGAATTTGAAACAAATACTCGTGCGGGTAAACTGTCA
AAGAAAGAGAACCCTTGAACTTGAACGTAACCGTTGGAAATGCGTCGTCA
ACATTTTTACCGAACTGAAAACAAGAAAATTGTTCCTCAACAGTATGCAT
TTTCAATCCAGGCTGGCGATCCAAAATCTGACTCAATACTAAATCATAAA
GCATCGGTGGAAGCTATGCCAAGGTT
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