EY649924

Overview
NameEY649924
Unique NameEY649924
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length518
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7251 contig Csv1_Contig7251:1438..1955. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS_CAPAN (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Capsicum annuum GN=TKT2 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 1.589e-40
Identity = 78/87 (89.66%), Postives = 86/87 (98.85%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREALEIMS 274
            LAKSHEVL+TVE+GSIGGFGSHVVQF+ALDGLLDG +KWRP+VLPDRYIDHGSPADQLA+AGLTPSHIAATVFNILGQTREALE+M+
Sbjct:  633 LAKSHEVLVTVEKGSIGGFGSHVVQFMALDGLLDGKLKWRPIVLPDRYIDHGSPADQLAEAGLTPSHIAATVFNILGQTREALEVMT 719          
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS_ORYSJ (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Oryza sativa subsp. japonica GN=CLA1 PE=2 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 8.718e-39
Identity = 76/87 (87.36%), Postives = 82/87 (94.25%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREALEIMS 274
            LA SHEVL+TVEEGSIGGFGSHV QF+ALDGLLDG +KWRPLVLPDRYIDHGSPADQLA+AGLTPSHIAATVFN+LGQ REAL IM+
Sbjct:  630 LASSHEVLLTVEEGSIGGFGSHVAQFMALDGLLDGKLKWRPLVLPDRYIDHGSPADQLAEAGLTPSHIAATVFNVLGQAREALAIMT 716          
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS_ARATH (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=CLA1 PE=1 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 1.178e-35
Identity = 71/83 (85.54%), Postives = 77/83 (92.77%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREAL 262
            LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDG +KWRP+VLPDRYIDHG+PADQLA+AGL PSHIAAT  N++G  REAL
Sbjct:  634 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGKLKWRPMVLPDRYIDHGAPADQLAEAGLMPSHIAATALNLIGAPREAL 716          
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS_RHOP5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain BisA53) GN=dxs PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.546e-19
Identity = 48/80 (60.00%), Postives = 58/80 (72.50%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTR 253
            LA+ HEVLITVEEGSIGGFGSHV+Q LA  G+LDG V+ R LVLPD ++DH +PA   A+AGL    I   VF  LG+ +
Sbjct:  554 LAREHEVLITVEEGSIGGFGSHVMQTLAEHGMLDGEVRMRSLVLPDEFMDHDTPAVMYARAGLDAKGIVKKVFEALGKDK 633          
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS_BRASO (1-deoxy-D-xylulose-5-phosphate synthase OS=Bradyrhizobium sp. (strain ORS278) GN=dxs PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.546e-19
Identity = 45/78 (57.69%), Postives = 58/78 (74.36%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 247
            LA+ HE+LIT+EEGSIGGFGSHV+Q+LA  G+LDG +K R +VLPD + DH +PA   A+AGL    I   VF +LG+
Sbjct:  554 LARDHEILITIEEGSIGGFGSHVMQYLADQGMLDGGLKMRSMVLPDEFQDHDTPAAMYARAGLDAKGIVRKVFEVLGK 631          
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS_RHILO (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium loti GN=dxs PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.019e-19
Identity = 48/82 (58.54%), Postives = 57/82 (69.51%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREA 259
            LA+SHEVL+TVEEG+IGGF SHV+QFLA +GLL+  +K RPLVLPD + DH  P    A AGL  + I  TVF  L  T  A
Sbjct:  553 LARSHEVLVTVEEGAIGGFASHVLQFLAHEGLLESGLKVRPLVLPDVFTDHAKPEKMYADAGLDAAGIVRTVFTALDHTARA 634          
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS_RHOPT (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain TIE-1) GN=dxs PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.637e-19
Identity = 46/78 (58.97%), Postives = 58/78 (74.36%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 247
            LA+ HEVL+T+EEGSIGGFGSHV+Q LA  G+LDG VK R LVLPD ++DH +P    A+AGL    I   VF++LG+
Sbjct:  554 LARDHEVLLTIEEGSIGGFGSHVMQTLAEHGMLDGEVKMRALVLPDVFMDHDNPVAMYARAGLDAKAIVKKVFDVLGK 631          
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS_RHOPA (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris GN=dxs PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.637e-19
Identity = 46/78 (58.97%), Postives = 58/78 (74.36%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 247
            LA+ HEVL+T+EEGSIGGFGSHV+Q LA  G+LDG VK R LVLPD ++DH +P    A+AGL    I   VF++LG+
Sbjct:  554 LARDHEVLLTIEEGSIGGFGSHVMQTLAEHGMLDGEVKMRALVLPDVFMDHDNPVAMYARAGLDAKAIVKKVFDVLGK 631          
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS_MESSB (1-deoxy-D-xylulose-5-phosphate synthase OS=Mesorhizobium sp. (strain BNC1) GN=dxs PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.444e-19
Identity = 46/82 (56.10%), Postives = 59/82 (71.95%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQTREA 259
            LA+ HEVL+TVEEGSIGGFG+HV+ FLA +GLL+  +K RPLV+PD ++D   P    A+AGL  + I  TVF  LGQ  +A
Sbjct:  566 LAREHEVLVTVEEGSIGGFGAHVLHFLAHEGLLENGLKVRPLVMPDIFMDQAKPEKMYAKAGLDAAGIVKTVFAALGQAEQA 647          
BLAST of EY649924 vs. ExPASy Swiss-Prot
Match: DXS_BRASB (1-deoxy-D-xylulose-5-phosphate synthase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=dxs PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.498e-19
Identity = 45/78 (57.69%), Postives = 57/78 (73.08%), Query Frame = 2
Query:   14 LAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGTVKWRPLVLPDRYIDHGSPADQLAQAGLTPSHIAATVFNILGQ 247
            LA+ HE+LIT+EEGSIGGFGSHV+Q+LA  G+LDG +K R +VLPD + DH +PA   A+AGL    I   VF  LG+
Sbjct:  554 LAREHEILITIEEGSIGGFGSHVMQYLADQGMLDGGLKMRSMVLPDEFQDHDTPAAMYARAGLDAKGIVRKVFEALGK 631          
The following BLAST results are available for this feature:
BLAST of EY649924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
DXS_CAPAN1.589e-4089.66Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_ORYSJ8.718e-3987.36Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_ARATH1.178e-3585.54Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_RHOP51.546e-1960.001-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops... [more]
DXS_BRASO1.546e-1957.691-deoxy-D-xylulose-5-phosphate synthase OS=Bradyrh... [more]
DXS_RHILO2.019e-1958.541-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi... [more]
DXS_RHOPT2.637e-1958.971-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops... [more]
DXS_RHOPA2.637e-1958.971-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops... [more]
DXS_MESSB3.444e-1956.101-deoxy-D-xylulose-5-phosphate synthase OS=Mesorhi... [more]
DXS_BRASB4.498e-1957.691-deoxy-D-xylulose-5-phosphate synthase OS=Bradyrh... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-005-B03-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649924 ID=EY649924; Name=EY649924; organism=Citrus sinensis; type=EST; length=518bp
CCACGCGTCCGGCTTGGCAAAATCACATGAAGTTTTGATTACTGTGGAGG
AAGGATCAATTGGGGGTTTTGGATCACATGTTGTTCAGTTCCTCGCTCTC
GATGGTCTTCTTGATGGCACGGTCAAGTGGAGACCACTTGTACTCCCCGA
TCGATATATTGACCATGGATCACCTGCTGACCAGTTGGCTCAAGCTGGTC
TTACACCATCCCACATTGCGGCAACAGTATTCAACATTCTTGGACAGACA
AGAGAGGCTCTTGAGATAATGTCATTCAAAAGCTGAAGAATACACAATTA
TTGCCAATATTCTCCACAATGTACAAATATAAGAACTGTAAGAAGTTATA
TACATTTCAGCCTCGGCACTGTAGAAATTGCTTTTGTTAGCATTGGTTTA
TTTAGTTTACATCAACCACATCATTCAACTTCACCAGACACCAACTTGAT
TAGAAATCAAAGAGTACTTCATGATTAGAAGTTCANNNNNNAAAANNAAA
AAAAAAAAAAAAAAAANG
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