EY666301

Overview
NameEY666301
Unique NameEY666301
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length895
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY666301 vs. ExPASy Swiss-Prot
Match: L2HDH_PONAB (L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Pongo abelii GN=L2HGDH PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.441e-22
Identity = 58/142 (40.85%), Postives = 81/142 (57.04%), Query Frame = 2
Query:  179 VLDSGPTFGTGTSSRNSEVIHAGIYYPLNSLKAIFCVRGRELLYKYCSEHEVPHKQIGKLIVATRPLEIPKLNDLMKRGTANGVHGLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSV 604
            VL+         +  NS VIH+GIYY   SLKA  CV+G  LLY+YC +  + +KQ GKLIVA    EIP+L  L +RG  NGV GLR+++  +  K EP  + + A+  P +GIVD   + LS   + ++ G +   N  V
Sbjct:   78 VLEKEKDLAVHQTGHNSGVIHSGIYYKPESLKAKLCVQGAALLYEYCQQKGISYKQCGKLIVAVEQEEIPRLQALYERGLQNGVQGLRLIQQDDIKKKEPYCRGLMAIDCPHTGIVDYRQVALSFAQDFQDAGGSVLTNFEV 219          
BLAST of EY666301 vs. ExPASy Swiss-Prot
Match: L2HDH_NEMVE (L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Nematostella vectensis GN=v1g172254 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.441e-22
Identity = 55/117 (47.01%), Postives = 73/117 (62.39%), Query Frame = 2
Query:  179 VLDSGPTFGTGTSSRNSEVIHAGIYYPLNSLKAIFCVRGRELLYKYCSEHEVPHKQIGKLIVATRPLEIPKLNDLMKRGTANGVHGLRMLEGFEAMKMEPELQCVKALLSPASGIVD 529
            VL+         S  NS VIH GIYY   SLKA  CV+G +L Y+YC EH +P+K+ GKLIVA    EIP LN+L +RG  NGV  L M++     ++EP  + + A++SP +GIVD
Sbjct:   69 VLEKEKELSMHQSGHNSGVIHCGIYYTPGSLKAKLCVQGLDLTYQYCDEHNIPYKKCGKLIVAVEDKEIPLLNNLYERGKKNGVKDLTMVDKRGIKEIEPHCEGMFAIVSPNTGIVD 185          
BLAST of EY666301 vs. ExPASy Swiss-Prot
Match: L2HDH_HUMAN (L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Homo sapiens GN=L2HGDH PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 3.209e-22
Identity = 58/144 (40.28%), Postives = 81/144 (56.25%), Query Frame = 2
Query:  179 VLDSGPTFGTGTSSRNSEVIHAGIYYPLNSLKAIFCVRGRELLYKYCSEHEVPHKQIGKLIVATRPLEIPKLNDLMKRGTANGVHGLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIG 610
            VL+         +  NS VIH+GIYY   SLKA  CV+G  LLY+YC +  + +KQ GKLIVA    EIP+L  L ++G  NGV GLR+++  +  K EP  + + A+  P +GIVD   + LS   + +  G +   N  V G
Sbjct:   78 VLEKEKDLAVHQTGHNSGVIHSGIYYKPESLKAKLCVQGAALLYEYCQQKGISYKQCGKLIVAVEQEEIPRLQALYEKGLQNGVPGLRLIQQEDIKKKEPYCRGLMAIDCPHTGIVDYRQVALSFAQDFQEAGGSVLTNFEVKG 221          
BLAST of EY666301 vs. ExPASy Swiss-Prot
Match: L2HDH_BOVIN (L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Bos taurus GN=L2HGDH PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.474e-22
Identity = 56/142 (39.44%), Postives = 80/142 (56.34%), Query Frame = 2
Query:  179 VLDSGPTFGTGTSSRNSEVIHAGIYYPLNSLKAIFCVRGRELLYKYCSEHEVPHKQIGKLIVATRPLEIPKLNDLMKRGTANGVHGLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSV 604
            VL+         +  NS VIH+GIYY   SLKA  CV+G  L+Y+YC++  + +KQ GKLIVA    EIP+L  L +RG  NGV GLR+++  +  K EP  + + A+  P +GIVD   +  S   + +  G +   N  V
Sbjct:   78 VLEKEKNLAVHQTGHNSGVIHSGIYYKPESLKAKLCVQGAALIYEYCNQKGISYKQCGKLIVAVEQEEIPRLQALYERGLQNGVQGLRLIQQEDIKKKEPYCRGLMAIDCPYTGIVDYRQVAFSFAKDFQEAGGSVLTNFEV 219          
BLAST of EY666301 vs. ExPASy Swiss-Prot
Match: L2HDH_MOUSE (L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Mus musculus GN=L2hgdh PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.080e-21
Identity = 56/149 (37.58%), Postives = 83/149 (55.70%), Query Frame = 2
Query:  164 GREVLVLDSGPTFGTGTSSRNSEVIHAGIYYPLNSLKAIFCVRGRELLYKYCSEHEVPHKQIGKLIVATRPLEIPKLNDLMKRGTANGVHGLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIG 610
            G  + V++         +  NS VIH+GIYY   SLKA  CV G  L+Y+YC+   +P++Q GKLIVA    EIP+L  L +RG  NGV GLR+++  +  K EP  + + A+  P +GIV+   + LS   + +  G +   +  V G
Sbjct:   74 GLSIGVVEKEKDLALHQTGHNSGVIHSGIYYKPESLKAKLCVEGAALIYEYCNLKGIPYRQCGKLIVAVEQEEIPRLQALYERGLQNGVEGLRLIQQEDIKKKEPYCRGLMAIDCPYTGIVNYQQVALSFAQDFQEAGGSILRDFEVKG 222          
BLAST of EY666301 vs. ExPASy Swiss-Prot
Match: L2HDH_CAEEL (L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=Y45G12B.3 PE=2 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 1.348e-20
Identity = 50/120 (41.67%), Postives = 73/120 (60.83%), Query Frame = 2
Query:  170 EVLVLDSGPTFGTGTSSRNSEVIHAGIYYPLNSLKAIFCVRGRELLYKYCSEHEVPHKQIGKLIVATRPLEIPKLNDLMKRGTANGVHGLRMLEGFEAMKMEPELQCVKALLSPASGIVD 529
            +V +++         S  NS VIHAGIYY   SLKA  CV G +L Y++  + +VP+K+ GKLIVA  P E+P+L+ L  R   NG   + M++  +  ++EP  + +KAL SP +GIVD
Sbjct:   52 KVALIEKEKELAVHQSGHNSGVIHAGIYYTPGSLKAKLCVEGLDLSYEFFDKEKVPYKKTGKLIVAVEPEEVPRLDALFSRAQTNGCRDIEMIDSSKITELEPHCRGLKALWSPHTGIVD 171          
BLAST of EY666301 vs. ExPASy Swiss-Prot
Match: L2HDH_DICDI (L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=l2hgdh PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.663e-19
Identity = 48/122 (39.34%), Postives = 78/122 (63.93%), Query Frame = 2
Query:  170 EVLVLDSGPTFGTGTSSRNSEVIHAGIYYPLNSLKAIFCVRGRELLYKYCSEHEVPHKQIGKLIVATRPLEIPKLNDLMKRGTANGVHGLRMLEGFE-AMKMEPELQ-CVKALLSPASGIVD 529
            ++++L+         SS NS VIH GIYY   SL+A  C +G +L+Y YC+E+++ ++  GKLIVAT+  E  +L  L KRG  NGV  +++LE  E  + +EP +   ++A+ +P++GI+D
Sbjct:   52 KIVILEKENEIAPHQSSHNSGVIHCGIYYKPGSLRAKLCTKGSKLMYDYCNENQINYENCGKLIVATKKEEFQQLEQLYKRGIENGVPNIKLLESKEQLLSIEPFINGGLRAIHTPSTGIID 173          
BLAST of EY666301 vs. ExPASy Swiss-Prot
Match: L2HDH_CAEBR (L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Caenorhabditis briggsae GN=CBG06643 PE=3 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 1.262e-18
Identity = 47/105 (44.76%), Postives = 65/105 (61.90%), Query Frame = 2
Query:  215 SSRNSEVIHAGIYYPLNSLKAIFCVRGRELLYKYCSEHEVPHKQIGKLIVATRPLEIPKLNDLMKRGTANGVHGLRMLEGFEAMKMEPELQCVKALLSPASGIVD 529
            S  NS VIHAGIYY   SLKA  CV G +L Y++  + ++P+K+ GKLIVA    E+P+L+ L  R   NG   + M++      +EP  + +KAL SP +GIVD
Sbjct:   67 SGHNSGVIHAGIYYTPGSLKAKLCVEGLDLSYEFFDKEKIPYKKTGKLIVAVEQEEVPRLDALFARAQTNGCRDIEMIDSKRITDIEPHCKGLKALWSPHTGIVD 171          
BLAST of EY666301 vs. ExPASy Swiss-Prot
Match: YGAF_ECOLI (Uncharacterized protein ygaF OS=Escherichia coli (strain K12) GN=ygaF PE=1 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 1.596e-13
Identity = 42/132 (31.82%), Postives = 67/132 (50.76%), Query Frame = 2
Query:  215 SSRNSEVIHAGIYYPLNSLKAIFCVRGRELLYKYCSEHEVPHKQIGKLIVATRPLEIPKLNDLMKRGTANGVHGLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIG 610
            +  NS VIHAG+YY   SLKA FC+ G      +C ++ + +   GK++VAT  LE+ ++  L +R  ANG+     L   E  + EP +  +  +  P+SGIV    +  ++    ++ G     N  V G
Sbjct:   43 TGHNSGVIHAGVYYTPGSLKAQFCLAGNRATKAFCDQNGIRYDNCGKMLVATSDLEMERMRALWERTAANGIE-REWLNADELREREPNITGLGGIFVPSSGIVSYRDVTAAMAKIFQSRGGEIIYNAEVSG 173          
The following BLAST results are available for this feature:
BLAST of EY666301 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
L2HDH_PONAB1.441e-2240.85L-2-hydroxyglutarate dehydrogenase, mitochondrial ... [more]
L2HDH_NEMVE1.441e-2247.01L-2-hydroxyglutarate dehydrogenase, mitochondrial ... [more]
L2HDH_HUMAN3.209e-2240.28L-2-hydroxyglutarate dehydrogenase, mitochondrial ... [more]
L2HDH_BOVIN5.474e-2239.44L-2-hydroxyglutarate dehydrogenase, mitochondrial ... [more]
L2HDH_MOUSE2.080e-2137.58L-2-hydroxyglutarate dehydrogenase, mitochondrial ... [more]
L2HDH_CAEEL1.348e-2041.67L-2-hydroxyglutarate dehydrogenase, mitochondrial ... [more]
L2HDH_DICDI9.663e-1939.34L-2-hydroxyglutarate dehydrogenase, mitochondrial ... [more]
L2HDH_CAEBR1.262e-1844.76L-2-hydroxyglutarate dehydrogenase, mitochondrial ... [more]
YGAF_ECOLI1.596e-1331.82Uncharacterized protein ygaF OS=Escherichia coli (... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-102-021-D03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY666301 ID=EY666301; Name=EY666301; organism=Citrus sinensis; type=EST; length=895bp
CCACGCGTCCGAATCAGAAGAAATGCTGAAACACACGTTGAAAAGCCTGA
GGAGGATGTCAACAACCACCGCCGCTGCCCCGGCCGCGAAAGAGAAAGTT
GAGTGTGTAGTGATTGGAGCCGGCGTTGTGGGCCTCGCGGTTGCAAGAGA
GCTGGCGTTGAAGGGCAGAGAGGTGCTGGTCCTCGATTCGGGTCCCACCT
TCGGCACCGGCACTAGCTCTCGCAACAGCGAAGTCATTCACGCCGGCATC
TACTATCCTCTCAATTCCCTCAAGGCAATTTTCTGCGTGAGAGGAAGAGA
ATTACTGTACAAGTATTGCTCTGAACATGAGGTCCCTCATAAACAGATTG
GTAAACTAATAGTTGCTACTAGACCATTAGAGATTCCAAAGTTGAATGAT
CTGATGAAGCGCGGAACTGCAAACGGTGTTCACGGCCTCAGGATGTTGGA
GGGTTTCGAAGCCATGAAAATGGAACCTGAATTGCAATGTGTGAAGGCCT
TACTGTCACCTGCGTCTGGGATTGTTGATAGTCATTCCCTAATGCTATCC
CTAGTGGGGGAAGCCGAAAATCATGGGACAACTTTTTCTAATAATACATC
AGTCATTGGTGGCCATCTTGAAGGAAATTGTATGAATGTTTATATATCTG
GAAGCAAAAATCTTCGGAACTGGGATGGTGTATCTCCCGTTCACCCGGAG
CTTACACTTATTCCTAAGCTTGTAATGACTCTGCCGGGTTAGGTGCCCAG
CTCTTTGAAAGAAATTATTGGCCAAATAATGGTTTATCCCCCTGCGTATA
TGCCCGAGTGGCTACTTTTCCTTGCAAAAATAAGGTGGTCCTTTAAACGT
TGGATTTCCTTTACCTGAGGAGAGGGGCTTGCCAAATTGTTCTCT
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