FC921871

Overview
NameFC921871
Unique NameFC921871
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length265
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13690 contig Csv1_Contig13690:180..444. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921871 vs. ExPASy Swiss-Prot
Match: MDHG_CITLA (Malate dehydrogenase, glyoxysomal OS=Citrullus lanatus PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.873e-15
Identity = 38/43 (88.37%), Postives = 41/43 (95.35%), Query Frame = 1
Query:    1 RLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 129
            RLGR GIEE+YSLGPLNEYER GLEKAKKELAGSI+KGVSF+R
Sbjct:  313 RLGRNGIEEVYSLGPLNEYERIGLEKAKKELAGSIEKGVSFIR 355          
BLAST of FC921871 vs. ExPASy Swiss-Prot
Match: MDHG_CUCSA (Malate dehydrogenase, glyoxysomal OS=Cucumis sativus GN=MDHG PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.628e-15
Identity = 37/43 (86.05%), Postives = 41/43 (95.35%), Query Frame = 1
Query:    1 RLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 129
            RLGR GI+E+YSLGPLNEYER GLEKAKKELAGSI+KGVSF+R
Sbjct:  313 RLGRNGIDEVYSLGPLNEYERIGLEKAKKELAGSIEKGVSFIR 355          
BLAST of FC921871 vs. ExPASy Swiss-Prot
Match: MDHG1_ARATH (Malate dehydrogenase, glyoxysomal OS=Arabidopsis thaliana GN=At5g09660 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.282e-14
Identity = 36/44 (81.82%), Postives = 38/44 (86.36%), Query Frame = 1
Query:    1 RLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 132
            RLGR G EE+Y LGPLNEYER GLEKAK ELAGSIQKGV F+RK
Sbjct:  311 RLGRTGAEEVYQLGPLNEYERIGLEKAKDELAGSIQKGVEFIRK 354          
BLAST of FC921871 vs. ExPASy Swiss-Prot
Match: MDHG2_BRANA (Malate dehydrogenase 2, glyoxysomal OS=Brassica napus GN=MDH2 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.592e-14
Identity = 35/44 (79.55%), Postives = 39/44 (88.64%), Query Frame = 1
Query:    1 RLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 132
            RLGR G EE++ LGPLNEYER GLEKAK+ELAGSIQKGV F+RK
Sbjct:  315 RLGRTGAEEVFQLGPLNEYERVGLEKAKEELAGSIQKGVDFIRK 358          
BLAST of FC921871 vs. ExPASy Swiss-Prot
Match: MDHG1_BRANA (Malate dehydrogenase 1, glyoxysomal OS=Brassica napus GN=MDH1 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 5.592e-14
Identity = 35/44 (79.55%), Postives = 39/44 (88.64%), Query Frame = 1
Query:    1 RLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 132
            RLGR G EE++ LGPLNEYER GLEKAK+ELAGSIQKGV F+RK
Sbjct:  315 RLGRTGAEEVFQLGPLNEYERVGLEKAKEELAGSIQKGVDFIRK 358          
BLAST of FC921871 vs. ExPASy Swiss-Prot
Match: MDHG_ORYSJ (Malate dehydrogenase, glyoxysomal OS=Oryza sativa subsp. japonica GN=Os12g0632700 PE=1 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 9.539e-14
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 1
Query:    1 RLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 132
            RLGR GIEEI SLGPLNE+ERAGLEKAKKELA SIQKGV+F+ K
Sbjct:  313 RLGRCGIEEILSLGPLNEFERAGLEKAKKELAESIQKGVAFINK 356          
BLAST of FC921871 vs. ExPASy Swiss-Prot
Match: MDHG_SOYBN (Malate dehydrogenase, glyoxysomal OS=Glycine max PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.377e-12
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = 1
Query:    1 RLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 132
            RLGR G+EEI  LGPLN+YER  LEKAKKELA SI+KG+SF+RK
Sbjct:  310 RLGRVGVEEILPLGPLNDYERESLEKAKKELAASIEKGISFIRK 353          
BLAST of FC921871 vs. ExPASy Swiss-Prot
Match: MDHG2_ARATH (Probable malate dehydrogenase, glyoxysomal OS=Arabidopsis thaliana GN=At2g22780 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.799e-12
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = 1
Query:    1 RLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK 132
            RLGR GI+E+Y LGPLNEYER GLEKAKKEL+ SI KGV+F +K
Sbjct:  311 RLGRCGIDEVYGLGPLNEYERMGLEKAKKELSVSIHKGVTFAKK 354          
The following BLAST results are available for this feature:
BLAST of FC921871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
MDHG_CITLA3.873e-1588.37Malate dehydrogenase, glyoxysomal OS=Citrullus lan... [more]
MDHG_CUCSA8.628e-1586.05Malate dehydrogenase, glyoxysomal OS=Cucumis sativ... [more]
MDHG1_ARATH4.282e-1481.82Malate dehydrogenase, glyoxysomal OS=Arabidopsis t... [more]
MDHG2_BRANA5.592e-1479.55Malate dehydrogenase 2, glyoxysomal OS=Brassica na... [more]
MDHG1_BRANA5.592e-1479.55Malate dehydrogenase 1, glyoxysomal OS=Brassica na... [more]
MDHG_ORYSJ9.539e-1484.09Malate dehydrogenase, glyoxysomal OS=Oryza sativa ... [more]
MDHG_SOYBN1.377e-1275.00Malate dehydrogenase, glyoxysomal OS=Glycine max P... [more]
MDHG2_ARATH1.799e-1275.00Probable malate dehydrogenase, glyoxysomal OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionC06053D04T7 RindPdigS Citrus sinensis cDNA clone C06053D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921871 ID=FC921871; Name=FC921871; organism=Citrus sinensis; type=EST; length=265bp
CGGCTTGGCCGTGCTGGAATTGAGGAAATTTACTCACTTGGCCCATTGAA
TGAGTATGAGAGGGCTGGTTTGGAGAAGGCAAAGAAAGAGTTAGCGGGAA
GCATTCAGAAGGGAGTCAGTTTTGTCAGGAAATGAGTAACCAATCACATG
GTGACTAATGATAATGGTTGTGCTTTTGTTGTTTGCCTCAAATATCTCAA
GATTACTTTCCCCAGAATAAGAGGTAGGGTCTTCGTTTTTCCATAATCAG
ATGGAATTAAGTTAG
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