FC921862
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC921862 vs. ExPASy Swiss-Prot
Match: TOP1_DAUCA (DNA topoisomerase 1 OS=Daucus carota GN=TOP1 PE=2 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 4.423e-27 Identity = 62/75 (82.67%), Postives = 66/75 (88.00%), Query Frame = 1 Query: 7 AASSFLKGQSGREKYEKARKLKDYIHSIRAA-YTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGC 228 AASS LKG+ REKYEK+RKLKDYI IRAA YTKDF S+D +RQIAVATYLIDKLALRAGNEKDDDEADTVGC Sbjct: 431 AASSSLKGKVTREKYEKSRKLKDYIEGIRAAAYTKDFASKDSKKRQIAVATYLIDKLALRAGNEKDDDEADTVGC 505
BLAST of FC921862 vs. ExPASy Swiss-Prot
Match: TOP1_ARATH (DNA topoisomerase 1 OS=Arabidopsis thaliana GN=TOP1 PE=1 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 1.332e-23 Identity = 54/73 (73.97%), Postives = 60/73 (82.19%), Query Frame = 1 Query: 10 ASSFLKGQSGREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGC 228 A S LKG S +EKYEKAR L D+I +IR YTK+F ++D RQIAVATYLIDKLALRAGNEKDDDEADTVGC Sbjct: 583 AGSSLKGLSDKEKYEKARNLTDHIDNIRTTYTKNFTAKDVKMRQIAVATYLIDKLALRAGNEKDDDEADTVGC 655
BLAST of FC921862 vs. ExPASy Swiss-Prot
Match: TOP1_SCHPO (DNA topoisomerase 1 OS=Schizosaccharomyces pombe GN=top1 PE=1 SV=2) HSP 1 Score: 91.2781 bits (225), Expect = 1.685e-18 Identity = 48/74 (64.86%), Postives = 51/74 (68.92%), Query Frame = 1 Query: 7 AASSFLKGQSGREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGC 228 AA S LKGQS +KYEK+RKLKDYI IR Y KD S RQ A YLID ALRAGNEK +DEADTVGC Sbjct: 409 AAGSSLKGQSDLKKYEKSRKLKDYIDDIRKGYRKDLKSELTVERQRGTAMYLIDVFALRAGNEKGEDEADTVGC 482
BLAST of FC921862 vs. ExPASy Swiss-Prot
Match: TOP1_YEAST (DNA topoisomerase 1 OS=Saccharomyces cerevisiae GN=TOP1 PE=1 SV=2) HSP 1 Score: 88.1965 bits (217), Expect = 1.426e-17 Identity = 47/76 (61.84%), Postives = 56/76 (73.68%), Query Frame = 1 Query: 1 RGAASSFLKGQSGREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGC 228 R AA+S LKGQS +K+EKAR+LK YI +IR YT++ S+ RQ AVA YLID ALRAG EK +DEADTVGC Sbjct: 360 RLAANSSLKGQSDYKKFEKARQLKSYIDAIRRDYTRNLKSKVMLERQKAVAIYLIDVFALRAGGEKSEDEADTVGC 435
BLAST of FC921862 vs. ExPASy Swiss-Prot
Match: TOP1_DICDI (DNA topoisomerase 1 OS=Dictyostelium discoideum GN=top1 PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 4.588e-16 Identity = 43/74 (58.11%), Postives = 52/74 (70.27%), Query Frame = 1 Query: 7 AASSFLKGQSGREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGC 228 A SS +KGQ+ R+K+E AR LK+ I IR Y K F +RQ+AVA YLID LALR GNEK +D+ADTVGC Sbjct: 524 APSSKIKGQADRKKFEVARGLKNCIGDIRKGYQKSFNDESTEKRQLAVALYLIDFLALRVGNEKGEDQADTVGC 597
BLAST of FC921862 vs. ExPASy Swiss-Prot
Match: TOP1_DROME (DNA topoisomerase 1 OS=Drosophila melanogaster GN=Top1 PE=1 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 7.826e-16 Identity = 43/72 (59.72%), Postives = 51/72 (70.83%), Query Frame = 1 Query: 13 SSFLKGQSGREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGC 228 SS LKG+ KYE AR+L I IRA Y ++ S++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGC Sbjct: 655 SSKLKGEKDHIKYETARRLDKVIDKIRATYRDEWKSKEMRVRQRAVALYFIDKLALRAGNEKDEDQADTVGC 726
BLAST of FC921862 vs. ExPASy Swiss-Prot
Match: TOP1_CANAL (DNA topoisomerase 1 OS=Candida albicans GN=TOP1 PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 7.826e-16 Identity = 44/76 (57.89%), Postives = 53/76 (69.74%), Query Frame = 1 Query: 1 RGAASSFLKGQSGREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGC 228 R A +S +KGQS +K+E ARKL+D++ SIR YTK S RQ+A A YLID ALRAG EK +DEADTVGC Sbjct: 370 RFANNSSVKGQSDFKKFETARKLRDHVDSIRKDYTKMLKSEKMQDRQMATAMYLIDVFALRAGGEKGEDEADTVGC 445
BLAST of FC921862 vs. ExPASy Swiss-Prot
Match: TOP1_CAEEL (DNA topoisomerase 1 OS=Caenorhabditis elegans GN=top-1 PE=2 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 1.335e-15 Identity = 46/73 (63.01%), Postives = 51/73 (69.86%), Query Frame = 1 Query: 13 SSFLKGQSGREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGC 228 SS +KG+ EKYE AR+LK I IR YT DF S++ RQ A A Y IDKLALRAGNEKD DE ADTVGC Sbjct: 474 SSKIKGEKDFEKYETARRLKKKIGGIRERYTDDFKSKEMRVRQRATALYFIDKLALRAGNEKDVDEAADTVGC 546
BLAST of FC921862 vs. ExPASy Swiss-Prot
Match: TOP1M_PANTR (DNA topoisomerase I, mitochondrial OS=Pan troglodytes GN=TOP1MT PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 8.652e-15 Identity = 41/72 (56.94%), Postives = 53/72 (73.61%), Query Frame = 1 Query: 16 SFLKGQSGREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGC 228 S LKG++ +K+E AR+L+ ++ IR+ Y D+ SR+ RQ AVA Y IDKLALRAGNEK+D E ADTVGC Sbjct: 269 SKLKGETAWQKFETARRLRGFVDEIRSQYRADWKSREMKTRQRAVALYFIDKLALRAGNEKEDGEAADTVGC 340
BLAST of FC921862 vs. ExPASy Swiss-Prot
Match: TOP1M_HUMAN (DNA topoisomerase I, mitochondrial OS=Homo sapiens GN=TOP1MT PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 8.652e-15 Identity = 41/72 (56.94%), Postives = 53/72 (73.61%), Query Frame = 1 Query: 16 SFLKGQSGREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGC 228 S LKG++ +K+E AR+L+ ++ IR+ Y D+ SR+ RQ AVA Y IDKLALRAGNEK+D E ADTVGC Sbjct: 269 SKLKGETAWQKFETARRLRGFVDEIRSQYRADWKSREMKTRQRAVALYFIDKLALRAGNEKEDGEAADTVGC 340 The following BLAST results are available for this feature:
BLAST of FC921862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 19
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Sequences
The
following sequences are available for this feature:
EST sequence >FC921862 ID=FC921862; Name=FC921862; organism=Citrus sinensis; type=EST; length=229bpback to top |