FC921862

Overview
NameFC921862
Unique NameFC921862
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length229
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921862 vs. ExPASy Swiss-Prot
Match: TOP1_DAUCA (DNA topoisomerase 1 OS=Daucus carota GN=TOP1 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.423e-27
Identity = 62/75 (82.67%), Postives = 66/75 (88.00%), Query Frame = 1
Query:    7 AASSFLKGQSGREKYEKARKLKDYIHSIRAA-YTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGC 228
            AASS LKG+  REKYEK+RKLKDYI  IRAA YTKDF S+D  +RQIAVATYLIDKLALRAGNEKDDDEADTVGC
Sbjct:  431 AASSSLKGKVTREKYEKSRKLKDYIEGIRAAAYTKDFASKDSKKRQIAVATYLIDKLALRAGNEKDDDEADTVGC 505          
BLAST of FC921862 vs. ExPASy Swiss-Prot
Match: TOP1_ARATH (DNA topoisomerase 1 OS=Arabidopsis thaliana GN=TOP1 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.332e-23
Identity = 54/73 (73.97%), Postives = 60/73 (82.19%), Query Frame = 1
Query:   10 ASSFLKGQSGREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGC 228
            A S LKG S +EKYEKAR L D+I +IR  YTK+F ++D   RQIAVATYLIDKLALRAGNEKDDDEADTVGC
Sbjct:  583 AGSSLKGLSDKEKYEKARNLTDHIDNIRTTYTKNFTAKDVKMRQIAVATYLIDKLALRAGNEKDDDEADTVGC 655          
BLAST of FC921862 vs. ExPASy Swiss-Prot
Match: TOP1_SCHPO (DNA topoisomerase 1 OS=Schizosaccharomyces pombe GN=top1 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 1.685e-18
Identity = 48/74 (64.86%), Postives = 51/74 (68.92%), Query Frame = 1
Query:    7 AASSFLKGQSGREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGC 228
            AA S LKGQS  +KYEK+RKLKDYI  IR  Y KD  S     RQ   A YLID  ALRAGNEK +DEADTVGC
Sbjct:  409 AAGSSLKGQSDLKKYEKSRKLKDYIDDIRKGYRKDLKSELTVERQRGTAMYLIDVFALRAGNEKGEDEADTVGC 482          
BLAST of FC921862 vs. ExPASy Swiss-Prot
Match: TOP1_YEAST (DNA topoisomerase 1 OS=Saccharomyces cerevisiae GN=TOP1 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.426e-17
Identity = 47/76 (61.84%), Postives = 56/76 (73.68%), Query Frame = 1
Query:    1 RGAASSFLKGQSGREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGC 228
            R AA+S LKGQS  +K+EKAR+LK YI +IR  YT++  S+    RQ AVA YLID  ALRAG EK +DEADTVGC
Sbjct:  360 RLAANSSLKGQSDYKKFEKARQLKSYIDAIRRDYTRNLKSKVMLERQKAVAIYLIDVFALRAGGEKSEDEADTVGC 435          
BLAST of FC921862 vs. ExPASy Swiss-Prot
Match: TOP1_DICDI (DNA topoisomerase 1 OS=Dictyostelium discoideum GN=top1 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.588e-16
Identity = 43/74 (58.11%), Postives = 52/74 (70.27%), Query Frame = 1
Query:    7 AASSFLKGQSGREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGC 228
            A SS +KGQ+ R+K+E AR LK+ I  IR  Y K F      +RQ+AVA YLID LALR GNEK +D+ADTVGC
Sbjct:  524 APSSKIKGQADRKKFEVARGLKNCIGDIRKGYQKSFNDESTEKRQLAVALYLIDFLALRVGNEKGEDQADTVGC 597          
BLAST of FC921862 vs. ExPASy Swiss-Prot
Match: TOP1_DROME (DNA topoisomerase 1 OS=Drosophila melanogaster GN=Top1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.826e-16
Identity = 43/72 (59.72%), Postives = 51/72 (70.83%), Query Frame = 1
Query:   13 SSFLKGQSGREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGC 228
            SS LKG+    KYE AR+L   I  IRA Y  ++ S++   RQ AVA Y IDKLALRAGNEKD+D+ADTVGC
Sbjct:  655 SSKLKGEKDHIKYETARRLDKVIDKIRATYRDEWKSKEMRVRQRAVALYFIDKLALRAGNEKDEDQADTVGC 726          
BLAST of FC921862 vs. ExPASy Swiss-Prot
Match: TOP1_CANAL (DNA topoisomerase 1 OS=Candida albicans GN=TOP1 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.826e-16
Identity = 44/76 (57.89%), Postives = 53/76 (69.74%), Query Frame = 1
Query:    1 RGAASSFLKGQSGREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGC 228
            R A +S +KGQS  +K+E ARKL+D++ SIR  YTK   S     RQ+A A YLID  ALRAG EK +DEADTVGC
Sbjct:  370 RFANNSSVKGQSDFKKFETARKLRDHVDSIRKDYTKMLKSEKMQDRQMATAMYLIDVFALRAGGEKGEDEADTVGC 445          
BLAST of FC921862 vs. ExPASy Swiss-Prot
Match: TOP1_CAEEL (DNA topoisomerase 1 OS=Caenorhabditis elegans GN=top-1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.335e-15
Identity = 46/73 (63.01%), Postives = 51/73 (69.86%), Query Frame = 1
Query:   13 SSFLKGQSGREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGC 228
            SS +KG+   EKYE AR+LK  I  IR  YT DF S++   RQ A A Y IDKLALRAGNEKD DE ADTVGC
Sbjct:  474 SSKIKGEKDFEKYETARRLKKKIGGIRERYTDDFKSKEMRVRQRATALYFIDKLALRAGNEKDVDEAADTVGC 546          
BLAST of FC921862 vs. ExPASy Swiss-Prot
Match: TOP1M_PANTR (DNA topoisomerase I, mitochondrial OS=Pan troglodytes GN=TOP1MT PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.652e-15
Identity = 41/72 (56.94%), Postives = 53/72 (73.61%), Query Frame = 1
Query:   16 SFLKGQSGREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGC 228
            S LKG++  +K+E AR+L+ ++  IR+ Y  D+ SR+   RQ AVA Y IDKLALRAGNEK+D E ADTVGC
Sbjct:  269 SKLKGETAWQKFETARRLRGFVDEIRSQYRADWKSREMKTRQRAVALYFIDKLALRAGNEKEDGEAADTVGC 340          
BLAST of FC921862 vs. ExPASy Swiss-Prot
Match: TOP1M_HUMAN (DNA topoisomerase I, mitochondrial OS=Homo sapiens GN=TOP1MT PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.652e-15
Identity = 41/72 (56.94%), Postives = 53/72 (73.61%), Query Frame = 1
Query:   16 SFLKGQSGREKYEKARKLKDYIHSIRAAYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDE-ADTVGC 228
            S LKG++  +K+E AR+L+ ++  IR+ Y  D+ SR+   RQ AVA Y IDKLALRAGNEK+D E ADTVGC
Sbjct:  269 SKLKGETAWQKFETARRLRGFVDEIRSQYRADWKSREMKTRQRAVALYFIDKLALRAGNEKEDGEAADTVGC 340          
The following BLAST results are available for this feature:
BLAST of FC921862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
TOP1_DAUCA4.423e-2782.67DNA topoisomerase 1 OS=Daucus carota GN=TOP1 PE=2 ... [more]
TOP1_ARATH1.332e-2373.97DNA topoisomerase 1 OS=Arabidopsis thaliana GN=TOP... [more]
TOP1_SCHPO1.685e-1864.86DNA topoisomerase 1 OS=Schizosaccharomyces pombe G... [more]
TOP1_YEAST1.426e-1761.84DNA topoisomerase 1 OS=Saccharomyces cerevisiae GN... [more]
TOP1_DICDI4.588e-1658.11DNA topoisomerase 1 OS=Dictyostelium discoideum GN... [more]
TOP1_DROME7.826e-1659.72DNA topoisomerase 1 OS=Drosophila melanogaster GN=... [more]
TOP1_CANAL7.826e-1657.89DNA topoisomerase 1 OS=Candida albicans GN=TOP1 PE... [more]
TOP1_CAEEL1.335e-1563.01DNA topoisomerase 1 OS=Caenorhabditis elegans GN=t... [more]
TOP1M_PANTR8.652e-1556.94DNA topoisomerase I, mitochondrial OS=Pan troglody... [more]
TOP1M_HUMAN8.652e-1556.94DNA topoisomerase I, mitochondrial OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionC06053C06T7 RindPdigS Citrus sinensis cDNA clone C06053C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921862 ID=FC921862; Name=FC921862; organism=Citrus sinensis; type=EST; length=229bp
CGCGGGGCGGCTAGTAGTTTCTTGAAGGGGCAAAGTGGCAGAGAGAAATA
TGAGAAAGCAAGAAAGCTAAAGGATTACATACATAGCATCAGAGCAGCTT
ACACAAAAGATTTTGTCAGTAGAGATGGAACAAGGAGACAAATAGCTGTT
GCAACCTATCTGATTGACAAACTAGCTCTTAGGGCGGGTAATGAGAAGGA
TGATGATGAAGCTGATACCGTTGGTTGCT
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