FC921859

Overview
NameFC921859
Unique NameFC921859
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length220
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1574 contig Csv1_Contig1574:1483..1702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921859 vs. ExPASy Swiss-Prot
Match: AROF_TOBAC (Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Nicotiana tabacum GN=DHAPS-1 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.359e-25
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 1
Query:    1 HLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKGKI 171
            HLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRK ++
Sbjct:  478 HLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRL 534          
BLAST of FC921859 vs. ExPASy Swiss-Prot
Match: AROG_SOLLC (Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.255e-25
Identity = 53/57 (92.98%), Postives = 56/57 (98.25%), Query Frame = 1
Query:    1 HLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKGKI 171
            HLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLEL+FIIAERLRK ++
Sbjct:  477 HLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELSFIIAERLRKRRL 533          
BLAST of FC921859 vs. ExPASy Swiss-Prot
Match: AROF_SOLTU (Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Solanum tuberosum GN=SHKA PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 5.255e-25
Identity = 53/57 (92.98%), Postives = 56/57 (98.25%), Query Frame = 1
Query:    1 HLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKGKI 171
            HLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLEL+FIIAERLRK ++
Sbjct:  477 HLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELSFIIAERLRKRRL 533          
BLAST of FC921859 vs. ExPASy Swiss-Prot
Match: AROF_ARATH (Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Arabidopsis thaliana GN=DHS1 PE=2 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 1.171e-24
Identity = 52/54 (96.30%), Postives = 54/54 (100.00%), Query Frame = 1
Query:    1 HLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRK 162
            HLEMTGQNVTECIGGSRTVT+DDLSSRYHTHCDPRLNASQSLELAFI+AERLRK
Sbjct:  463 HLEMTGQNVTECIGGSRTVTYDDLSSRYHTHCDPRLNASQSLELAFIVAERLRK 516          
BLAST of FC921859 vs. ExPASy Swiss-Prot
Match: AROG_ORYSJ (Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=DAHPS2 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.997e-24
Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = 1
Query:    1 HLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKGKI 171
            HLEMTGQNVTECIGGSRTVTFDDLS RYHTHCDPRLNASQSLELAFIIAERLR+ ++
Sbjct:  468 HLEMTGQNVTECIGGSRTVTFDDLSDRYHTHCDPRLNASQSLELAFIIAERLRRRRM 524          
BLAST of FC921859 vs. ExPASy Swiss-Prot
Match: AROG_ARATH (Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Arabidopsis thaliana GN=DHS2 PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 3.406e-24
Identity = 50/57 (87.72%), Postives = 56/57 (98.25%), Query Frame = 1
Query:    1 HLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKGKI 171
            HLEMTGQNVTEC+GGSRT+T++DLSSRYHTHCDPRLNASQSLELAFIIAERLRK ++
Sbjct:  440 HLEMTGQNVTECVGGSRTITYNDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRL 496          
BLAST of FC921859 vs. ExPASy Swiss-Prot
Match: AROF_ORYSJ (Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=DAHPS1 PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 5.810e-24
Identity = 51/57 (89.47%), Postives = 54/57 (94.74%), Query Frame = 1
Query:    1 HLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKGKI 171
            HLEMTGQNVTECIGGSRTVTFDDL  RYHTHCDPRLNASQSLEL+FIIAERLR+ +I
Sbjct:  482 HLEMTGQNVTECIGGSRTVTFDDLGDRYHTHCDPRLNASQSLELSFIIAERLRRKRI 538          
BLAST of FC921859 vs. ExPASy Swiss-Prot
Match: AROG_SOLTU (Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Solanum tuberosum GN=SHKB PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.294e-23
Identity = 49/57 (85.96%), Postives = 55/57 (96.49%), Query Frame = 1
Query:    1 HLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKGKI 171
            HLEMTGQNVTECIGGSRTVT+DDL SRYHTHCDPRLNASQSLEL+FI+AERLR+ ++
Sbjct:  450 HLEMTGQNVTECIGGSRTVTYDDLGSRYHTHCDPRLNASQSLELSFIVAERLRRRRM 506          
BLAST of FC921859 vs. ExPASy Swiss-Prot
Match: AROF_SOLLC (Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.294e-23
Identity = 49/57 (85.96%), Postives = 55/57 (96.49%), Query Frame = 1
Query:    1 HLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKGKI 171
            HLEMTGQNVTECIGGSRTVT+DDL SRYHTHCDPRLNASQSLEL+FI+AERLR+ ++
Sbjct:  450 HLEMTGQNVTECIGGSRTVTYDDLGSRYHTHCDPRLNASQSLELSFIVAERLRRRRM 506          
BLAST of FC921859 vs. ExPASy Swiss-Prot
Match: AROF_CATRO (Probable phospho-2-dehydro-3-deoxyheptonate aldolase, chloroplastic OS=Catharanthus roseus GN=DHS1 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 1.810e-17
Identity = 39/45 (86.67%), Postives = 43/45 (95.56%), Query Frame = 1
Query:   28 TECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRK 162
            TEC+GGSRT+T+DD  +RYHTHCDPRLNASQSLELAFIIAERLRK
Sbjct:  439 TECVGGSRTITYDDRQTRYHTHCDPRLNASQSLELAFIIAERLRK 483          
The following BLAST results are available for this feature:
BLAST of FC921859 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
AROF_TOBAC2.359e-2594.74Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chl... [more]
AROG_SOLLC5.255e-2592.98Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chl... [more]
AROF_SOLTU5.255e-2592.98Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chl... [more]
AROF_ARATH1.171e-2496.30Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chl... [more]
AROG_ORYSJ1.997e-2491.23Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chl... [more]
AROG_ARATH3.406e-2487.72Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chl... [more]
AROF_ORYSJ5.810e-2489.47Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chl... [more]
AROG_SOLTU1.294e-2385.96Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chl... [more]
AROF_SOLLC1.294e-2385.96Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chl... [more]
AROF_CATRO1.810e-1786.67Probable phospho-2-dehydro-3-deoxyheptonate aldola... [more]

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Properties
Property NameValue
Genbank descriptionC06053C03T7 RindPdigS Citrus sinensis cDNA clone C06053C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921859 ID=FC921859; Name=FC921859; organism=Citrus sinensis; type=EST; length=220bp
CATTTGGAGATGACAGGCCAGAATGTGACAGAGTGCATCGGTGGGTCAAG
AACAGTGACATTCGACGACTTGAGTTCACGCTACCACACCCACTGTGACC
CTAGGCTCAATGCTTCACAGTCACTTGAGCTTGCCTTCATCATTGCCGAG
CGCCTCAGAAAGGGGAAGATTAGCTCACAGCAACCTCTTGCCTCTTCTTC
TCTCCTGTAGAATGGCCCGA
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