CX676125

Overview
NameCX676125
Unique NameCX676125
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length645
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676125 vs. ExPASy Swiss-Prot
Match: ASP1_ORYSI (Aspartic proteinase Asp1 OS=Oryza sativa subsp. indica GN=ASP1 PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 2.641e-21
Identity = 59/168 (35.12%), Postives = 91/168 (54.17%), Query Frame = 3
Query:   45 LKINYGSSPLNLGARNSRVGWALFDTGSSYTYFTKQAYSELIASLKEVSSNGLV----LDASDPTLPVCWRAKFPIRSIVDVKQYFKTLTLHF--GSKWQIVSTKFHISPEGYLVISKKGNICLGILDGSEVHN--GSTIILGDISLRGQLVVYDNVNKRIGWAKSHC 524
            L+ N  S P++           +FD+G++YTYF  Q Y   ++ +K   S        +   D  L VCW+ K  IR+I +VK+ F++L+L F  G K         I PE YL+IS++G++CLGILDGS+ H     T ++G I++  Q+V+YD+    +GW    C
Sbjct:  238 LQFNSNSKPISAAPME-----VIFDSGATYTYFALQPYHATLSVVKSTLSKECKFLTEVKEKDRALTVCWKGKDKIRTIDEVKKCFRSLSLKFADGDK----KATLEIPPEHYLIISQEGHVCLGILDGSKEHPSLAGTNLIGGITMLDQMVIYDSERSLLGWVNYQC 396          
BLAST of CX676125 vs. ExPASy Swiss-Prot
Match: ASP1_ORYSJ (Aspartic proteinase Asp1 OS=Oryza sativa subsp. japonica GN=ASP1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.506e-20
Identity = 53/146 (36.30%), Postives = 84/146 (57.53%), Query Frame = 3
Query:  111 LFDTGSSYTYFTKQAYSELIASLKEVSSNGLV----LDASDPTLPVCWRAKFPIRSIVDVKQYFKTLTLHF--GSKWQIVSTKFHISPEGYLVISKKGNICLGILDGSEVH--NGSTIILGDISLRGQLVVYDNVNKRIGWAKSHC 524
            +FD+G++YTYF  Q Y   ++ +K   ++       +   D  L VCW+ K  I +I +VK+ F++L+L F  G K         I PE YL+IS++G++CLGILDGS+ H     T ++G I++  Q+V+YD+    +GW    C
Sbjct:  255 IFDSGATYTYFAAQPYQATLSVVKSTLNSECKFLTEVTEKDRALTVCWKGKDKIVTIDEVKKCFRSLSLEFADGDK----KATLEIPPEHYLIISQEGHVCLGILDGSKEHLSLAGTNLIGGITMLDQMVIYDSERSLLGWVNYQC 396          
The following BLAST results are available for this feature:
BLAST of CX676125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ASP1_ORYSI2.641e-2135.12Aspartic proteinase Asp1 OS=Oryza sativa subsp. in... [more]
ASP1_ORYSJ6.506e-2036.30Aspartic proteinase Asp1 OS=Oryza sativa subsp. ja... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_67C08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-67C08-E15-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676125 ID=CX676125; Name=CX676125; organism=Citrus sinensis; type=EST; length=645bp
CCATGCTTGACAGTCCTTTCATGGAGCTTTACCACACAGAGATCTTGAAA
ATAAATTATGGAAGTAGCCCACTGAATTTAGGTGCGCGAAACAGTCGAGT
AGGATGGGCACTGTTTGATACCGGCAGTTCTTATACCTACTTCACAAAAC
AAGCGTATTCTGAATTGATTGCTTCTCTTAAAGAAGTTTCTAGCAATGGA
CTTGTCCTAGATGCATCTGATCCAACATTGCCTGTCTGTTGGCGGGCTAA
ATTTCCCATCAGGTCCATTGTGGATGTGAAGCAGTACTTTAAGACTCTGA
CACTTCATTTTGGGAGCAAATGGCAGATTGTTTCCACAAAGTTTCACATT
TCTCCAGAGGGGTACTTGGTCATTAGTAAGAAAGGCAACATATGCTTGGG
CATTCTTGATGGAAGCGAAGTACATAATGGATCCACAATTATACTTGGAG
ATATCTCACTGCGTGGACAGTTGGTTGTGTATGATAACGTTAATAAGAGG
ATCGGGTGGGCAAAATCACATTGCATGAACCCTGGAAGATTCAAGAGCCT
GCCATTCTTGGAGGGATAGATTGGTTTGGGAATAAGCATAATAACAGTTT
TGTATTATGTCTCCGTATATTATACTTCAGTGTGTACACCCCCGC
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