CX676124

Overview
NameCX676124
Unique NameCX676124
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676124 vs. ExPASy Swiss-Prot
Match: ASP1_ORYSI (Aspartic proteinase Asp1 OS=Oryza sativa subsp. indica GN=ASP1 PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.285e-20
Identity = 55/146 (37.67%), Postives = 83/146 (56.85%), Query Frame = -1
Query:  204 LFDTGRSYTYFTKQAYSELIASLKEVSSNGLV----LDASDPTLPVCWRAKFPIRSIVDVKQYFKTLTLHF--GSKWQIVSTKFHISPEGYLVISKKGNICLGILDGSEVHN--GSTIILGDISLRGQLVVYDNVNKRIGWAKSHC 617
            +FD+G +YTYF  Q Y   ++ +K   S        +   D  L VCW+ K  IR+I +VK+ F++L+L F  G K         I PE YL+IS++G++CLGILDGS+ H     T ++G I++  Q+V+YD+    +GW    C
Sbjct:  255 IFDSGATYTYFALQPYHATLSVVKSTLSKECKFLTEVKEKDRALTVCWKGKDKIRTIDEVKKCFRSLSLKFADGDK----KATLEIPPEHYLIISQEGHVCLGILDGSKEHPSLAGTNLIGGITMLDQMVIYDSERSLLGWVNYQC 396          
BLAST of CX676124 vs. ExPASy Swiss-Prot
Match: ASP1_ORYSJ (Aspartic proteinase Asp1 OS=Oryza sativa subsp. japonica GN=ASP1 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.088e-19
Identity = 53/146 (36.30%), Postives = 83/146 (56.85%), Query Frame = -1
Query:  204 LFDTGRSYTYFTKQAYSELIASLKEVSSNGLV----LDASDPTLPVCWRAKFPIRSIVDVKQYFKTLTLHF--GSKWQIVSTKFHISPEGYLVISKKGNICLGILDGSEVH--NGSTIILGDISLRGQLVVYDNVNKRIGWAKSHC 617
            +FD+G +YTYF  Q Y   ++ +K   ++       +   D  L VCW+ K  I +I +VK+ F++L+L F  G K         I PE YL+IS++G++CLGILDGS+ H     T ++G I++  Q+V+YD+    +GW    C
Sbjct:  255 IFDSGATYTYFAAQPYQATLSVVKSTLNSECKFLTEVTEKDRALTVCWKGKDKIVTIDEVKKCFRSLSLEFADGDK----KATLEIPPEHYLIISQEGHVCLGILDGSKEHLSLAGTNLIGGITMLDQMVIYDSERSLLGWVNYQC 396          
The following BLAST results are available for this feature:
BLAST of CX676124 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ASP1_ORYSI1.285e-2037.67Aspartic proteinase Asp1 OS=Oryza sativa subsp. in... [more]
ASP1_ORYSJ1.088e-1936.30Aspartic proteinase Asp1 OS=Oryza sativa subsp. ja... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_67C08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-67C08-E15-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676124 ID=CX676124; Name=CX676124; organism=Citrus sinensis; type=EST; length=638bp
TTTTATACATACAAAGATGCTGTTTTCTCCCATTCAATCGCAAGAATATA
TAAGGTTATATTCTGTACATACGTTCATACATGCGGGGGTGTACACACTG
AAGTATAATATACGGAGACATAATACAAAACTGTTATTATGCTTATTCCC
AAACCAATCTATCCCTCCAAGAATGGCAGGCTCTTGAATCTTCCAGGGTT
CATGCAATGTGATTTTGCCCACCCGATCCTCTTATTAACGTTATCATACA
CAACCAACTGTCCACGCAGTGAGATATCTCCAAGTATAATTGTGGATCCA
TTATGTACTTCGCTTCCATCAAGAATGCCCAAGCATATGTTGCCTTTCTT
ACTAATGACCAAGTACCCCTCTGGAGAAATGTGAAACTTTGTGGAAACAA
TCTGCCATTTGCTCCCAAAATGAAGTGTCAGAGTCTTAAAGTACTGCTTC
ACATCCACAATGGACCTGATGGGAAATTTAGCCCGCCAACAGACAGGCAA
TGTTGGATCAGATGCATCTAGGACAAGTCCATTGCTAGAAACTTCTTTAA
GAGAAGCAATCAATTCAGAATACGCTTGTTTTGTGAAGTAGGTATAAGAC
CTGCCGGTATCAAACAGTGCCCATCCAACTCGACTGTT
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