CX676123

Overview
NameCX676123
Unique NameCX676123
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length400
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX676123 vs. ExPASy Swiss-Prot
Match: RTNLH_ARATH (Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.435e-14
Identity = 37/60 (61.67%), Postives = 44/60 (73.33%), Query Frame = 2 
Query:    2 VAAVIGSWCNLLTVLYIGFVAAHTLPVLYEKHEDKVDSXXXXXXXXXXXXYKKLDSGFLS 181
            VAA++GS CN LTVLYIGFV AHT+PVLYE++ED+VD             YKKLD+GFLS
Sbjct:  175 VAAMVGSCCNFLTVLYIGFVGAHTMPVLYERYEDEVDGFMDSMIMKFHSHYKKLDTGFLS 234
The following BLAST results are available for this feature:
BLAST of CX676123 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RTNLH_ARATH1.435e-1461.67Reticulon-like protein B8 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_67C07_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-67C07-E13-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676123 ID=CX676123; Name=CX676123; organism=Citrus sinensis; type=EST; length=400bp
GGTTGCTGCTGTGATAGGGAGCTGGTGTAACCTTTTGACCGTTCTATATA
TTGGTTTTGTTGCTGCCCATACATTACCAGTCCTGTATGAGAAGCATGAA
GATAAAGTTGACAGCTTTCTGAACAATGTCTTCCAGCAGCTCCAGAATCA
GTACAAGAAGCTTGATTCAGGTTTCCTCAGCAAAATCCCCAAGGGCAAGT
TCAAAGGGAAGAAAAGCGAATAGATCGATTGATCAAACATTAGATTTTAC
ATATCCCCCTTGCCATGACTAGTGATGGAACGTAACGACAACATTGTCAT
ATTATTGATGTTAATTATGGTGGAATTATGTATTATTATAGAATATTGAC
CTGGTGAATTTATAAGAGTCCAAATAACTACTAATCCCTTTTTCAAAAAA
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