CX676122

Overview
NameCX676122
Unique NameCX676122
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length404
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX676122 vs. ExPASy Swiss-Prot
Match: RTNLH_ARATH (Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.477e-14
Identity = 37/60 (61.67%), Postives = 44/60 (73.33%), Query Frame = -2 
Query:  221 VAAVIGSWCNLLTVLYIGFVAAHTLPVLYEKHEDKVDSXXXXXXXXXXXQYKKLDSGFLS 400
            VAA++GS CN LTVLYIGFV AHT+PVLYE++ED+VD             YKKLD+GFLS
Sbjct:  175 VAAMVGSCCNFLTVLYIGFVGAHTMPVLYERYEDEVDGFMDSMIMKFHSHYKKLDTGFLS 234
The following BLAST results are available for this feature:
BLAST of CX676122 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RTNLH_ARATH1.477e-1461.67Reticulon-like protein B8 OS=Arabidopsis thaliana ... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_67C07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-67C07-E13-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676122 ID=CX676122; Name=CX676122; organism=Citrus sinensis; type=EST; length=404bp
TTTTTTTGAAAAAGGGATTAGTAGTTATTTGGACTCTTATAAATTCACCA
GGTCAATATTCTATAATAATACATAATTCCACCATAATTAACATCAATAA
TATGACAATGTTGTCGTTACGTTCCATCACTAGTCATGGCAAGGGGGATA
TGTAAAATCTAATGTTTGATCAATCGATCTATTCGCTTTTCTTCCCTTTG
AACTTGCCCTTGGGGATTTTGCTGAGGAAACCTGAATCAAGCTTCTTGTA
CTGATTCTGGAGCTGCTGGAAGACATTGTTCAGAAAGCTGTCAACTTTAT
CTTCATGCTTCTCATACAGGACTGGTAATGTATGGGCAGCAACAAAACCA
ATATATAGAACGGTCAAAAGGTTACACCAGCTCCCTATCACAGCAGCAAC
CCCT
back to top