FC921857

Overview
NameFC921857
Unique NameFC921857
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length253
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13541 contig Csv1_Contig13541:1..253. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC921857 vs. ExPASy Swiss-Prot
Match: GH31_ARATH (Probable indole-3-acetic acid-amido synthetase GH3.1 OS=Arabidopsis thaliana GN=GH3.1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.482e-16
Identity = 40/51 (78.43%), Postives = 45/51 (88.24%), Query Frame = 3 
Query:   99 MAIDSALPSPLGTPVCEKDAKALRFIEEMTRNADSVQERVLAEILSRNGET 251
            MA+DS L SPLG P CEKDAKALRFIEEMTRNAD+VQE +LAEIL+RN +T
Sbjct:    1 MAVDSNLSSPLGPPACEKDAKALRFIEEMTRNADTVQENLLAEILARNADT 51
The following BLAST results are available for this feature:
BLAST of FC921857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
GH31_ARATH4.482e-1678.43Probable indole-3-acetic acid-amido synthetase GH3... [more]
back to top
Properties
Property NameValue
Genbank descriptionC06053B12T7 RindPdigS Citrus sinensis cDNA clone C06053B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921857 ID=FC921857; Name=FC921857; organism=Citrus sinensis; type=EST; length=253bp
CGCGGGGACCGCACCATCAATTGAATTTTCTTCTTGAGCCAGCTTTTAGT
TAAAAACAATCAAATTTAATTTCTCAACTAATCTTTAATTTCTGAATCAT
GGCCATTGATTCAGCTCTCCCATCCCCACTTGGGACACCTGTTTGTGAGA
AAGATGCAAAAGCGCTTCGTTTCATTGAAGAAATGACAAGAAATGCTGAC
TCGGTTCAAGAGAGGGTTTTGGCTGAGATACTCAGCCGAAACGGTGAGAC
TGA
back to top