CX676101

Overview
NameCX676101
Unique NameCX676101
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length907
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676101 vs. ExPASy Swiss-Prot
Match: ILR3_ARATH (Transcription factor ILR3 OS=Arabidopsis thaliana GN=ILR3 PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 1.119e-46
Identity = 112/224 (50.00%), Postives = 133/224 (59.38%), Query Frame = 1
Query:  244 MSSPYNSNWIFDCGLLD-DIGVSGGDLPSLDPPEVLWSSSTSNPPLSAEFNDSFGNLDAFKETGSRKRVXXXXXXXXXXXXXXEKMRRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKALSS--QXXXXXXXXXXXXXXXXXGQVVGGKLVPLVGYPGSSMWQFMPPAA 906
            M SP N+NWI  C L+D D G      P    P       +SN   SA  + S GN +A KE GS+KR               EK RRDRLND+FMEL +IL+PG PPK DK  +L DAV+MVTQLR EAQKLK SN  L  KI ELK EKNELRDEKQRLK EKE LE+Q+KA+++                    GQ  G K+VP++ YPG +MWQFMPPA+
Sbjct:    1 MVSPENANWI--CDLIDADYGSFTIQGPGFSWPVQQPIGVSSNS--SAGVDGSAGNSEASKEPGSKKRGRCESSSATSSKACREKQRRDRLNDKFMELGAILEPGNPPKTDKAAILVDAVRMVTQLRGEAQKLKDSNSSLQDKIKELKTEKNELRDEKQRLKTEKEKLEQQLKAMNAPQPSFFPAPPMMPTAFASAQGQAPGNKMVPIISYPGVAMWQFMPPAS 220          
BLAST of CX676101 vs. ExPASy Swiss-Prot
Match: BH115_ARATH (Transcription factor bHLH115 OS=Arabidopsis thaliana GN=BHLH115 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.849e-41
Identity = 100/221 (45.25%), Postives = 127/221 (57.47%), Query Frame = 1
Query:  244 MSSPYNSNWIFDCGLLDDIGVSGGDLPSLDPPEVLWSSSTSNPPLSAEFNDSFGNLDAFKETGSRKRVXXXXXXXXXXXXXXEKMRRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKALSSQXXXXXXXXXXXXXXXXXGQVVGGKLVPLVGYPGSSMWQFMPPAA 906
            M SP N+NW+ D  L++  G      P+   P  +  S+T    +S E +    + D  KE  SRKR+              EK RRDRLND+F EL+S+L+PGR PK DK  ++ DA++MV Q RDEAQKLK  N  L  KI ELK EKNELRDEKQ+LK EKE +++Q+KA+ +Q                  Q  G KLVP   YPG +MWQFMPPAA
Sbjct:    1 MVSPENTNWLSDYPLIE--GAFSDQNPTF--PWQIDGSAT----VSVEVDGFLCDADVIKEPSSRKRIKTESCTGSNSKACREKQRRDRLNDKFTELSSVLEPGRTPKTDKVAIINDAIRMVNQARDEAQKLKDLNSSLQEKIKELKDEKNELRDEKQKLKVEKERIDQQLKAIKTQ-PQPQPCFLPNPQTLSQAQAPGSKLVPFTTYPGFAMWQFMPPAA 212          
BLAST of CX676101 vs. ExPASy Swiss-Prot
Match: BH034_ARATH (Transcription factor bHLH34 OS=Arabidopsis thaliana GN=BHLH34 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.504e-24
Identity = 56/118 (47.46%), Postives = 83/118 (70.34%), Query Frame = 1
Query:  412 DAFKETGSRKRVXXXXXXXXXXXXXXEKMRRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKAL 765
            + F+E  S KR               EK+RR++LND+FM+L+S+L+PGR PK DK+ +L DA+++V QLR EA +L+ +N+KLL +I  LK +KNELR+EK  LK EKE +E+Q+K++
Sbjct:  145 EEFEEECSGKRRRTGSCSKPGTKACREKLRREKLNDKFMDLSSVLEPGRTPKTDKSAILDDAIRVVNQLRGEAHELQETNQKLLEEIKSLKADKNELREEKLVLKAEKEKMEQQLKSM 262          
BLAST of CX676101 vs. ExPASy Swiss-Prot
Match: BH104_ARATH (Transcription factor bHLH104 OS=Arabidopsis thaliana GN=BHLH104 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.332e-23
Identity = 51/94 (54.26%), Postives = 77/94 (81.91%), Query Frame = 1
Query:  490 EKMRRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKALSS 771
            E++RR++LN+RFM+L+S+L+PGR PK DK  +L DA++++ QLRDEA KL+ +N+KLL +I  LK EKNELR+EK  LK +KE  E+Q+K++++
Sbjct:  139 ERLRREKLNERFMDLSSVLEPGRTPKTDKPAILDDAIRILNQLRDEALKLEETNQKLLEEIKSLKAEKNELREEKLVLKADKEKTEQQLKSMTA 232          
BLAST of CX676101 vs. ExPASy Swiss-Prot
Match: BH121_ARATH (Transcription factor bHLH121 OS=Arabidopsis thaliana GN=BHLH121 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.130e-14
Identity = 42/88 (47.73%), Postives = 58/88 (65.91%), Query Frame = 1
Query:  490 EKMRRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQ 753
            EK+RR++LN+ F+EL ++LDP RP K DK  +L D VQ++ +L  E  KLK     L  +  EL  EKN+LR+EK  LK++ ENL  Q
Sbjct:   67 EKLRREKLNEHFVELGNVLDPERP-KNDKATILTDTVQLLKELTSEVNKLKSEYTALTDESRELTQEKNDLREEKTSLKSDIENLNLQ 153          
BLAST of CX676101 vs. ExPASy Swiss-Prot
Match: BH011_ARATH (Transcription factor bHLH11 OS=Arabidopsis thaliana GN=BHLH11 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.381e-12
Identity = 39/88 (44.32%), Postives = 57/88 (64.77%), Query Frame = 1
Query:  490 EKMRRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQ 753
            EK+RRD+L ++F+EL + LDP RP K DK  +L D +QM+  + ++  +LK   E L  +  EL  EK+ELR+EK  LK++ E L  Q
Sbjct:   53 EKLRRDKLKEQFLELGNALDPNRP-KSDKASVLTDTIQMLKDVMNQVDRLKAEYETLSQESRELIQEKSELREEKATLKSDIEILNAQ 139          
The following BLAST results are available for this feature:
BLAST of CX676101 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ILR3_ARATH1.119e-4650.00Transcription factor ILR3 OS=Arabidopsis thaliana ... [more]
BH115_ARATH1.849e-4145.25Transcription factor bHLH115 OS=Arabidopsis thalia... [more]
BH034_ARATH3.504e-2447.46Transcription factor bHLH34 OS=Arabidopsis thalian... [more]
BH104_ARATH1.332e-2354.26Transcription factor bHLH104 OS=Arabidopsis thalia... [more]
BH121_ARATH1.130e-1447.73Transcription factor bHLH121 OS=Arabidopsis thalia... [more]
BH011_ARATH1.381e-1244.32Transcription factor bHLH11 OS=Arabidopsis thalian... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_67B03_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-67B03-C5-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676101 ID=CX676101; Name=CX676101; organism=Citrus sinensis; type=EST; length=907bp
CTTTCTTTTCTTGTGGTGGTGGTGGAAGATCATGTGGGGTGTGTCTCCCT
CTCAGAAAATCCTTTTTATTCCACTTTCTCATTATTCTTCTATATCTTTT
TTGCCATCAAACGAACCAACCCAGTTCACTCGTTCCACTTTTATGATCTT
TTTCATTCCTAAGGCACGCCGTTTGACTCGTAACATCATCATCACATTGC
CATTGCCAGTGAGACTCAGCCGCATTATAACGGAGCAGGAGATATGTCAT
CACCCTATAATTCCAACTGGATATTCGATTGTGGTTTGTTAGATGACATT
GGAGTCTCTGGTGGCGACCTCCCCTCCCTTGATCCTCCGGAGGTTCTTTG
GTCTTCTTCCACCTCAAATCCTCCTCTCAGTGCGGAATTCAATGATTCCT
TTGGCAATTTGGATGCTTTCAAGGAAACTGGCTCCAGGAAAAGGGTGAGA
TCTGGATCCTGCAGTGCATCTGGTTCTAAAGCTTGTAGAGAGAAAATGCG
AAGAGATAGGCTGAATGACAGGTTCATGGAATTGGCTTCTATTCTGGATC
CTGGGAGGCCTCCTAAAATGGACAAGACAGTTTTATTGGCTGATGCTGTT
CAGATGGTGACTCAACTGCGTGATGAAGCTCAAAAACTTAAGGTGTCAAA
TGAAAAGCTGTTGGGGAAGATCAATGAATTAAAGTGTGAGAAGAATGAGC
TTCGTGACGAGAAACAGAGGCTAAAAAATGAGAAGGAAAATCTTGAGAGG
CAAGTAAAAGCCTTGAGTTCTCAGCCTGCCTTCTTACCTCATCCTCCTCC
AGTCCCGGCTCCATTTTCTGCACCAGGTCAAGTTGTTGGTGGCAAATTGG
TGCCCTTAGTTGGCTATCCTGGNAGTTCCATGTGGCAGTTCATGCCACCT
GCTGCTG
back to top