CX676100

Overview
NameCX676100
Unique NameCX676100
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length905
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676100 vs. ExPASy Swiss-Prot
Match: ILR3_ARATH (Transcription factor ILR3 OS=Arabidopsis thaliana GN=ILR3 PE=1 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 6.095e-53
Identity = 112/192 (58.33%), Postives = 130/192 (67.71%), Query Frame = -2
Query:  233 SAEFNDSFGNLDAFKETGSRKRVXXXXXXXXXXXXXREKMRRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKALSS--QXXXXXXXXXXXXXXXXPGQVVGGKLVPLVGYPGVSMWQFMPPAAVDTSQDHVLRPPVA 802
            SA  + S GN +A KE GS+KR              REK RRDRLND+FMEL +IL+PG PPK DK  +L DAV+MVTQLR EAQKLK SN  L  KI ELK EKNELRDEKQRLK EKE LE+Q+KA+++                    GQ  G K+VP++ YPGV+MWQFMPPA+VDTSQDHVLRPPVA
Sbjct:   43 SAGVDGSAGNSEASKEPGSKKRGRCESSSATSSKACREKQRRDRLNDKFMELGAILEPGNPPKTDKAAILVDAVRMVTQLRGEAQKLKDSNSSLQDKIKELKTEKNELRDEKQRLKTEKEKLEQQLKAMNAPQPSFFPAPPMMPTAFASAQGQAPGNKMVPIISYPGVAMWQFMPPASVDTSQDHVLRPPVA 234          
BLAST of CX676100 vs. ExPASy Swiss-Prot
Match: BH115_ARATH (Transcription factor bHLH115 OS=Arabidopsis thaliana GN=BHLH115 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.243e-47
Identity = 102/191 (53.40%), Postives = 122/191 (63.87%), Query Frame = -2
Query:  233 LSAEFNDSFGNLDAFKETGSRKRVXXXXXXXXXXXXXREKMRRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKALSSQXXXXXXXXXXXXXXXXPGQVVGGKLVPLVGYPGVSMWQFMPPAAVDTSQDHVLRPPVA 805
            +S E +    + D  KE  SRKR+             REK RRDRLND+F EL+S+L+PGR PK DK  ++ DA++MV Q RDEAQKLK  N  L  KI ELK EKNELRDEKQ+LK EKE +++Q+KA+ +Q                  Q  G KLVP   YPG +MWQFMPPAAVDTSQDHVLRPPVA
Sbjct:   37 VSVEVDGFLCDADVIKEPSSRKRIKTESCTGSNSKACREKQRRDRLNDKFTELSSVLEPGRTPKTDKVAIINDAIRMVNQARDEAQKLKDLNSSLQEKIKELKDEKNELRDEKQKLKVEKERIDQQLKAIKTQ-PQPQPCFLPNPQTLSQAQAPGSKLVPFTTYPGFAMWQFMPPAAVDTSQDHVLRPPVA 226          
BLAST of CX676100 vs. ExPASy Swiss-Prot
Match: BH104_ARATH (Transcription factor bHLH104 OS=Arabidopsis thaliana GN=BHLH104 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 8.016e-29
Identity = 66/153 (43.14%), Postives = 97/153 (63.40%), Query Frame = -2
Query:  233 EKMRRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKALSSQXXXXXXXXXXXXXXXXPGQVVGGKLVPLVGYPGVSMWQFMPPAAVDTSQDHVLRPPVA 691
            E++RR++LN+RFM+L+S+L+PGR PK DK  +L DA++++ QLRDEA KL+ +N+KLL +I  LK EKNELR+EK  LK +KE  E+Q+K++++                        K+     Y  + MW +MP +  DTS+D  LRPP A
Sbjct:  139 ERLRREKLNERFMDLSSVLEPGRTPKTDKPAILDDAIRILNQLRDEALKLEETNQKLLEEIKSLKAEKNELREEKLVLKADKEKTEQQLKSMTAPSSGFIPHIPAAFNH--------NKMAVYPSYGYMPMWHYMPQSVRDTSRDQELRPPAA 283          
BLAST of CX676100 vs. ExPASy Swiss-Prot
Match: BH034_ARATH (Transcription factor bHLH34 OS=Arabidopsis thaliana GN=BHLH34 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.399e-27
Identity = 74/180 (41.11%), Postives = 104/180 (57.78%), Query Frame = -2
Query:  233 DAFKETGSRKRVXXXXXXXXXXXXXREKMRRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQVKALSSQXXXXXXXXXXXXXXXXPGQVVGGKLVPLVGY-PGVSMWQFMPPAAVDTSQDHVLRPPVA 769
            + F+E  S KR              REK+RR++LND+FM+L+S+L+PGR PK DK+ +L DA+++V QLR EA +L+ +N+KLL +I  LK +KNELR+EK  LK EKE +E+Q+K++                      V      P   Y P + MW  +PPA  DTS+D    PPVA
Sbjct:  145 EEFEEECSGKRRRTGSCSKPGTKACREKLRREKLNDKFMDLSSVLEPGRTPKTDKSAILDDAIRVVNQLRGEAHELQETNQKLLEEIKSLKADKNELREEKLVLKAEKEKMEQQLKSMVVPSPGFMPSQHPAAFHSHKMAVA----YPYGYYPPNMPMWSPLPPADRDTSRDLKNLPPVA 320          
BLAST of CX676100 vs. ExPASy Swiss-Prot
Match: BH121_ARATH (Transcription factor bHLH121 OS=Arabidopsis thaliana GN=BHLH121 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.124e-14
Identity = 42/88 (47.73%), Postives = 58/88 (65.91%), Query Frame = -2
Query:  428 EKMRRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQ 691
            EK+RR++LN+ F+EL ++LDP RP K DK  +L D VQ++ +L  E  KLK     L  +  EL  EKN+LR+EK  LK++ ENL  Q
Sbjct:   67 EKLRREKLNEHFVELGNVLDPERP-KNDKATILTDTVQLLKELTSEVNKLKSEYTALTDESRELTQEKNDLREEKTSLKSDIENLNLQ 153          
BLAST of CX676100 vs. ExPASy Swiss-Prot
Match: BH011_ARATH (Transcription factor bHLH11 OS=Arabidopsis thaliana GN=BHLH11 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.374e-12
Identity = 39/88 (44.32%), Postives = 57/88 (64.77%), Query Frame = -2
Query:  428 EKMRRDRLNDRFMELASILDPGRPPKMDKTVLLADAVQMVTQLRDEAQKLKVSNEKLLGKINELKCEKNELRDEKQRLKNEKENLERQ 691
            EK+RRD+L ++F+EL + LDP RP K DK  +L D +QM+  + ++  +LK   E L  +  EL  EK+ELR+EK  LK++ E L  Q
Sbjct:   53 EKLRRDKLKEQFLELGNALDPNRP-KSDKASVLTDTIQMLKDVMNQVDRLKAEYETLSQESRELIQEKSELREEKATLKSDIEILNAQ 139          
The following BLAST results are available for this feature:
BLAST of CX676100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ILR3_ARATH6.095e-5358.33Transcription factor ILR3 OS=Arabidopsis thaliana ... [more]
BH115_ARATH2.243e-4753.40Transcription factor bHLH115 OS=Arabidopsis thalia... [more]
BH104_ARATH8.016e-2943.14Transcription factor bHLH104 OS=Arabidopsis thalia... [more]
BH034_ARATH4.399e-2741.11Transcription factor bHLH34 OS=Arabidopsis thalian... [more]
BH121_ARATH1.124e-1447.73Transcription factor bHLH121 OS=Arabidopsis thalia... [more]
BH011_ARATH1.374e-1244.32Transcription factor bHLH11 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_67B03_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-67B03-C5-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676100 ID=CX676100; Name=CX676100; organism=Citrus sinensis; type=EST; length=905bp
TTTTTTTTTTTTTTTTTGGTACTAACAAGATTTGTTTGATGGGAATTACA
TGTTATCCGAACATTCAATGAGTTCCAAGTTTCCCAATAAAATCAGTGTA
CTCTCATAGATCCCCAACTTAAAGCAAATAAAATTGTGAAAACAACACCG
AGATCTCTGTCAAGATTCATTATCAACAAATTAAGGCATCTAGTGATGAG
GGAAGGCAGACCTAGAAAAGCCTGCAAATTTAAGCAACTGGAGGACGGAG
AACATGATCCTGTGACGTATCGACAGCAGCAGGTGGCATGAACTGCCACA
TGGAAACTCCAGGATAGCCAACTAAGGGCACCAATTTGCCACCAACAACT
TGACCTGGTGCAGAAAATGGAGCCGGGACTGGAGGAGGATGAGGTAAGAA
GGCAGGCTGAGAACTCAAGGCTTTTACTTGCCTCTCAAGATTTTCCTTCT
CATTTTTTAGCCTCTGTTTCTCGTCACGAAGCTCATTCTTCTCACACTTT
AATTCATTGATCTTCCCCAACAGCTTTTCATTTGACACCTTAAGTTTTTG
AGCTTCATCACGCAGTTGAGTCACCATCTGAACAGCATCAGCCAATAAAA
CTGTCTTGTCCATTTTAGGAGGCCTCCCAGGATCCAGAATAGAAGCCAAT
TCCATGAACCTGTCATTCAGCCTATCTCTTCGCATTTTCTCTCTACAAGC
TTTAGAACCAGATGCACTGCAGGATCCAGATCTCACCCTTTTCCTGGAGC
CAGTTTCCTTGAAAGCATCCAAATTGCCAAAGGAATCATTGAATTCCGCA
CTGAGAGGAGGATTTGAGGTGGAAGAAGACCAAAGAACCTCCGGAGGATC
AAGGGAGGGGAGGTCGCCACCAGAGACTCCAATGTCATCTAACAAACCAC
AATCG
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