FC921849

Overview
NameFC921849
Unique NameFC921849
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length379
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7238 contig Csv1_Contig7238:116..494. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921849 vs. ExPASy Swiss-Prot
Match: METE_MESCR (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Mesembryanthemum crystallinum GN=METE PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 4.708e-53
Identity = 98/106 (92.45%), Postives = 102/106 (96.23%), Query Frame = -3
Query:    3 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKASADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASVPA 320
            MASHIVGYPRMGPKRELKFALESFWDGKS+AEDL+K SADLRSSIWKQM++AGIKYIPSNTFSYYDQVLDTTAMLGAVPPRY W GGEI FDVYFSMARGNASVPA
Sbjct:    1 MASHIVGYPRMGPKRELKFALESFWDGKSTAEDLKKVSADLRSSIWKQMADAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYGWTGGEIEFDVYFSMARGNASVPA 106          
BLAST of FC921849 vs. ExPASy Swiss-Prot
Match: METE_CATRO (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Catharanthus roseus GN=METE PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 2.583e-51
Identity = 96/106 (90.57%), Postives = 100/106 (94.34%), Query Frame = -3
Query:    3 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKASADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASVPA 320
            MASHIVGYPRMGPKRELKFALESFWD KSSAEDLQK +ADLRSSIWKQM++AGIKYIPSNTFSYYDQVLDT  MLGAVPPRYN+ GGEIGFD YFSMARGNASVPA
Sbjct:    1 MASHIVGYPRMGPKRELKFALESFWDKKSSAEDLQKVAADLRSSIWKQMADAGIKYIPSNTFSYYDQVLDTATMLGAVPPRYNFAGGEIGFDTYFSMARGNASVPA 106          
BLAST of FC921849 vs. ExPASy Swiss-Prot
Match: METE_ARATH (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Arabidopsis thaliana GN=CIMS PE=1 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 9.817e-51
Identity = 95/106 (89.62%), Postives = 100/106 (94.34%), Query Frame = -3
Query:    3 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKASADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASVPA 320
            MASHIVGYPRMGPKRELKFALESFWDGKS+AEDLQK SADLRSSIWKQMS AG K+IPSNTF++YDQVLDTTAMLGAVPPRY + GGEIG DVYFSMARGNASVPA
Sbjct:    1 MASHIVGYPRMGPKRELKFALESFWDGKSTAEDLQKVSADLRSSIWKQMSAAGTKFIPSNTFAHYDQVLDTTAMLGAVPPRYGYTGGEIGLDVYFSMARGNASVPA 106          
BLAST of FC921849 vs. ExPASy Swiss-Prot
Match: METE_SOLSC (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Solenostemon scutellarioides GN=MET PE=1 SV=2)

HSP 1 Score: 186.808 bits (473), Expect = 2.956e-47
Identity = 92/106 (86.79%), Postives = 95/106 (89.62%), Query Frame = -3
Query:    3 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKASADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASVPA 320
            MASHIVGYPRMGPKRELKFALESFWDGKSSAEDL+K    L   + KQMS+AGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNW GGEIGF  YFSMARGNASVPA
Sbjct:    1 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLEKCQLILGIHL-KQMSDAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWTGGEIGFSTYFSMARGNASVPA 105          
BLAST of FC921849 vs. ExPASy Swiss-Prot
Match: METE_RHILO (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Rhizobium loti GN=metE PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.941e-28
Identity = 55/96 (57.29%), Postives = 69/96 (71.88%), Query Frame = -3
Query:   18 VGYPRMGPKRELKFALESFWDGKSSAEDLQKASADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGN 305
            +G PR+G +RELKFALES+W GKS A DL   +  LR++ W++  + G+  IPSN FS YD VLDT AM+GAVP RY W  GE+  D YF+MARGN
Sbjct:    4 LGVPRIGRRRELKFALESYWSGKSPAADLLATAKALRAASWREQHDRGVSKIPSNDFSLYDHVLDTVAMVGAVPARYTWTDGEVPLDTYFAMARGN 99          
BLAST of FC921849 vs. ExPASy Swiss-Prot
Match: METE_CAUCR (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Caulobacter crescentus GN=metE PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.398e-27
Identity = 51/101 (50.50%), Postives = 71/101 (70.30%), Query Frame = -3
Query:    3 VGYPRMGPKRELKFALESFWDGKSSAEDLQKASADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASVPA 305
            +G+PR+GPKRELKFALE++W GK+ A+ L   + DLR+  W + +  G+ ++PSN FS YD VLDT  M+GA+P  Y W+GG +    YF+MARG+   PA
Sbjct:    8 LGFPRIGPKRELKFALEAYWAGKTDADALLDTARDLRAKTWTRQAALGVAHVPSNDFSLYDHVLDTAVMVGAIPAAYGWSGGTVDLATYFAMARGDQGRPA 108          
BLAST of FC921849 vs. ExPASy Swiss-Prot
Match: METE_RHOPT (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Rhodopseudomonas palustris (strain TIE-1) GN=metE PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.291e-26
Identity = 55/100 (55.00%), Postives = 70/100 (70.00%), Query Frame = -3
Query:   21 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKASADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARG 320
            +A   +G PR+GP+RELK ALESFW GKS+  DL K +A LR++ W + S  G+  IPSN FS YDQVLDT+ M+GA+P  Y W GG +    YF+MARG
Sbjct:   10 LAVATLGTPRIGPRRELKSALESFWAGKSTEADLLKVAAALRAANWARQSARGVSVIPSNDFSLYDQVLDTSVMVGAIPEIYGWRGGPVSLATYFAMARG 109          
BLAST of FC921849 vs. ExPASy Swiss-Prot
Match: METE_RHOPA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Rhodopseudomonas palustris GN=metE PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.291e-26
Identity = 55/100 (55.00%), Postives = 70/100 (70.00%), Query Frame = -3
Query:   21 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKASADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARG 320
            +A   +G PR+GP+RELK ALESFW GKS+  DL K +A LR++ W + S  G+  IPSN FS YDQVLDT+ M+GA+P  Y W GG +    YF+MARG
Sbjct:   10 LAVATLGTPRIGPRRELKSALESFWAGKSTEADLLKVAAALRAANWARQSARGVSVIPSNDFSLYDQVLDTSVMVGAIPEIYGWRGGPVSLATYFAMARG 109          
BLAST of FC921849 vs. ExPASy Swiss-Prot
Match: METE_SALRD (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Salinibacter ruber (strain DSM 13855) GN=metE PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.692e-24
Identity = 49/95 (51.58%), Postives = 66/95 (69.47%), Query Frame = -3
Query:   21 VGYPRMGPKRELKFALESFWDGKSSAEDLQKASADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARG 305
            +GYPR+G  RELK A+E +W G  + ++L+ ++  LR S W    E G+  +PSN FSYYDQVLD  AM+GAVP R+ W+G E+  D YF+MARG
Sbjct:    7 LGYPRIGAHRELKRAVEGYWKGDLTKDELRDSAQALRESHWATQQELGLDVVPSNDFSYYDQVLDACAMVGAVPERFPWDGTEVDLDTYFAMARG 101          
BLAST of FC921849 vs. ExPASy Swiss-Prot
Match: METE_ACIF5 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=metE PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.692e-24
Identity = 49/103 (47.57%), Postives = 69/103 (66.99%), Query Frame = -3
Query:    3 HIVGYPRMGPKRELKFALESFWDGKSSAEDLQKASADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASVPA 311
            H +G+PR+G KRELK ALESFW  +   ++LQ  +A LR   W+     G+  +P   FS YD +LD +  LGA+PPRY + GG++G D +F+MARG+A+ PA
Sbjct:    5 HSLGFPRIGHKRELKKALESFWSREIDEQELQSRAAQLRDRHWRIQQTCGMDLVPVGDFSLYDHMLDMSCTLGAIPPRYGFAGGQVGLDTFFAMARGSATQPA 107          
The following BLAST results are available for this feature:
BLAST of FC921849 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
METE_MESCR4.708e-5392.455-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_CATRO2.583e-5190.575-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ARATH9.817e-5189.625-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_SOLSC2.956e-4786.795-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_RHILO8.941e-2857.295-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_CAUCR3.398e-2750.505-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_RHOPT1.291e-2655.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_RHOPA1.291e-2655.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_SALRD2.692e-2451.585-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ACIF52.692e-2447.575-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Properties
Property NameValue
Genbank descriptionC06053B04T7 RindPdigS Citrus sinensis cDNA clone C06053B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921849 ID=FC921849; Name=FC921849; organism=Citrus sinensis; type=EST; length=379bp
ATAGCGGGAACAGAGGCGTTTCCTCTGGCCATGGAGAAGTAAACATCGAA
TCCAATCTCGCCGCCGTTCCAGTTATACCTAGGTGGCACGGCACCGAGCA
TTGCGGTGGTGTCGAGCACTTGGTCGTAGTAGGAGAAAGTGTTGCTGGGA
ATGTATTTGATCCCGGCCTCGGACATCTGTTTCCAGATGGAGGATCTGAG
ATCAGCGGACGCCTTTTGCAAATCCTCGGCGCTGCTCTTGCCATCCCAGA
AGGATTCCAACGCGAACTTGAGCTCCCTCTTGGGGCCCATGCGTGGGTAT
CCAACGATGTGAGATGCCATTTTACAAACAGAGAAAGAAGAGCAGAGAAA
TTGAGAGTCGAGAGGAGAAAGAGAGAAGA
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