CN189202

Overview
NameCN189202
Unique NameCN189202
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189202 vs. ExPASy Swiss-Prot
Match: CYSKP_CAPAN (Cysteine synthase, chloroplastic/chromoplastic OS=Capsicum annuum PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.096e-45
Identity = 85/148 (57.43%), Postives = 115/148 (77.70%), Query Frame = 1
Query:  274 PKDLPATNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFM 717
            P ++   NI  DV+QLIG TP+V+LN + +GC A IA K E+ +P  S+KDR   +M+ DAE K LISPGKT ++EPTSGN GI +AF+AA +GYK++LTMP+  SLERRV ++AFGA+L+LTDPAKGM G V KA+E+L +TP+A++
Sbjct:   59 PTEIEGLNIAEDVTQLIGNTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMISDAEEKGLISPGKTVLVEPTSGNTGIGLAFIAASRGYKLILTMPASMSLERRVILKAFGAELVLTDPAKGMKGAVSKAEEILNNTPDAYI 206          
BLAST of CN189202 vs. ExPASy Swiss-Prot
Match: CYSKP_SPIOL (Cysteine synthase, chloroplastic/chromoplastic OS=Spinacia oleracea GN=CYSK PE=1 SV=2)

HSP 1 Score: 182.57 bits (462), Expect = 1.869e-45
Identity = 90/168 (53.57%), Postives = 123/168 (73.21%), Query Frame = 1
Query:  214 VSSQPAPVDSSSFAQRLRDLPKDLPATNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFM 717
            VSS P    + S +      P  +   NI  DVSQLIG+TP+V+LN VS+G  A IA K E  +P  S+KDR   +M++DAE K +I+PGKTT++EPTSGN GI +AF+AA +GYK+ LTMP+  S+ERRV ++AFGA+L+LTDPAKGM G V+KA+E+L+ TP+++M
Sbjct:   44 VSSSPITCKAVSLSP-----PSTIEGLNIAEDVSQLIGKTPMVYLNNVSKGSVANIAAKLESMEPCCSVKDRIGYSMIDDAEQKGVITPGKTTLVEPTSGNTGIGLAFIAAARGYKITLTMPASMSMERRVILKAFGAELVLTDPAKGMKGAVEKAEEILKKTPDSYM 206          
BLAST of CN189202 vs. ExPASy Swiss-Prot
Match: CYSKP_SOLTU (Cysteine synthase, chloroplastic/chromoplastic OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.163e-45
Identity = 84/146 (57.53%), Postives = 115/146 (78.77%), Query Frame = 1
Query:  280 DLPATNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFM 717
            ++   NI  DV+QLIG TP+V+LN +++GC A IA K E+ +P  S+KDR   +M+ DAE K LISPGKT ++EPTSGN GI +AF+AA +GYK++LTMP+  SLERRV ++AFGA+L+LTDPAKGM G V KA+E+L +TP+A++
Sbjct:   63 EIEGLNIAEDVTQLIGNTPMVYLNTIAKGCVANIAAKLEIMEPCCSVKDRIGFSMIVDAEEKGLISPGKTVLVEPTSGNTGIGLAFIAASRGYKLILTMPASMSLERRVILKAFGAELVLTDPAKGMKGAVSKAEEILNNTPDAYI 208          
BLAST of CN189202 vs. ExPASy Swiss-Prot
Match: CYSKM_ARATH (Cysteine synthase, mitochondrial OS=Arabidopsis thaliana GN=OASC PE=1 SV=3)

HSP 1 Score: 177.563 bits (449), Expect = 6.012e-44
Identity = 81/141 (57.45%), Postives = 115/141 (81.56%), Query Frame = 1
Query:  295 NIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFM 717
            NI  +VSQLIG+TP+V+LN +++GC A IA K E+ +P  S+KDR   +M+ DAE K  ISPGK+ ++EPTSGN GI +AF+AA +GY+++LTMP+  S+ERRV ++AFGA+L+LTDPAKGM G V+KA+E+L++TP+A+M
Sbjct:  112 NIADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYM 252          
BLAST of CN189202 vs. ExPASy Swiss-Prot
Match: CYSK1_BRAJU (Cysteine synthase OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.089e-43
Identity = 79/143 (55.24%), Postives = 109/143 (76.22%), Query Frame = 1
Query:  289 ATNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFM 717
            A+ I +DV++LIG TPLV+LN V+EGC   +A K EM +P +S+KDR   +M+ DAE K LI PG++ +IEPTSGN G+ +AF AA KGYK+++TMP+  S+ERR+ + AFG +L+LTDPAKGM G + KA+E+L  TPN +M
Sbjct:    2 ASRIAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEQKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSVERRIILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYM 144          
BLAST of CN189202 vs. ExPASy Swiss-Prot
Match: CYSK_CITLA (Cysteine synthase OS=Citrullus lanatus PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.647e-43
Identity = 79/142 (55.63%), Postives = 113/142 (79.58%), Query Frame = 1
Query:  292 TNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFM 717
            + I +DV++LIG TPLV+LN+V +GC A +A K EM +P +S+KDR   +M+ DAENK LI+PG++ +IEPTSGN GI +AF+AA KGY++++ MP+  SLERR  +RAFGA+L+LTDPA+GM G V+KA+E+   TPN+++
Sbjct:    6 STIAKDVTELIGNTPLVYLNRVVDGCVARVAAKLEMMEPCSSVKDRIGYSMISDAENKGLITPGESVLIEPTSGNTGIGLAFIAAAKGYRLIICMPASMSLERRTILRAFGAELVLTDPARGMKGAVQKAEEIKAKTPNSYI 147          
BLAST of CN189202 vs. ExPASy Swiss-Prot
Match: CYSKP_ARATH (Cysteine synthase, chloroplastic/chromoplastic OS=Arabidopsis thaliana GN=OASB PE=1 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 6.647e-43
Identity = 80/141 (56.74%), Postives = 112/141 (79.43%), Query Frame = 1
Query:  295 NIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFM 717
            NI  + +QLIG+TP+V+LN V +GC A +A K E+ +P  S+KDR   +M+ DAE K LI+PGK+ ++E TSGN GI +AF+AA KGYK++LTMP+  SLERRV +RAFGA+L+LT+PAKGM G ++KA+E+L+ TPN++M
Sbjct:   74 NIADNAAQLIGKTPMVYLNNVVKGCVASVAAKLEIMEPCCSVKDRIGYSMITDAEEKGLITPGKSVLVESTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLRAFGAELVLTEPAKGMTGAIQKAEEILKKTPNSYM 214          
BLAST of CN189202 vs. ExPASy Swiss-Prot
Match: CYSK1_ARATH (Cysteine synthase OS=Arabidopsis thaliana GN=OASA1 PE=1 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 8.681e-43
Identity = 79/143 (55.24%), Postives = 108/143 (75.52%), Query Frame = 1
Query:  289 ATNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFM 717
            A+ I +DV++LIG TPLV+LN V+EGC   +A K EM +P +S+KDR   +M+ DAE K LI PG++ +IEPTSGN G+ +AF AA KGYK+++TMP+  S ERR+ + AFG +L+LTDPAKGM G + KA+E+L  TPN +M
Sbjct:    2 ASRIAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYM 144          
BLAST of CN189202 vs. ExPASy Swiss-Prot
Match: CYSK_SPIOL (Cysteine synthase OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.481e-42
Identity = 80/140 (57.14%), Postives = 112/140 (80.00%), Query Frame = 1
Query:  298 IKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFM 717
            I +DV++LIG+TPLV+LN V++GC A +A K E  +P +S+KDR   +M+ DAE   LI+PG++ +IEPTSGN GI +AF+AA KGYK+++TMP+  SLERR  +RAFGA+LILTDPAKGM G V+KA+E+ + TPN+++
Sbjct:    8 IAKDVTELIGKTPLVYLNTVADGCVARVAAKLEGMEPCSSVKDRIGFSMITDAEKSGLITPGESVLIEPTSGNTGIGLAFIAAAKGYKLIITMPASMSLERRTILRAFGAELILTDPAKGMKGAVQKAEEIRDKTPNSYI 147          
BLAST of CN189202 vs. ExPASy Swiss-Prot
Match: CYSK2_BRAJU (Cysteine synthase OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.526e-42
Identity = 78/140 (55.71%), Postives = 106/140 (75.71%), Query Frame = 1
Query:  298 IKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFM 717
            I  DV++LIG TPLV+LN V+EGC   +A K EM +P +S+KDR   +M+ DAE K LI PG++ +IEPTSGN G+ +AF AA KGYK+++TMP+  S+ERR+ + AFG +L+LTDPAKGM G + KA+E+L  TPN +M
Sbjct:    7 IANDVTELIGNTPLVYLNSVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSIERRIILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYM 146          
The following BLAST results are available for this feature:
BLAST of CN189202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CYSKP_CAPAN1.096e-4557.43Cysteine synthase, chloroplastic/chromoplastic OS=... [more]
CYSKP_SPIOL1.869e-4553.57Cysteine synthase, chloroplastic/chromoplastic OS=... [more]
CYSKP_SOLTU4.163e-4557.53Cysteine synthase, chloroplastic/chromoplastic OS=... [more]
CYSKM_ARATH6.012e-4457.45Cysteine synthase, mitochondrial OS=Arabidopsis th... [more]
CYSK1_BRAJU5.089e-4355.24Cysteine synthase OS=Brassica juncea PE=2 SV=1[more]
CYSK_CITLA6.647e-4355.63Cysteine synthase OS=Citrullus lanatus PE=2 SV=1[more]
CYSKP_ARATH6.647e-4356.74Cysteine synthase, chloroplastic/chromoplastic OS=... [more]
CYSK1_ARATH8.681e-4355.24Cysteine synthase OS=Arabidopsis thaliana GN=OASA1... [more]
CYSK_SPIOL1.481e-4257.14Cysteine synthase OS=Spinacia oleracea PE=1 SV=1[more]
CYSK2_BRAJU2.526e-4255.71Cysteine synthase OS=Brassica juncea PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001H17_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001H17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189202 ID=CN189202; Name=CN189202; organism=Citrus sinensis; type=EST; length=718bp
GAGGCATCACCACACTCAGAGCCTTAATTTGTTATCCGCTGCAAGTGCTG
GTGGAAGTGGGAGTGGTTCTTGTAAAGAGTGAATTATTATTTTTGCTCAA
ATTTAAAGTTCCTCCTCCAACCTCCATTATTATTAAAAATGGCTGCTGCT
TTGAGGAGTTTCTTGAAGAAAAGAGCCTTAACATGCAGCGAACCCATGTT
GATGAGAAGACTGGTCTCCTCACAGCCGGCGCCGGTTGATTCTTCATCTT
TTGCTCAGAGACTCAGAGATTTGCCCAAGGATCTTCCAGCTACCAACATC
AAGAGAGATGTTTCCCAGCTCATTGGAAGAACCCCGCTTGTGTTTCTTAA
CAAAGTCAGTGAAGGATGTGGAGCTTATATTGCTGTCAAGCAAGAAATGT
TCCAACCCACTGCTAGCATCAAGGACAGACCAGCAGTGGCCATGCTCGAA
GATGCAGAAAATAAAAACTTAATTTCTCCCGGAAAGACCACTATCATAGA
GCCCACGTCAGGGAACATGGGAATAAGCATGGCGTTTATGGCAGCAATGA
AAGGGTATAAGATGGTTCTAACTATGCCCTCTTATACAAGCTTGGAGAGG
AGAGTGACAATGAGAGCATTTGGAGCTGATTTAATCCTCACAGATCCAGC
CAAGGGGATGGGAGGAACTGTTAAGAAGGCTCAAGAACTTTTGGAATCCA
CACCAAATGCTTTCATGC
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