CX676025

Overview
NameCX676025
Unique NameCX676025
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX676025 vs. ExPASy Swiss-Prot
Match: UGPI6_ARATH (Uncharacterized GPI-anchored protein At1g61900 OS=Arabidopsis thaliana GN=At1g61900 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.276e-16
Identity = 40/68 (58.82%), Postives = 47/68 (69.12%), Query Frame = -1 
Query:  330 LNVFTLESGCLLPSLPSDVNYDKTSGIGFICDLNDNIEAPWPSASFVPAGSCNETSKLPARPTAKPSQ 533
            L V   ESGCLLPSLPSD  +DK +GI F CDLNDNI APWPS+S   A +C +  ++PA P A  SQ
Sbjct:  341 LQVGNQESGCLLPSLPSDAIFDKDTGISFTCDLNDNIPAPWPSSSLSSASTCKKPVRIPALPAAASSQ 408
The following BLAST results are available for this feature:
BLAST of CX676025 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
UGPI6_ARATH2.276e-1658.82Uncharacterized GPI-anchored protein At1g61900 OS=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_66E04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-66E04-J8-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676025 ID=CX676025; Name=CX676025; organism=Citrus sinensis; type=EST; length=698bp
TTTTTTTTAGCAACAAGACATTTCTATGATGTTTGATTCCTTTAATGCGA
AATTTATTACATTTAATTGCAGTGCAATCACTGAACAATGCTACCCAAAG
AATAAAAAAGTGTAGCTAGCTTTGAAACAAAATAATTAAAGTACCAAACT
CAACAAGCAATTGAGAGGATTGCTAAAACTATCTAGATGGAGGAACTATT
TCTGTTTAGGCTTGAAGAATTTACGCATACCAGGTAATCAGTACTGGTTC
AAATAAGTGCAGTGAGTACCAATGAGGAGCTAAGCAGCAAAGGGACAATC
AATTCCTTCACTTGGAAGCCTGCAGTGGCTTGTGATGGCTTAGCTGTTGG
ACGCGCTGGAAGTTTGGAAGTTTCATTGCAGGATCCAGCTGGTACGAAAG
AAGCAGAGGGCCAAGGGGCTTCAATGTTGTCATTAAGATCACAGATGAAG
CCGATTCCTGAAGTTTTATCATAGTTCACATCCGAAGGCAGGCTCGGCAA
AAGGCAACCAGATTCTAGTGTAAAGACATTCAAAAATTAGATTTCTTTTT
TTTAGAAAAAAACAAACTCCCACACTGACTTGGACCATGGATCCGCCCCG
GGTAGGCTCTAAATTGAGAGGTCAGTTGGGCATCCCAACCCCATGACCCA
AGAGACAACGAAGGGTGAAGCTTTTAAGCCACCACAAGGATCGAACTA
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