CX676024

Overview
NameCX676024
Unique NameCX676024
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676024 vs. ExPASy Swiss-Prot
Match: TIP21_ARATH (Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1 PE=1 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 7.349e-37
Identity = 81/121 (66.94%), Postives = 89/121 (73.55%), Query Frame = -1
Query:  271 AVPTHNXXXXXXXXXXXVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFXVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVXXXXXXXXXXXXXGNVFM-HSEHAPLSN 630
            AVPTH+           VMEIIITF LVYTVYATAADPKKGSLGTIAP+AIG  VGANILAAGPFSGGSMNPARSFGPAVA+G+F  +W+YWV             GNVFM  SEH PL++
Sbjct:  127 AVPTHSVAAGLGSIEGVVMEIIITFALVYTVYATAADPKKGSLGTIAPLAIGLIVGANILAAGPFSGGSMNPARSFGPAVAAGDFSGHWVYWVGPLIGGGLAGLIYGNVFMGSSEHVPLAS 247          
BLAST of CX676024 vs. ExPASy Swiss-Prot
Match: TIP_ANTMA (Probable aquaporin TIP-type OS=Antirrhinum majus GN=DIP PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.647e-36
Identity = 83/124 (66.94%), Postives = 88/124 (70.97%), Query Frame = -1
Query:  265 AVPTHNXXXXXXXXXXXVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFXVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVXXXXXXXXXXXXXGNVFMHSEHAPL--SNDY 630
            +VPTH            VMEIIITF LVYTVYATAADPKKGSLG IAPIAIGF VGANILAAGPFSGGSMNPARSFGPAVASG+F  NWIYW              G+VF+ + HAPL  S DY
Sbjct:  127 SVPTHGVAAGMDAIQGVVMEIIITFALVYTVYATAADPKKGSLGVIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGDFSQNWIYWAGPLIGGALAGFIYGDVFI-TAHAPLPTSEDY 249          
BLAST of CX676024 vs. ExPASy Swiss-Prot
Match: TIP2_TOBAC (Probable aquaporin TIP-type RB7-18C OS=Nicotiana tabacum PE=2 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 1.810e-35
Identity = 82/124 (66.13%), Postives = 86/124 (69.35%), Query Frame = -1
Query:  265 AVPTHNXXXXXXXXXXXVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFXVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVXXXXXXXXXXXXXGNVFMHSEHAPL--SNDY 630
            AVPTH            VMEIIITF LVYTVYATAADPKKGSLGTIAPIAIGF VGANILAAGPFSGGSMNPARSFGPAV +G+F  NWIYW              G+VF+   H PL  S DY
Sbjct:  127 AVPTHGVAAGLNGFQGVVMEIIITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVAGDFSQNWIYWAGPLIGGGLAGFIYGDVFIGC-HTPLPTSEDY 249          
BLAST of CX676024 vs. ExPASy Swiss-Prot
Match: TIP1_TOBAC (Probable aquaporin TIP-type RB7-5A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.810e-35
Identity = 82/124 (66.13%), Postives = 86/124 (69.35%), Query Frame = -1
Query:  265 AVPTHNXXXXXXXXXXXVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFXVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVXXXXXXXXXXXXXGNVFMHSEHAPL--SNDY 630
            AVPTH            VMEIIITF LVYTVYATAADPKKGSLGTIAPIAIGF VGANILAAGPFSGGSMNPARSFGPAV +G+F  NWIYW              G+VF+   H PL  S DY
Sbjct:  127 AVPTHGVAAGLNGLQGVVMEIIITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVAGDFSQNWIYWAGPLIGGGLAGFIYGDVFIGC-HTPLPTSEDY 249          
BLAST of CX676024 vs. ExPASy Swiss-Prot
Match: TIP21_ORYSJ (Probable aquaporin TIP2-1 OS=Oryza sativa subsp. japonica GN=TIP2-1 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.088e-35
Identity = 78/122 (63.93%), Postives = 84/122 (68.85%), Query Frame = -1
Query:  265 AVPTHNXXXXXXXXXXXVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFXVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVXXXXXXXXXXXXXGNVFMHSEHAPLSNDY 630
            A+PTH             MEI+ITF LVYTVYATAADPKKGSLGTIAPIAIGF VGANILAAGPFSGGSMNPARSFGPAVA+GNF  NW+YWV             G+VF+ S       DY
Sbjct:  127 AIPTHGVAGISELEGVV-MEIVITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVAAGNFAGNWVYWVGPLIGGGLAGLVYGDVFIGSYQPVADQDY 247          
BLAST of CX676024 vs. ExPASy Swiss-Prot
Match: TIP22_ORYSJ (Probable aquaporin TIP2-2 OS=Oryza sativa subsp. japonica GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.267e-35
Identity = 76/120 (63.33%), Postives = 85/120 (70.83%), Query Frame = -1
Query:  271 AVPTHNXXXXXXXXXXXVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFXVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVXXXXXXXXXXXXXGNVFMHSEHAPLSN 630
            A PTH             MEII+TFGLVYTVYATAADPKKGSLGTIAPIAIGF VGANIL AGPFSGGSMNPARSFGPAVASG++ + WIYWV               V+M  +HAP+++
Sbjct:  127 ATPTHGLSGVGAFEGVV-MEIIVTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILVAGPFSGGSMNPARSFGPAVASGDYTNIWIYWVGPLVGGGLAGLVYRYVYMCGDHAPVAS 245          
BLAST of CX676024 vs. ExPASy Swiss-Prot
Match: TIP22_ARATH (Probable aquaporin TIP2-2 OS=Arabidopsis thaliana GN=TIP2-2 PE=1 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 2.614e-34
Identity = 78/123 (63.41%), Postives = 85/123 (69.11%), Query Frame = -1
Query:  265 AVPTHNXXXXXXXXXXXVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFXVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVXXXXXXXXXXXXXGNVFMHS-EHAPLSNDY 630
            +VPTH            VMEI++TF LVYTVYATAADPKKGSLGTIAPIAIGF VGANILAAGPFSGGSMNPARSFGPAV SG+F   WIYWV             G+VF+ S   AP +  Y
Sbjct:  127 SVPTHGVAAGLGAIEGVVMEIVVTFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFSQIWIYWVGPLVGGALAGLIYGDVFIGSYAPAPTTESY 249          
BLAST of CX676024 vs. ExPASy Swiss-Prot
Match: TIP23_MAIZE (Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 4.459e-34
Identity = 71/93 (76.34%), Postives = 76/93 (81.72%), Query Frame = -1
Query:  352 AVPTHNXXXXXXXXXXXVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFXVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWV 630
            A+PTH             MEI+ITF LVYTVYATAADPKKGSLGTIAP+AIGF VGANILAAGPFSGGSMNPARSFGPAVA+GNF  NW+YWV
Sbjct:  127 AIPTHGVSGISEIEGVV-MEIVITFALVYTVYATAADPKKGSLGTIAPMAIGFIVGANILAAGPFSGGSMNPARSFGPAVAAGNFAGNWVYWV 218          
BLAST of CX676024 vs. ExPASy Swiss-Prot
Match: TIP22_MAIZE (Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.605e-34
Identity = 70/93 (75.27%), Postives = 75/93 (80.65%), Query Frame = -1
Query:  352 AVPTHNXXXXXXXXXXXVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFXVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWV 630
            A+PTH            V EI+ITF LVYTVYATAADPKKGSLGTIAPIAIGF VGANILAAGPFSGGSMNPARSFGPAVA+ +F  NW+YWV
Sbjct:  127 AIPTHGVSGGTTELEGVVFEIVITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVAAADFAGNWVYWV 219          
BLAST of CX676024 vs. ExPASy Swiss-Prot
Match: TIP23_ARATH (Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.694e-33
Identity = 75/116 (64.66%), Postives = 81/116 (69.83%), Query Frame = -1
Query:  283 AVPTHNXXXXXXXXXXXVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFXVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVXXXXXXXXXXXXXGNVFMHSEHA 630
            +VPTH            VMEI++TF LVYTVYATAADPKKGSLGTIAPIAIGF VGANILAAGPFSGGSMNPARSFGPAV SG+    WIYWV             G+VF+ S  A
Sbjct:  127 SVPTHGVSAGLGAVEGVVMEIVVTFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDLSQIWIYWVGPLVGGALAGLIYGDVFIGSYEA 242          
The following BLAST results are available for this feature:
BLAST of CX676024 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
TIP21_ARATH7.349e-3766.94Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1... [more]
TIP_ANTMA3.647e-3666.94Probable aquaporin TIP-type OS=Antirrhinum majus G... [more]
TIP2_TOBAC1.810e-3566.13Probable aquaporin TIP-type RB7-18C OS=Nicotiana t... [more]
TIP1_TOBAC1.810e-3566.13Probable aquaporin TIP-type RB7-5A OS=Nicotiana ta... [more]
TIP21_ORYSJ3.088e-3563.93Probable aquaporin TIP2-1 OS=Oryza sativa subsp. j... [more]
TIP22_ORYSJ5.267e-3563.33Probable aquaporin TIP2-2 OS=Oryza sativa subsp. j... [more]
TIP22_ARATH2.614e-3463.41Probable aquaporin TIP2-2 OS=Arabidopsis thaliana ... [more]
TIP23_MAIZE4.459e-3476.34Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2[more]
TIP22_MAIZE7.605e-3475.27Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1[more]
TIP23_ARATH1.694e-3364.66Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_66E03_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-66E03-J6-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676024 ID=CX676024; Name=CX676024; organism=Citrus sinensis; type=EST; length=630bp
TTTTTAAAGACTAAAGAGTGTCATTCAAGCATGTCTCCCAATCCATCCAT
TATCGTCAGAAAAGCCGCAATGGACCACCACAACAAAGACTTTTTACAAC
CTCCAAAAGAAATGATTTAAAAAGAAGGATACCAAGAAACTAAAGAAGAA
AAGAAGAAAGAGCCAAAGCTGCTTTTCCTTCTTTTATTACAAAAAAGAAA
GAGCCAAAAGCAGGTGATCAAATGATTTAACTAAACTTTTAAACAAAGTT
TAACTAATTAATTAATAGTCATTAGATAGGGGTGCATGTTCAGAGTGCAT
GAACACATTGCCATAGATGAGCCCGGCAAGGCCACCGCCAATGAGAGGGC
CAACCCAGTAGATCCAGTTGTCCTGAAAGTTGCCGCTGGCAACGGCAGGC
CCGAAGGAACGGGCCGGGTTCATGGAACCACCGGAGAATGGGCCGGCGGC
CAGGATGTTGGCACCGACNATGAAACCGATGGCAATGGGTGCAATGGTGC
CCAATGATCCCTTCTTGGGGTCAGCTGCCGTGGCATAGACCGTGTAGACC
AAACCAAATGTGATGATGATCTCCATCACAACTCCGTCAATGGCTCCAAC
TCCAGCAACAACATTGTGGGTAGGAACTGC
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