CX676022

Overview
NameCX676022
Unique NameCX676022
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676022 vs. ExPASy Swiss-Prot
Match: RGA3_SOLBU (Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2)

HSP 1 Score: 214.157 bits (544), Expect = 6.028e-55
Identity = 111/243 (45.68%), Postives = 155/243 (63.79%), Query Frame = 2
Query:    5 FDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKETVARIMGSTHVISVNVLSEMECWSVFQSLAISGKTIGKRENLEKIGREIVKKCKGLPLAAKTIASLLRSKNTEKEWQNILENEIWELEAIEKGLLAPLLLSYNELPSKVKRCFSYCAVFPKDYGIRKHKLIELWMAQGYLSEKGAKEMEDIGEEYFNILASRSF 733
            FDE R+ +AI+ES+   S  D+ +   L + ++E + GK++ LVLDDVWNED  KW+     LK     + ILITTR E +  IMG+  +  ++ LS+ +CW +F+  A   +T    + +E IG+EIVKKC G+PLAAKT+  LLR K  E EW+++ ++EIW L   E  +L  L LSY+ LP  +++CF+YCAVFPKD  I K  LI LWMA  +L  KG  E+ED+G E +N L  RSF
Sbjct:  217 FDEKRLIKAIVESIEGKSLGDM-DLAPLQKKLQELLNGKRYFLVLDDVWNEDQEKWDNLRAVLKIGASGASILITTRLEKIGSIMGTLQLYQLSNLSQEDCWLLFKQRAFCHQTETSPKLME-IGKEIVKKCGGVPLAAKTLGGLLRFKREESEWEHVRDSEIWNLPQDENSVLPALRLSYHHLPLDLRQCFAYCAVFPKDTKIEKEYLIALWMAHSFLLSKGNMELEDVGNEVWNELYLRSF 457          
BLAST of CX676022 vs. ExPASy Swiss-Prot
Match: RGA1_SOLBU (Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2)

HSP 1 Score: 204.527 bits (519), Expect = 4.776e-52
Identity = 107/243 (44.03%), Postives = 148/243 (60.91%), Query Frame = 2
Query:    5 FDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKETVARIMGSTHVISVNVLSEMECWSVFQSLAISGKTIGKRENLEKIGREIVKKCKGLPLAAKTIASLLRSKNTEKEWQNILENEIWELEAIEKGLLAPLLLSYNELPSKVKRCFSYCAVFPKDYGIRKHKLIELWMAQGYLSEKGAKEMEDIGEEYFNILASRSF 733
            F+E R+ +AI+ES+   S  D+ +   L + ++E + GK++ LVLDDVWNED +KW      LK     + +L TTR E V  IMG+     ++ LS  +CW +F   A  G       NL  IG+EIVKKC G+PLAAKT+  +LR K  E+EW+++ ++ IW L   E  +L  L LSY+ LP  +++CF YCAVFPKD  + K  LI  WMA G+L  KG  E+ED+G E +N L  RSF
Sbjct:  217 FNEKRLIKAIVESIEGKSLSDM-DLAPLQKKLQELLNGKRYFLVLDDVWNEDQHKWANLRAVLKVGASGAFVLTTTRLEKVGSIMGTLQPYELSNLSPEDCWFLFMQRAF-GHQEEINPNLMAIGKEIVKKCGGVPLAAKTLGGILRFKREEREWEHVRDSPIWNLPQDESSILPALRLSYHHLPLDLRQCFVYCAVFPKDTKMAKENLIAFWMAHGFLLSKGNLELEDVGNEVWNELYLRSF 457          
BLAST of CX676022 vs. ExPASy Swiss-Prot
Match: RGA2_SOLBU (Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 8.146e-52
Identity = 106/243 (43.62%), Postives = 148/243 (60.91%), Query Frame = 2
Query:    5 FDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKETVARIMGSTHVISVNVLSEMECWSVFQSLAISGKTIGKRENLEKIGREIVKKCKGLPLAAKTIASLLRSKNTEKEWQNILENEIWELEAIEKGLLAPLLLSYNELPSKVKRCFSYCAVFPKDYGIRKHKLIELWMAQGYLSEKGAKEMEDIGEEYFNILASRSF 733
            FDE R+ +AI+ES+        ++   L + ++E + GK++LLVLDDVWNED  KW      LK     + +L TTR E V  IMG+     ++ LS+ +CW +F   A  G       NL  IG+EIVKK  G+PLAAKT+  +L  K  E+ W+++ ++ IW L   E  +L  L LSY++LP  +K+CF+YCAVFPKD  + K KLI LWMA G+L  KG  E+ED+G+E +  L  RSF
Sbjct:  217 FDEKRLIKAIVESIEGRPLLGEMDLAPLQKKLQELLNGKRYLLVLDDVWNEDQQKWANLRAVLKVGASGASVLTTTRLEKVGSIMGTLQPYELSNLSQEDCWLLFMQRAF-GHQEEINPNLVAIGKEIVKKSGGVPLAAKTLGGILCFKREERAWEHVRDSPIWNLPQDESSILPALRLSYHQLPLDLKQCFAYCAVFPKDAKMEKEKLISLWMAHGFLLSKGNMELEDVGDEVWKELYLRSF 458          
BLAST of CX676022 vs. ExPASy Swiss-Prot
Match: RGA4_SOLBU (Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.423e-50
Identity = 111/245 (45.31%), Postives = 146/245 (59.59%), Query Frame = 2
Query:    5 FDEFRIARAIIESLTPGS--AKDLVEFQSLMQHIEECVAGKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKETVARIMGSTHVISVNVLSEMECWSVFQSLAISGKTIGKRENLEKIGREIVKKCKGLPLAAKTIASLLRSKNTEKEWQNILENEIWELEAIEKGLLAPLLLSYNELPSKVKRCFSYCAVFPKDYGIRKHKLIELWMAQGYLSEKGAKEMEDIGEEYFNILASRSF 733
            FDE R+ + II ++   S   +DL  FQ  +Q   E + GK++LLVLDDVWN+D  KW      L      + IL TTR E V  IMG+     ++ LS  +   +F   A  G+      NL  IG+EIVKKC G+PLAAKT+  LLR K  E EW+++ +NEIW L   E  +L  L LSY+ LP  +++CF+YCAVFPKD  + K  LI LWMA G+L  KG  E+ED+G E +N L  RSF
Sbjct:  219 FDEKRLIKTIIGNIERSSPHVEDLASFQKKLQ---ELLNGKRYLLVLDDVWNDDLEKWAKLRAVLTVGARGASILATTRLEKVGSIMGTLQPYHLSNLSPHDSLLLFMQRAF-GQQKEANPNLVAIGKEIVKKCGGVPLAAKTLGGLLRFKREESEWEHVRDNEIWSLPQDESSILPALRLSYHHLPLDLRQCFAYCAVFPKDTKMIKENLITLWMAHGFLLSKGNLELEDVGNEVWNELYLRSF 459          
BLAST of CX676022 vs. ExPASy Swiss-Prot
Match: R13L1_ARATH (Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.296e-46
Identity = 93/245 (37.96%), Postives = 148/245 (60.41%), Query Frame = 2
Query:    5 FDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGK--KFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKETVARIMGSTHVISVNVLSEMECWSVFQSLAISGKTIGKRENLEKIGREIVKKCKGLPLAAKTIASLLRSKNTEKEWQNILENEIWELEAIEKGLLAPLLLSYNELPSKVKRCFSYCAVFPKDYGIRKHKLIELWMAQGYLSE-KGAKEMEDIGEEYFNILASRS 730
            FD F+I + + ES+T     +  +   L   ++E + G    FLLVLDD+WNE++  W+   +   ++   S+IL+TTR + VA IM + HV ++  LS+ +CWS+F       +       +  +   IV KC+GLPLA KT+  +LR +    EW+ +L + IW+L A +  LL  L +SY  LP+ +KRCF+YC++FPK +   K K++ LWMA+G+L + + +K +E++G EYF+ L SRS
Sbjct:  238 FDVFKITKKVYESVTSRPC-EFTDLDVLQVKLKERLTGTGLPFLLVLDDLWNENFADWDLLRQPFIHAAQGSQILVTTRSQRVASIMCAVHVHNLQPLSDGDCWSLFMKTVFGNQEPCLNREIGDLAERIVHKCRGLPLAVKTLGGVLRFEGKVIEWERVLSSRIWDLPADKSNLLPVLRVSYYYLPAHLKRCFAYCSIFPKGHAFEKDKVVLLWMAEGFLQQTRSSKNLEELGNEYFSELESRS 481          
BLAST of CX676022 vs. ExPASy Swiss-Prot
Match: DRL21_ARATH (Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.904e-41
Identity = 86/245 (35.10%), Postives = 146/245 (59.59%), Query Frame = 2
Query:    5 FDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKETVARIMGSTHVISVNVLSEMECWSVFQSLAISGKTIGK-RENLEKIGREIVKKCKGLPLAAKTIASLLRSKNTEKEWQNILENEIWELEAIEKGLLAPLLLSYNELPSKVKRCFSYCAVFPKDYGIRKHKLIELWMAQGYLSE-KGAKEMEDIGEEYFNILASRSF 733
            F+ F + +A+++ +T  SA +  +  SL   +++ ++GK+FLLVLDD W+E   +WE F     ++   SKI++TTR E V+ +  +  +  + +++  ECW +    A    ++G   + LE IG+ I ++CKGLPLAA+ IAS LRSK    +W  + +N      +    +L  L LSY+ LP ++KRCF+ C++FPK +   + +L+ LWMA   L + + ++ +EDIG +Y   L ++SF
Sbjct:  235 FNVFTVTKAVLQDIT-SSAVNTEDLPSLQIQLKKTLSGKRFLLVLDDFWSESDSEWESFQVAFTDAEEGSKIVLTTRSEIVSTVAKAEKIYQMKLMTNEECWELISRFAFGNISVGSINQELEGIGKRIAEQCKGLPLAARAIASHLRSKPNPDDWYAVSKN----FSSYTNSILPVLKLSYDSLPPQLKRCFALCSIFPKGHVFDREELVLLWMAIDLLYQPRSSRRLEDIGNDYLGDLVAQSF 474          
BLAST of CX676022 vs. ExPASy Swiss-Prot
Match: RPM1_ARATH (Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.223e-31
Identity = 73/224 (32.59%), Postives = 129/224 (57.59%), Query Frame = 2
Query:   77 FQSLMQHIEECVAGKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKETVARI---MGSTHVISVNVLSEMECWSVFQSLAISGKTIGKR-ENLEKIGREIVKKCKGLPLAAKTIASLLRSKNTEKEWQNILENEIWELEAIE--KGLLAPLLLSYNELPSKVKRCFSYCAVFPKDYGIRKHKLIELWMAQGYLSEKGAKEMEDIGEEYFNILASRS 730
            ++ L++ + E +  K++++VLDDVW      W      L + ++ S++++TTR   VA     +GST    + +L E E W +F + A        R +NLE I R++V++C+GLPLA  ++ S++ +K  E EW+ +     WEL      K + + + LS+N+LP  +KRCF YC++FP +Y +++ +LI +WMAQ ++      + E++ + Y N L  R+
Sbjct:  265 YRELVEKLVEYLQSKRYIVVLDDVWTTGL--WREISIALPDGIYGSRVMMTTRDMNVASFPYGIGSTKH-EIELLKEDEAWVLFSNKAFPASLEQCRTQNLEPIARKLVERCQGLPLAIASLGSMMSTKKFESEWKKVYSTLNWELNNNHELKIVRSIMFLSFNDLPYPLKRCFLYCSLFPVNYRMKRKRLIRMWMAQRFVEPIRGVKAEEVADSYLNELVYRN 485          
BLAST of CX676022 vs. ExPASy Swiss-Prot
Match: R13L4_ARATH (Disease resistance RPP13-like protein 4 OS=Arabidopsis thaliana GN=RPP13L4 PE=2 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 3.330e-29
Identity = 81/250 (32.40%), Postives = 141/250 (56.40%), Query Frame = 2
Query:    5 FDEFRIARAIIESLTPGSAKDLVEFQSLMQHIEECVAGKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKETVARIMGS----THVISVNVLSEMECWSVFQSLAISGKT-IGKRENLEKIGREIVKKCKGLPLAAKTIASLLRSKN-TEKEWQNILENEIWELEAIEK---GLLAPLLLSYNELPSKVKRCFSYCAVFPKDYGIRKHKLIELWMAQGYLSEKGAKEMEDIGEEYFNILASR 727
            F E +I R+I+ +L   S  D  +  +L++ I++ + GK++L+V+DDVW+++   W+  Y+ L      S +++TTR E+VA+ + +    TH     +LS    W +F ++A +      +R  LE +G+EIV KCKGLPL  K +  LL  K+    EW+ I E+   EL         +++ L LSY+ELPS +K C    +++P+D  I K +L+  W+ +G++  +  +   + GE+ F+ L +R
Sbjct:  224 FTEEQIMRSILRNLGDASVGD--DIGTLLRKIQQYLLGKRYLIVMDDVWDKNLSWWDKIYQGLPRGQGGS-VIVTTRSESVAKRVQARDDKTH--RPELLSPDNSWLLFCNVAFAANDGTCERPELEDVGKEIVTKCKGLPLTIKAVGGLLLCKDHVYHEWRRIAEHFQDELRGNTSETDNVMSSLQLSYDELPSHLKSCILTLSLYPEDCVIPKQQLVHGWIGEGFVMWRNGRSATESGEDCFSGLTNR 468          
BLAST of CX676022 vs. ExPASy Swiss-Prot
Match: R13L3_ARATH (Putative disease resistance RPP13-like protein 3 OS=Arabidopsis thaliana GN=RPP13L3 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.071e-27
Identity = 82/241 (34.02%), Postives = 130/241 (53.94%), Query Frame = 2
Query:   32 IIESLTPGSAKDLV------EFQSLMQHIEECVAGKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKETVAR-IMGSTHVISVNVLSEMECWSVFQSLAISGKTIGK-RENLEKIGREIVKKCKGLPLAAKTIASLLRSKNTEKEWQNILENEIWELEAIEKGLLAPLLLSYNELPSKVKRCFSYCAVFPKDYGIRKHKLIELWMAQGYLSEKGAKEMEDIGEEYFNILASRS 730
            II SL   SA+++       E + L  ++   + GK +++V+DDVW+ D   WE   + L      SK++ITTR   +A  + G+ +   +  L+  E W++F+  A S   I K  E+L++ G+E+VKKC GLPLA   ++ LL  K T  EW  +  +    L+     +     LS+ E+  ++K CF Y +VFP+DY I+  KLI L +A+G++ E     MED+   Y + L  RS
Sbjct:  236 IIRSLGIVSAEEMEKIKMFEEDEELEVYLYGLLEGKNYMVVVDDVWDPD--AWESLKRALPCDHRGSKVIITTRIRAIAEGVEGTVYAHKLRFLTFEESWTLFERKAFSN--IEKVDEDLQRTGKEMVKKCGGLPLAIVVLSGLLSRKRTN-EWHEVCASLWRRLKDNSIHISTVFDLSFKEMRHELKLCFLYFSVFPEDYEIKVEKLIHLLVAEGFIQEDEEMMMEDVARCYIDELVDRS 471          
BLAST of CX676022 vs. ExPASy Swiss-Prot
Match: RPP13_ARATH (Disease resistance protein RPP13 OS=Arabidopsis thaliana GN=RPP13 PE=2 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.827e-27
Identity = 80/245 (32.65%), Postives = 130/245 (53.06%), Query Frame = 2
Query:   20 IARAIIESLTPGSAKDLVEFQSLMQ-----HIEECVAGKKFLLVLDDVWNEDYYKWEPFYKCLKNSLHESKILITTRKETVAR-IMGSTHVISVNVLSEMECWSVFQSLAISGKTIGKRENLEKIGREIVKKCKGLPLAAKTIASLLRSKNTEKEWQNILENEIWELEAIEKGLLAPLL--LSYNELPSKVKRCFSYCAVFPKDYGIRKHKLIELWMAQGYLSEKGAKEMEDIGEEYFNILASRS 730
            I   II SL   S ++L + +   +     ++   + GKK+L+V+DD+W  +   W+   + L  +   S+++ITTR + VA  + G  +   +  L+  E W +F+  A       K E+L K G+E+V+KC+GLPL    +A LL S+ T  EW ++  N +W     +   +AP++  LS+ EL  + K CF Y ++FP+DY I   KLI L +A+G++       MED+   Y   L  RS
Sbjct:  232 ILMRIIRSLGMTSGEELEKIRKFAEEELEVYLYGLLEGKKYLVVVDDIWERE--AWDSLKRALPCNHEGSRVIITTRIKAVAEGVDGRFYAHKLRFLTFEESWELFEQRAFRNIQ-RKDEDLLKTGKEMVQKCRGLPLCIVVLAGLL-SRKTPSEWNDVC-NSLWRRLKDDSIHVAPIVFDLSFKELRHESKLCFLYLSIFPEDYEIDLEKLIHLLVAEGFIQGDEEMMMEDVARYYIEELIDRS 471          
The following BLAST results are available for this feature:
BLAST of CX676022 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
RGA3_SOLBU6.028e-5545.68Putative disease resistance protein RGA3 OS=Solanu... [more]
RGA1_SOLBU4.776e-5244.03Putative disease resistance protein RGA1 OS=Solanu... [more]
RGA2_SOLBU8.146e-5243.62Disease resistance protein RGA2 OS=Solanum bulboca... [more]
RGA4_SOLBU3.423e-5045.31Putative disease resistance protein RGA4 OS=Solanu... [more]
R13L1_ARATH2.296e-4637.96Putative disease resistance RPP13-like protein 1 O... [more]
DRL21_ARATH2.904e-4135.10Putative disease resistance protein At3g14460 OS=A... [more]
RPM1_ARATH1.223e-3132.59Disease resistance protein RPM1 OS=Arabidopsis tha... [more]
R13L4_ARATH3.330e-2932.40Disease resistance RPP13-like protein 4 OS=Arabido... [more]
R13L3_ARATH1.071e-2734.02Putative disease resistance RPP13-like protein 3 O... [more]
RPP13_ARATH1.827e-2732.65Disease resistance protein RPP13 OS=Arabidopsis th... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_66E02_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-66E02-J4-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676022 ID=CX676022; Name=CX676022; organism=Citrus sinensis; type=EST; length=735bp
GCCATTTGATGAGTTCAGGATTGCCAGAGCAATCATTGAGTCTCTAACGC
CGGGTTCTGCCAAAGACCTTGTAGAGTTTCAATCTCTCATGCAACATATT
GAAGAATGTGTTGCCGGGAAGAAATTTCTTCTTGTCTTAGACGACGTGTG
GAATGAAGATTACTATAAGTGGGAACCATTCTACAAATGTTTAAAGAATA
GTCTCCATGAAAGTAAAATTTTAATTACCACACGTAAAGAAACAGTTGCC
CGTATTATGGGATCAACTCATGTTATCTCTGTCAATGTATTGTCTGAAAT
GGAATGCTGGTCGGTGTTTCAGTCGTTGGCAATTTCTGGTAAGACCATAG
GAAAACGTGAAAATTTAGAAAAAATTGGTAGAGAAATTGTAAAAAAGTGC
AAGGGCTTACCTTTAGCTGCAAAGACAATTGCTAGTCTCTTGCGATCTAA
AAACACTGAAAAAGAATGGCAAAATATCTTAGAGAATGAGATATGGGAAC
TAGAAGCAATTGAGAAAGGCCTTTTAGCCCCTCTATTGTTGAGTTACAAT
GAATTACCCTCCAAGGTAAAGCGTTGTTTCTCATATTGTGCCGTCTTTCC
GAAAGACTATGGAATACGGAAGCATAAGTTAATTGAACTATGGATGGCAC
AAGGTTATCTTAGTGAGAAAGGAGCCAAAGAGATGGAGGATATTGGTGAA
GAGTATTTCAACATCTTAGCTAGCCGTTCATTCTT
back to top